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At least 127 records · Page 7

Engineering a Non‐Natural Photoenzyme for Improved Photon Efficiency**

Abstract Photoenzymes are biological catalysts that use light to convert starting materials into products. These catalysts require photon absorption for each turnover, making quantum efficiency an important optimization parameter. Flavin‐dependent “ene”‐reductases (EREDs) display latent photoenzymatic activity for synthetically valuable hydroalkylations; however, protein engineering has not been used to optimize this non‐natural function. We describe a protein engineering platform for the high throughput optimization of photoenzymes. A single round of engineering results in improved catalytic function toward the synthesis of γ, δ, ϵ‐lactams, and acyclic amides. Mechanistic studies show that key mutations can alter the enzyme's excited state dynamics, enhance its photon efficiency, and ultimately increase catalyst performance. Transient absorption spectroscopy reveals that engineered variants display dramatically decreased radical lifetimes, indicating an evolution toward a concerted mechanism.

Nicholls, Bryce T.↗

Modeling of fluid injection-induced fault reactivation using coupled fluid flow and mechanical interface model

The present study is aimed at developing a numerical model to reproduce coupled hydro-mechanical processes associated with fault reactivation by fluid injection in low permeability rock, as part of the DECOVALEX-2019 project Task B. We proposed a modeling approach for simulating the processes using the TOUGH-FLAC simulator, and modeled a fault reactivation experiment conducted at Mont Terri Rock Laboratory in Switzerland. The first step of the study involved benchmark calculations considering a simplified fault plane and geometry. Fluid flow along a fault was modeled using elements of aperture-sized thickness on the basis of Darcy's law and the cubic law in TOUGH2, whereas the mechanical behavior of a single fault was represented by zero-thickness interface elements in FLAC3D upon which a slip and/or separation is allowed. A methodology to connect a TOUGH2 volume element to a FLAC3D interface element was developed for handling the hydro-mechanical interactions on the fault during fluid injection. Two different fault models for describing the evolutions of hydraulic aperture by elastic fracture opening and failure-induced aperture increase were considered in the benchmark calculations. In the coupling process, the changes in geometrical features and hydrological properties induced by mechanical deformation were continuously updated. The transient responses of the fault and host rock to stepwise pressurization were examined during the simulation. The hydro-mechanical behavior, including the injection flow rate, pressure distribution around the borehole, stress conditions, and displacements in normal and shear directions were monitored in the surrounding rock and along the fault. The results of benchmark calculations suggest that the developed model reasonably represents the hydro-mechanical behavior of a fault and the surrounding rock. This modeling approach was applied to the fault reactivation experiment of the Mont Terri Rock Laboratory. In this interpretive modeling, a parametric study was conducted to examine the effects of input parameters regarding in situ stress and fault properties on the hydro-mechanical responses of the fault to water injection. Then, an optimal parameter set to reproduce the field experiment results was chosen by trial-and-error. The injection flow rate and pressure response during fault reactivation closely matched those obtained at the site, which indicates the capability of the model to appropriately capture the progressive pathway evolution during fault reactivation tests at the site. Finally, the anchor displacements were overestimated by the model, but a fair agreement was obtained in terms of the order of magnitude and the variation tendency.

58 GEOSCIENCES↗

An extensible perturbed parameter ensemble for the Community Atmosphere Model version 6

This paper documents the methodology and preliminary results from a perturbed parameter ensemble (PPE) technique, where multiple parameters are varied simultaneously and the parameter values are determined with Latin hypercube sampling. This is done with the Community Atmosphere Model version 6 (CAM6), the atmospheric component of the Community Earth System Model version 2 (CESM2). We apply the PPE method to CESM2–CAM6 to understand climate sensitivity to atmospheric physics parameters. The initial simulations vary 45 parameters in the microphysics, convection, turbulence and aerosol schemes with 263 ensemble members. These atmospheric parameters are typically the most uncertain in many climate models. Control simulations and targeted simulations to understand climate forcing due to aerosols and fast climate feedbacks are analyzed. The use of various emulators is explored in the multi-dimensional space mapping input parameters to output metrics. Parameter impacts on various model outputs, such as radiation, cloud and aerosol properties, are evaluated. Machine learning is also used to probe optimal parameter values against observations. Our findings show that PPE is a valuable tool for climate uncertainty analysis. Furthermore, by varying many parameters simultaneously, we find that many different combinations of parameter values can produce results consistent with observations, and thus careful analysis of tuning is important. The CESM2–CAM6 PPE is publicly available and extensible to other configurations to address questions of other model processes in the atmosphere and other model components (e.g., coupling to the land surface).

