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At least 127 records · Page 7

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DOE OSTI2022

Proteolytic processing induces a conformational switch required for antibacterial toxin delivery

Many Gram-negative bacteria use CdiA effector proteins to inhibit the growth of neighboring competitors. CdiA transfers its toxic CdiA-CT region into the periplasm of target cells, where it is released through proteolytic cleavage. The N-terminal cytoplasm-entry domain of the CdiA-CT then mediates translocation across the inner membrane to deliver the C-terminal toxin domain into the cytosol. Here, we show that proteolysis not only liberates the CdiA-CT for delivery, but is also required to activate the entry domain for membrane translocation. Translocation function depends on precise cleavage after a conserved VENN peptide sequence, and the processed ΔVENN entry domain exhibits distinct biophysical and thermodynamic properties. By contrast, imprecisely processed CdiA-CT fragments do not undergo this transition and fail to translocate to the cytoplasm. These findings suggest that CdiA-CT processing induces a critical structural switch that converts the entry domain into a membrane-translocation competent conformation.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Evaluating the photophysical and photochemical characteristics of green-emitting cerium(III) mono-cyclooctatetraenide complexes

The photophysical and photochemical reactivity of the organometallic mono(cyclooctatetraenide)-Ce(III) complexes: [(C 8 H 8 )Ce(μ-X)(THF) 2 ] 2 X = O 3 SCF 3 - (1), Cl - (2), were studied. Here, in the course of these studies, a new polymorph of [(C 8 H 8 )Ce(μ-O 3 SCF 3 )(THF) 2 ] 2 (1) was described. Photoluminescence (PL) studies of 1 and 2 showed characteristic excitation and emission bands in the visible region, with bright green light emission under light irradiation from states corresponding to the 5d → 4f transition. Complexes 1 and 2 exhibit relatively long lifetime of 205.4 ± 0.2 and 145.8 ± 0.4 ns respectively. And the quantum yields (Φ) for 1 and 2 are 0.180 and 0.068 respectively. Electrochemical studies were performed on complexes 1 and 2 with a reversible Ce(III)/Ce(IV) redox couple recorded at $E_{1/2}$ = -1.53 V versus the Fc/Fc + for 2. Complex 1 shows an irreversible Ce(III/IV) oxidation wave. Complexes 1 and 2 revealed strongly-reducing, estimated, excited state reduction potentials ($E^*_{1/2}$) of -3.31 and -4.02 V versus the Fc/Fc + respectively, with small Stokes shifts of 0.12 eV. With their associated relatively long lifetimes, small Stokes shifts and large, negative $E^*_{1/2}$ values, both complexes were evaluated as potential photosensitisers for halogen atom transfer (XAT) using a test reaction of the dehalogenation of benzyl chloride.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2023

A biophysical framework for double-drugging kinases

Selective orthosteric inhibition of kinases has been challenging due to the conserved active site architecture of kinases and emergence of resistance mutants. Simultaneous inhibition of distant orthosteric and allosteric sites, which we refer to as “double-drugging”, has recently been shown to be effective in overcoming drug resistance. However, detailed biophysical characterization of the cooperative nature between orthosteric and allosteric modulators has not been undertaken. Here, we provide a quantitative framework for double-drugging of kinases employing isothermal titration calorimetry, Förster resonance energy transfer, coupled-enzyme assays, and X-ray crystallography. We discern positive and negative cooperativity for Aurora A kinase (AurA) and Abelson kinase (Abl) with different combinations of orthosteric and allosteric modulators. We find that a conformational equilibrium shift is the main principle governing cooperativity. Notably, for both kinases, we find a synergistic decrease of the required orthosteric and allosteric drug dosages when used in combination to inhibit kinase activities to clinically relevant inhibition levels. X-ray crystal structures of the double-drugged kinase complexes reveal the molecular principles underlying the cooperative nature of double-drugging AurA and Abl with orthosteric and allosteric inhibitors. Finally, we observe a fully closed conformation of Abl when bound to a pair of positively cooperative orthosteric and allosteric modulators, shedding light on the puzzling abnormality of previously solved closed Abl structures. Collectively, our data provide mechanistic and structural insights into rational design and evaluation of double-drugging strategies.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

Instrumental uncertainties in radiative corrections for the MUSE experiment

The MUSE experiment at the Paul Scherrer Institute is measuring elastic lepton-proton scattering cross sections in a four-momentum transfer range from Q 2 of approximately 0.002–0.08 GeV 2 using positively and negatively charged electrons and muons. The extraction of the Born cross sections from the experimental data requires radiative corrections. Estimates of the instrumental uncertainties in those corrections have been made using the ESEPP event generator. The results depend in particular on the minimum lepton momentum that contributes to the experimental cross section and the fraction of events with hard initial-state radiation that is detected in the MUSE calorimeter and is excluded from the data. Furthermore, these results show that the angular-dependent instrumental uncertainties in radiative corrections to the electron cross section are less than 0.4% and are negligible for the muon cross section.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2022

Effect of Solvent Motion on Ion Transport in Electrolytes

We use concentrated solution theory to derive an equation governing solvent velocity in a binary electrolyte when a current passes through it. This equation, in combination with the material balance equation, enables the prediction of electrolyte concentration profiles and species velocities as a function of space and time. This framework is used to predict ion velocities in Li-Li symmetric cells containing a mixture of lithium bis(trifluoromethanesulfonyl)imide and poly(ethylene oxide) (LiTFSI/PEO), for which the cation transference number relative to the solvent velocity, ${t}_{+}^{0},$ can be either positive or negative, depending on salt concentration. Accounting for the solvent motion is increasingly important at higher concentrations. Especially for negative ${t}_{+}^{0},$ if solvent velocity is set to zero, the cation velocity, based on the electrode-electrolyte interface reference frame, is pointed opposite to the current flow. However, when solvent motion is taken into account, the cation velocity, based on the same reference frame, is in the same direction as the current. This analysis demonstrates the importance of accounting for solvent velocity rigorously in seemingly simple systems such as symmetric cells.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

NASA NTRS1994

Ly(alpha) emission and absorption features in the spectra of galaxies

The combined effects of interstellar dust absorption and of scattering by hydrogen atoms may give rise to a Ly(alpha) spectral feature of negative equivalent width, as has been observed in several star-forming galaxies. By considering the transfer of Ly(alpha) line radiation and of neighboring stellar continuum radiation within a dusty galaxy, we find that dust absorption has three effects: (1) it reduces the apparent ultraviolet continuum luminosity at all wavelengths; (2) it preferentially decreases the apparent Ly(alpha) line luminosity from H II regions; and (3) it creates an 'attenuation feature' in the continuum spectrum -- centered at the Ly(alpha) rest frequency -- which occurs because the attenuation of the stellar continuum radiation increases as the Ly(alpha) rest frequency is approached, due to the effects of scattering by hydrogen atoms. For plausible values of the galactic dust content and of the disk thickness, these effects can lead to a negative net Ly(alpha) equivalent width, even for galaxies in which the unattenuated spectrum would show a strong Ly(alpha) emission line.

Chen, W. L.↗

DOE OSTI2021

Measurement of beam asymmetry for π – Δ ++ photoproduction on the proton at E γ = 8.5 GeV

We report a measurement of the $\pi^-$ photoproduction beam asymmetry for the reaction $\vec{\gamma} p \rightarrow \pi^- \Delta^{++}$ using data from the GlueX experiment in the photon beam energy range 8.2--8.8 GeV. The asymmetry $\Sigma$ is measured as a function of four-momentum transfer $t$ to the $\Delta^{++}$ and compared to phenomenological models. We find that $\Sigma$ varies as a function of $t$: negative at smaller values and positive at higher values of $|t|$. The reaction can be described theoretically by $t$-channel particle exchange requiring pseudoscalar, vector, and tensor intermediaries. In particular, this reaction requires charge exchange, allowing us to probe pion exchange and the significance of higher-order corrections to one-pion exchange at low momentum transfer. Constraining production mechanisms of conventional mesons may aid in the search for and study of unconventional mesons. Furthermore, this is the first measurement of the process at this energy.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2020

Photochemical Upconversion in Water Using Cu(I) MLCT Excited States: Role of Energy Shuttling at the Micellar/Water Interface