54 ENVIRONMENTAL SCIENCES↗

Reactive burn model calibration using high-throughput initiation experiments at sub-millimeter length scales

We report a first-of-its-kind model calibration was performed using Sandia National Laboratories’ high-throughput initiation (HTI) experiment for two types of vapor-deposited explosive films consisting of hexanitrostilbene (HNS) or pentaerythritol tetranitrate (PETN). These films exhibit prompt initiation, and they reach steady detonation at sub-millimeter length scales. Following prior work on HNS, we test the hypothesis of approximating these explosive films as fine-grained homogeneous solids with simple Arrhenius kinetics burn models. The model calibration process is described herein using a single-step as well as a two-step Arrhenius rate law, and it consists of systematic parameter sampling leading to a reduction in the model degrees of freedom. Multiple local minima are observed; results are given for seven different optimized parameter sets. Each model set is further evaluated in a two-dimensional simulation of the critical failure thickness for a sustained detonation. Overall, the two-step Arrhenius kinetics model captures the observed behavior for HNS; however, neither model produces a good fit to the PETN data. We hypothesize that the HTI results for PETN correspond to a heterogeneous response, owing to the smaller reaction zone of PETN compared to HNS (i.e., it does not homogenize the fine-grained hot spots as well). Future work should consider using the ignition and growth model for PETN, as well as other reactive burn models such as xHVRB, AWSD, PiSURF, and CREST.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A machine learning approach to emulation and biophysical parameter estimation with the Community Land Model, version 5

Abstract. Land models are essential tools for understanding and predicting terrestrial processes and climate–carbon feedbacks in the Earth system, but uncertainties in their future projections are poorly understood. Improvements in physical process realism and the representation of human influence arguably make models more comparable to reality but also increase the degrees of freedom in model configuration, leading to increased parametric uncertainty in projections. In this work we design and implement a machine learning approach to globally calibrate a subset of the parameters of the Community Land Model, version 5 (CLM5) to observations of carbon and water fluxes. We focus on parameters controlling biophysical features such as surface energy balance, hydrology, and carbon uptake. We first use parameter sensitivity simulations and a combination of objective metrics including ranked global mean sensitivity to multiple output variables and non-overlapping spatial pattern responses between parameters to narrow the parameter space and determine a subset of important CLM5 biophysical parameters for further analysis. Using a perturbed parameter ensemble, we then train a series of artificial feed-forward neural networks to emulate CLM5 output given parameter values as input. We use annual mean globally aggregated spatial variability in carbon and water fluxes as our emulation and calibration targets. Validation and out-of-sample tests are used to assess the predictive skill of the networks, and we utilize permutation feature importance and partial dependence methods to better interpret the results. The trained networks are then used to estimate global optimal parameter values with greater computational efficiency than achieved by hand tuning efforts and increased spatial scale relative to previous studies optimizing at a single site. By developing this methodology, our framework can help quantify the contribution of parameter uncertainty to overall uncertainty in land model projections.

54 ENVIRONMENTAL SCIENCES↗

A Behavioral Robotics Approach to Radiation Mapping Using Adaptive Sampling

Radiation mapping is a desirable task to automate because of the inherent risks involved and its tedious nature. A novel system was designed to address this by combining various existing technologies, utilizing behavior-based robotics and Bayesian optimization. The system uses a quadruped robot equipped with a manipulator and gamma detector to take measurements at locations that are selected based on the uncertainty of a surrogate model used to estimate the true radiation field. The robot uses input from the world with depth cameras to avoid collisions with the robot’s body, and unreachable points for the end effector are addressed by both allowing for a soft collision with the environment to occur, prompting the system to abandon that point, and varying the exploration tendency of the optimization based on consecutive collisions. This approach provides unique traversability and adaptability over other strategies in the literature. Experiments were performed by placing a Cesium-137 source on the ground and varying geometric setups and an optimization parameter demonstrating the adaptability to diverse environments and the increased robustness resulting from the designed behavior. The results additionally demonstrate that dynamically adjusting the optimization algorithm’s exploration tendency based on the arm’s collision history improves the system’s ability to navigate cluttered environments and construct accurate radiation maps without getting stuck in unreachable areas.