Photochemical upconversion (UC) through triplet–triplet annihilation (TTA), which employs a visible absorbing triplet photosensitizer and an annihilator, is a process that generates a high energy photon from two lower energy photons. TTA-UC has been largely developed in pure organic solvents and solid-state polymeric constructs while featuring near exclusive use of rare and expensive metals within the photosensitizer. In this current investigation, we demonstrate that TTA-UC from the long lifetime earth-abundant photosensitizer [Cu(dsbtmp) 2 ](PF) 6 (dsbtmp = 2,9-di(sec-butyl)-3,4,7,8-tetramethyl-1,10-phenanthroline), abbreviated as Cu-PS, functions in water through encapsulation within a cationic-based assembly. Cetyltrimethylammonium bromide was the surfactant of choice as it electrostatically binds the negatively charged water-soluble 10-phenylanthracene-9-carboxylate (PAC) acceptor/annihilator and ultimately facilitates energy transfer across the interface. Efficient triplet–triplet energy transfer (TTET) from Cu-PS to the PAC acceptor was achieved in this aqueous assembly. Unfortunately, the hindered mobility of the PAC moieties ultimately hampered the annihilation process, and this was reflected in attenuated TTA rates and efficiencies. The combined experimental data illustrated that the water-soluble PAC acceptor was able to vectorially deliver the excited-state energy stored in Cu-PS across the interface into the bulk aqueous solution by engaging in excited-state electron transfer with methyl viologen acceptors. Lastly, these results are important for remotely operating photoredox reactions in water while rendering a photosensitizer spatially isolated in the hydrophobic core of a micelle.

36 MATERIALS SCIENCE↗

DOE OSTI2023

Kinetic simulation of a 50 mTorr capacitively coupled argon discharge over a range of frequencies and comparison to experiments

The effect of driving frequency in the range of 13.56–73 MHz on electron energy distribution and electron heating modes in a 50 mTorr capacitively coupled argon plasma discharge is studied using 1D-3V particle-in-cell simulations. Calculated electron energy probability functions exhibit three distinct “temperatures” for low-, mid-, and high-energy electrons at all the studied driving frequencies. When compared to published experimental data, the calculated probability functions show a reasonable agreement for the energy range resolved in the measurements (about 2–10 eV). Discrepancies due to limitations in experimental energy resolution outside this range lead to differences between computational and experimental values of the electron number density determined from the distribution functions, and the predicted effective electron temperature is within 25% of experimental values. The impedance of the discharge is interpreted in terms of a homogeneous equivalent circuit model, and the driving frequency dependence of the inferred combined sheath thickness is found to obey a known, theoretically derived, power law. The average power transferred from the field to the electrons (electron heating) is computed, and a region of negative heating near the sheath edge, particularly at higher driving frequencies, is identified. Analysis of the electron momentum equation shows that electron inertia, which on temporal averaging would be zero in a linear regime, is responsible for negative values of power deposition near the sheath edge at high driving frequencies due to the highly nonlinear behavior of the discharge.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2020

Kinetic Modeling and Experimental Studies of Capacitively Coupled Macro- and Microplasmas at Microwave Frequencies

The effect of driving frequency in the range of 13.56 MHz to 73 MHz on electron energy distribution and electron heating modes in a 50 mTorr capacitively coupled argon plasma discharge is studied using 1D-3V particle-in-cell simulations. Calculated electron energy probability functions exhibit three distinct temperatures for low-, mid-, and high-energy electrons at all the studied driving frequencies. When compared to published experimental data, the calculated probability functions show a reasonable agreement for the energy range resolved in the measurements (about 2 eV to 10 eV). Discrepancies due to limitations in experimental energy resolution outside this range lead to differences between computational and experimental values of the electron number density determined from the distribution functions, and the predicted effective electron temperature is within 25 % of experimental values. The impedance of the discharge is interpreted in terms of a homogeneous equivalent circuit model and the driving frequency dependence of the inferred combined sheath thickness is found to obey a known, theoretically-derived, power law. The average power transferred from the field to the electrons (electron heating) is computed, and a region of negative heating near the sheath edge, particularly at higher driving frequencies, is identified. Analysis of the electron momentum equation shows that electron inertia, which on temporal averaging would be zero in a linear regime, is responsible for negative values of power deposition near the sheath edge at high driving frequencies due to the highly nonlinear behavior of the discharge.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

NASA NTRS1986

A theoretical and empirical study of the response of the high latitude thermosphere to the sense of the 'Y' component of the interplanetary magnetic field

Patterns of magnetospheric energetic plasma precipitation as a function of the Y component of the Interplanetary Magnetic Field (IMF) are studied. The development of a three-dimensional, time-dependent global thermospheric model using a polar conversion electric field with a dependence on the Y component of the IMF to evaluate thermospheric wind circulation is examined. Thermospheric wind data from the ISEE-3 satellite, Dynamics Explorer-2 satellite, and a ground-based Fabry-Perot interferometer in Kiruna, Sweden, collected on December 1, 2, 6, 25, 1981 and February 12, 13, 1982 are described. The observed data and simulations of polar thermospheric winds are compared. In the Northern Hemisphere a strong antisunward ion flow on the dawn side of the geomagnetic polar cap is observed when the BY is positive, and the flow is detected on the dusk side when the BY is negative. It is concluded that the strength and direction of the IMF directly control the transfer of solar wind momentum and energy to the high latitude thermosphere.

Rees, D.↗

NASA NTRS2003

An Improved Design for Air Removal from Aerospace Fluid Loop Coolant Systems

Aerospace applications with requirements for large capacity heat removal (launch vehicles, platforms, payloads, etc.) typically utilize a liquid coolant fluid as a transport media to increase efficiency and flexibility in the vehicle design. An issue with these systems however, is susceptibility to the presence of noncondensable gas (NCG) or air. The presence of air in a coolant loop can have numerous negative consequences, including loss of centrifugal pump prime, interference with sensor readings, inhibition of heat transfer, and coolant blockage to remote systems. Hardware ground processing to remove this air is also cumbersome and time consuming which continuously drives recurring costs. Current systems for maintaining the system free of air are tailored and have demonstrated only moderate success. An obvious solution to these problems is the development and advancement of a passive gas removal device, or gas trap, that would be installed in the flight cooling system simplifying the initial coolant fill procedure and also maintaining the system during operations. The proposed device would utilize commercially available membranes thus increasing reliability and reducing cost while also addressing both current and anticipated applications. In addition, it maintains current pressure drop, water loss, and size restrictions while increasing tolerance for pressure increases due to gas build-up in the trap.

Ritchie, Stephen M. C.↗

NASA NTRS2004

Cluster observations of quasi-periodic impulsive signatures in the dayside northern lobe: High-latitude flux transfer events?

We report on a series of quasi-periodic reversals in GSM B(sub Z) observed by the four Cluster spacecraft in the northern dayside lobe poleward of the cusp on 23 February 2001. During an interval of about 35 min, multiple reversals (negative to positive) in B(sub Z) of approximately 1-min duration with an approximate 8-min recurrence time were observed. The individual structures do not resemble low-latitude flux transfer events (FTE) [Russell and Elphic, 1979] but the 8-min recurrence frequency suggests that intermittent reconnection may be occurring .Measurements (appropriately lagged) of the solar wind at ACE show that the IMF was southward-oriented with a strong B(sub X) and that a modest dynamic pressure increased as the events started. The multi-point observations afforded by the Cluster spacecraft were used to infer the motion (direction and speed) of the observed magnetic field reversals. The associated currents were also calculated and they are consistent with the spatial confinement of the observed magnetic field reversals. We propose that the observed reversals are due to flux tubes reconnecting with closed field lines on the dayside. Ancillary data from the Cluster Ion Spectrometry (CIS) and Plasma Electron And Current Experiment (PEACE) instruments were used to develop a physical picture of the reversals.

Thompson, S. M.↗

NASA NTRS1986

Relativistic corrections to the Bethe sum rule

Relativistic corrections to the Bethe sum rule have been obtained for a one-electron system. The relativistic sum is first derived assuming completeness by employing the Dirac Hamiltonian. Then, a semirelativistic approach to order v-squared/c-squared is presented following the Foldy-Wouthuysen transformation scheme to exclude the contributions from the negative-energy states. The results have wide applications in high-Z systems at large momentum transfers.