Adams, Joel↗

Land Model Testbed: Accelerating Development, Benchmarking and Analysis of Land Surface Models

A Land Model Testbed (LMT), designed to provide a computational framework for systematically assessing model fidelity and supporting rapid development of complex multiscale models, offers a general-purpose workflow for conducting large ensemble simulations of multiple land surface models, post-processing large volumes of model output, and evaluating model results. It leverages existing tools for launching model simulations and the International Land Model Benchmarking (ILAMB) package for assessing model fidelity through comparison with best-available observational datasets. Increased complexity and proliferation of uncertain parameters in process representations in land surface models has driven the need for frequent and intensive testing and evaluating of models to quantify uncertainties and optimize parameters such that results are consistent with observations. The LMT described here meets these needs by providing tools to run thousands of ensemble simulations simultaneously and post-process their output files, by automating execution of an enhanced version of ILAMB with site-specific benchmarks and multivariate functional relationships, and by offering ensemble diagnostics and a customizable dashboard for displaying model performance metrics and associated graphics. We envision the LMT capabilities will serve as a foundational computational resource for a proposed user facility focused on terrestrial multiscale model--data integration.

Sreepathi, Sarat↗

Follow the power—pathways to steady-state tokamak reactors

Abstract Diagramming pathways of dimensionless power is a potent method for extrapolating between operating points on present-day tokamaks and future burning plasma devices. The heat transport power, current drive power, H-mode threshold power and other ‘plasma physics’ powers can be expressed in dimensionally correct (or normalized) form as Pa 3/4 , where P is the power and a is the plasma minor radius, with the relative gyroradius ( ρ * ) dependence ranging from gyro-Bohm-like for transport ( P a 3 / 4 ∝ ρ * − 3 / 2 ), Bohm-like for current drive ( P a 3 / 4 ∝ ρ * − 5 / 2 ) and worse than Bohm-like for H-mode threshold ( P a 3 / 4 ∝ ρ * − 3 ). The D–T fusion power cannot be normalized in the same fashion since it is governed by nuclear physics, but at fixed B T it scales like P a 3 / 4 ∝ ρ * − 9 / 2 . Other ‘mixed physics’ powers can be incorporated into the dimensionless power framework by holding B T fixed in the same manner. Diagramming these dimensionless powers vs ρ * shows how the pathway to a steady-state reactor can be optimized relative to various operational boundaries. Using a steady-state hybrid discharge with β N = 3.2 from DIII-D as the starting point, a multi-parameter optimization finds an attractive pathway to steady-state operation on ITER using 76 MW of current drive power (fusion gain of Q fus = 8), along with a pathway to Q fus = 20 in a JET-sized steady-state reactor with B T = 10 T.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Machine Learning for Additive Manufacturing of Functionally Graded Materials

Additive Manufacturing (AM) is a transformative manufacturing technology enabling direct fabrication of complex parts layer-by-layer from 3D modeling data. Among AM applications, the fabrication of Functionally Graded Materials (FGMs) has significant importance due to the potential to enhance component performance across several industries. FGMs are manufactured with a gradient composition transition between dissimilar materials, enabling the design of new materials with location-dependent mechanical and physical properties. This study presents a comprehensive review of published literature pertaining to the implementation of Machine Learning (ML) techniques in AM, with an emphasis on ML-based methods for optimizing FGMs fabrication processes. Through an extensive survey of the literature, this review article explores the role of ML in addressing the inherent challenges in FGMs fabrication and encompasses parameter optimization, defect detection, and real-time monitoring. The article also provides a discussion of future research directions and challenges in employing ML-based methods in the AM fabrication of FGMs.

36 - MATERIALS SCIENCE↗

Evaluation and optimization of flow boiling frictional pressure drop correlations using the data from traditional and next-generation refrigerants in a micro-fin tube

This study presents an experimental evaluation and optimization of flow boiling frictional pressure drop correlations for conventional and next-generation refrigerants in a horizontal micro-fin tube, with particular emphasis on the newly emerging refrigerant blends R-454C and R-455A, for which pressure-drop data in enhanced tubes remain limited. Experiments were conducted with R-410A, R-454C, R-455A, R-134a, R-1234yf, and R-1234ze(E) in a copper micro-fin tube with an inner diameter of 8.468 mm, over mass fluxes ranging from 100 to 300 kg/(m²·s) depending on the refrigerant, and evaporation temperatures of 7, 12, and 14 °C. Frictional pressure gradients were determined from measured total pressure drops after subtracting acceleration pressure drop, and the resulting database was used to assess four existing models: Kuo and Wang (1996), Cavallini et al. (1997), Goto et al. (2001), and Diani et al. (2014). The measured frictional pressure gradient increased with vapor quality and mass flux for all refrigerants and increased further at lower evaporation temperatures, with the overall trend strongly related to liquid viscosity. Among the four correlations, the Goto et al. (2001) model provided the best overall agreement with the measured data before optimization. To further improve prediction accuracy, the Kuo and Wang (1996) and Goto et al. (2001) models were optimized using the complete experimental database. After optimization, both models reduced the overall mean absolute deviation to below 15%, while the optimized Goto et al. (2001) model maintained the best and most consistent overall performance. The results provide new pressure-drop data for next-generation refrigerants and demonstrate that parameter optimization can significantly enhance the applicability of existing micro-fin-tube correlations.

Hu, Yifeng [ORNL] (ORCID:0000000242875185)↗

Effect of threshold parameters on infrared segmentation methods for porosity detection in electron beam powder bed fusion

In-situ process monitoring has seen significant interest in additive manufacturing to address qualification and certification goals. This is especially prevalent in metal powder bed fusion processes such as electron beam powder bed fusion (PBF-EB), with layer-wise infrared imaging being commonly used to detect defects. Here, this work compares two different segmentation methods (static thresholding and statistical thresholding) used for detecting porosity from in-situ infrared imaging data for PBF-EB. Samples were manufactured at a variety of focus offset values to induce porosity. Then, the segmented infrared images were compared to ex-situ X-ray computed tomography scans, which served as a ground-truth reference for objective evaluation. Through this analysis framework, the influential parameters, static threshold and N-value (number of standard deviations above the mean pixel value), respectively, for both image segmentation methods were analyzed and compared for their effects on porosity detection. With optimal parameter settings, the two methods had similar porosity detection performance, but the statistical method performed better under a larger variety of parameter settings.

Infrared imaging↗

Process‐Oriented Calibration of a Turbulence Scheme in the DOE's Global Storm‐Resolving Model Using Machine Learning

A process‐oriented calibration framework is developed for the Simplified Higher‐Order Closure (SHOC) turbulence scheme in DOE's Simple Cloud Resolving E3SM Atmospheric Model (SCREAM). This framework leverages machine learning surrogates and observational constraints to efficiently calibrate SHOC adjustable parameters across two convective regimes: clear‐sky dry convective boundary layer and fair‐weather shallow cumulus clouds from ARM observations. We use perturbed‐parameter ensembles of a doubly periodic version of SCREAM to train surrogates and apply Markov Chain Monte Carlo sampling guided by cost functions based on benchmarking large‐eddy simulations and observations to identify optimized parameter sets that perform well in both regimes. The calibrated SHOC parameters substantially improve boundary‐layer turbulence and cloud boundaries, and modeled cloud fraction and radiative effects align better with observations than the default. These results demonstrate that combining multiple process‐specific convective regimes with machine‐learning surrogates can reduce parametric uncertainties and yield a model more faithful to cloud–turbulence interactions.

58 GEOSCIENCES↗

ERL-Based Compact X-Ray FEL

We propose to develop an energy-recovery-linac (ERL)-based X-ray free-electron laser (XFEL). Taking advantage of the demonstrated high-efficiency energy recovery of the beam power in the ERL, the proposed concept offers the following benefits: i) recirculating the electron beam through high-gradient superconducting RF (SRF) cavities shortens the linac, ii) energy recovery in the SRF linac saves the klystron power and reduces the beam dump power, iii) the high average beam power produces a high average photon brightness. In addition, such a concept has the capability of delivering optimized high-brightness CW X-ray FEL performance at different energies with simultaneous multipole sources. In this paper, we will present the preliminary results on the study of feasibility, optics design and parameter optimization of such a device.