Leung, P. T.↗

NASA NTRS1994

A dynamic localization model with stochastic backscatter

The modeling of subgrid scales in large-eddy simulation (LES) has been rationalized by the introduction of the dynamic localization procedure. This method allows one to compute rather than prescribe the unknown coefficients in the subgrid-scale model. Formally, the LES equations are supposed to be obtained by applying to the Navier-Stokes equations a 'grid filter' operation. Though the subgrid stress itself is unknown, an identity between subgrid stresses generated by different filters has been derived. Although preliminary tests of the Dynamic Localization Model (DLM) with k-equation have been satisfactory, the use of a negative eddy viscosity to describe backscatter is probably a crude representation of the physics of reverse transfer of energy. Indeed, the model is fully deterministic. Knowing the filtered velocity field and the subgrid-scale energy, the subgrid stress is automatically determined. We know that the LES equations cannot be fully deterministic since the small scales are not resolved. This stems from an important distinction between equilibrium hydrodynamics and turbulence. In equilibrium hydrodynamics, the molecular motions are also not resolved. However, there is a clear separation of scale between these unresolved motions and the relevant hydrodynamic scales. The result of molecular motions can then be separated into an average effect (the molecular viscosity) and some fluctuations. Due to the large number of molecules present in a box with size of the order of the hydrodynamic scale, the ratio between fluctuations and the average effect should be very small (as a result of the 'law of large numbers'). For that reason, the hydrodynamic balance equations are usually purely deterministic. In turbulence, however, there is no clear separation of scale between small and large eddies. In that case, the fluctuations around a deterministic eddy viscosity term could be significant. An eddy noise would then appear through a stochastic term in the subgrid-scale model and could be the source of backscatter.

Carati, Daniele↗

NASA NTRS2019

Field Evaluation of the Baseline Integrated Arrival, Departure, and Surface Capabilities at Charlotte Douglas International Airport

NASA is currently developing a suite of decision support capabilities for integrated arrival, departure, and surface (IADS) operations in a metroplex environment. The effort is being made in three phases, under NASA's Airspace Technology Demonstration 2 (ATD-2) sub-project, through a strong partnership with the Federal Aviation Administration (FAA), air carriers, airport, and general aviation community. The Phase 1 Baseline IADS capabilities provide enhanced operational efficiency and predictability of flight operations through data exchange and integration, tactical surface metering, and automated coordination of release time of controlled flights for overhead stream insertion. The users of the IADS system include the personnel at the Charlotte Douglas International Airport (CLT) air traffic control tower, American Airlines ramp tower, CLT terminal radar approach control (TRACON), and Washington Center. This paper describes the Phase 1 Baseline IADS capabilities and field evaluation conducted at CLT from September 2017 for a year. From the analysis of operations data, it is estimated that 538,915 kilograms of fuel savings, and 1,659 metric tons of CO2 emission reduction were achieved during the period with a total of 944 hours of engine run time reduction. The amount of CO2 savings is estimated as equivalent to planting 42,560 urban trees. The results have also shown that the surface metering had no negative impact on on-time arrival performance of both outbound and inbound flights. The technology transfer of Phase 1 Baseline IADS capabilities has been made to the FAA and aviation industry, and the development of additional capabilities for the subsequent phases is underway.

Jung, Yoon C.↗

NASA NTRS2019

Field Evaluation of the Baseline Integrated Arrival, Departure, and Surface (IADS) Capabilities at Charlotte Douglas International Airport (CLT)

and Surface (IADS)↗

DOE OSTI2024

Embedding Reverse Electron Transfer Between Stably Bare Cu Nanoparticles and Cation‐Vacancy CuWO 4

Cu nanoparticles (NPs) have attracted widespread attention in electronics, energy, and catalysis. However, conventionally synthesized Cu NPs face some challenges such as surface passivation and agglomeration in applications, which impairs their functionalities in the physicochemical properties. Here, the issues above by engineering an embedded interface of stably bare Cu NPs on the cation-vacancy CuWO 4 support is addressed, which induces the strong metal-support interactions and reverse electron transfer. Various atomic-scale analyses directly demonstrate the unique electronic structure of the embedded Cu NPs with negative charge and anion oxygen protective layer, which mitigates the typical degradation pathways such as oxidation in ambient air, high-temperature agglomeration, and CO poisoning adsorption. Kinetics and in situ spectroscopic studies unveil that the embedded electron-enriched Cu NPs follow the typical Eley-Rideal mechanism in CO oxidation, contrasting the Langmuir-Hinshelwood mechanism on the traditional Cu NPs. This mechanistic shift is driven by the Coulombic repulsion in anion oxygen layer, enabling its direct reaction with gaseous CO to form the easily desorbed monodentate carbonate.

Cu nanoparticles↗