Lin, Fanglei↗

Optimization Through Multi-Fidelity Modeling

We present a novel method for optimizing parameter selection for simulations with an evaluation budget. We start with an existing method for building a multi-fidelity model out of many low-fidelity simulations and few high-fidelity simulations. We propose a novel method to simplify parameter selection without sacrificing performance. We verify these results and compare with existing literature. Next, we propose a novel algorithm which uses this difference model to suggest new points in the parameter design space to simulate. We add each point we simulate to the model to improve its quality for the next iteration. The algorithm trades off reducing the uncertainty of the existing model with optimization of the objective. The first is more useful when a large fraction of the computation budget remains. The second is more useful when a small fraction of the computation budget remains. Our method converges to the optimum by using a high-fidelity evaluation for just 16 of the 427 points. Our method is general enough to work if there is no low-fidelity model. Furthermore, it is agnostic to the underlying physics of the problem. Therefore, both the low-fidelity and high-fidelity models can be generated by any arbitrary function, including simulations and physical experiments.

97 MATHEMATICS AND COMPUTING↗

ERL-BASED COMPACT X-RAY FEL

We propose to develop an energy-recovery-linac (ERL)- based X-ray free-electron laser (XFEL). Taking advantage of the demonstrated high-efficiency energy recovery of the beam power in the ERL, the proposed concept offers the following benefits: i) recirculating the electron beam through high-gradient superconducting RF (SRF) cavities shortens the linac, ii) energy recovery in the SRF linac saves the klystron power and reduces the beam dump power, iii) the high average beam power produces a high average photon brightness. In addition, such a concept has the capability of delivering optimized high-brightness CW X-ray FEL performance at different energies with simultaneous multipole sources. In this paper, we will present the preliminary results on the study of feasibility, optics design and parameter optimization of such a device.

Lin, Fanglei↗

Variational Adiabatic Gauge Transformation on Real Quantum Hardware for Effective Low-Energy Hamiltonians and Accurate Diagonalization

Effective low-energy theories represent powerful theoretical tools to reduce the complexity in modeling interacting quantum many-particle systems. However, common theoretical methods rely on perturbation theory, which limits their applicability to weak interactions. Here we introduce the Variational Adiabatic Gauge Transformation (VAGT), a nonperturbative hybrid quantum algorithm that can use nowadays quantum computers to learn the variational parameters of the unitary circuit that brings the Hamiltonian to either its block-diagonal or full-diagonal form. If a Hamiltonian can be diagonalized via a shallow quantum circuit, then VAGT can learn the optimal parameters using a polynomial number of runs. The accuracy of VAGT is tested through numerical simulations, as well as simulations on Rigetti and IonQ quantum computers.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Diagnostics for Linac Optimization With Machine Learning

The Fermilab Linac delivers 400 MeV H- beam to the rest of the accelerator chain. Providing stable intensity, energy, and emittance is key since it directly affects downstream machines. To counter fluctuations of Linac output due to various effects to be described below we are working on implementing dynamic longitudinal parameter optimization based on Machine Learning (ML). As inputs for the ML model, signals from beam diagnostics have to be well understood and reliable. In this paper we discuss the status and plans for ML-based optimization as well as preliminary results of diagnostics studies.

43 PARTICLE ACCELERATORS↗

Time-drift Aware RF Optimization with Machine Learning Techniques

The Fermilab Linac delivers 400 MeV H- beam to the rest of the accelerator chain. Providing stable intensity, energy, and emittance is key since it directly affects downstream machines. To operate high current beam, accelerators must minimize uncontrolled particle loss; this can be accomplished by minimizing beam longitudinal emittance via RF parameter optimization. However, RF tuning is required daily since the resonance frequency of the accelerating cavities is affected by ambient temperature and humidity variations and thus drifts with time. In addition, the energy and phase space distribution of particles emerging from the ion source are subject to fluctuations. Such drift is not unique to Fermilab, but rather affects most laboratories. We are exploring machine learning (ML) algorithms for automated RF tuning for 2 objectives: optimization of Linac output energy and phase oscillation correction, with an emphasis on time-drift aware modeling that can account for conditions changing over time.

43 PARTICLE ACCELERATORS↗