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At least 127 records · Page 7

Multiscale modeling and computation of optically manipulated nano devices

We present a multiscale modeling and computational scheme for optical-mechanical responses of nanostructures. The multi-physical nature of the problem is a result of the interaction between the electromagnetic (EM) field, the molecular motion, and the electronic excitation. To balance accuracy and complexity, we adopt the semi-classical approach that the EM field is described classically by the Maxwell equations, and the charged particles follow the Schrödinger equations quantum mechanically. To overcome the numerical challenge of solving the high dimensional multi-component many-body Schrödinger equations, we further simplify the model with the Ehrenfest molecular dynamics to determine the motion of the nuclei, and use the Time-Dependent Current Density Functional Theory (TD-CDFT) to calculate the excitation of the electrons. This leads to a system of coupled equations that computes the electromagnetic field, the nuclear positions, and the electronic current and charge densities simultaneously. In the regime of linear responses, the resonant frequencies initiating the out-of-equilibrium optical-mechanical responses can be formulated as an eigenvalue problem. A self-consistent multiscale method is designed to deal with the well separated space scales. The isomerization of azobenzene is presented as a numerical example.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Multilevel Algorithm for Atmospheric Data Assimilation

A multiscale algorithm for the problem of optimal statistical interpolation of observed data has been developed. This problem includes the calculation of the vector of the 'analyzed' (best estimated) atmosphere flow field w(sup a) by the formula: w(sup a) = w(sup f) + P(sup f) H(sup T) y, where the quantity y is defined by the equation (H P(sup f) H(sup T) + R)y = w(sup o) - H w(sup f), using the given model forecast first guess w(sup f) and the vector of observations w(sup o); H is an interpolation operator from the regular grid to the observation network, P(sup f) is the forecast error covariance matrix, and R is the observation error covariance matrix. At this initial stage the case of univariate analysis of single level radiosonde height data is considered. The matrix R is assumed to be diagonal, and the matrix P(sup f) is assumed to be given by the formula P(sub ij)(sup f) = sigma(sub i)(sup f) mu(sub ij) sigma(sub j)(sub f), where mu(sub ij) is a smooth, decreasing function of the distance between the i-th and the j-th points. In this paper we describe a multiscale iterative process based on a multiresolution, simultaneous displacement technique and a localized variational calculation of iteration parameters.

Brandt, Achi↗

Dynamics of a spherical particle in an acoustic field: A multiscale approach

A rigid spherical particle in an acoustic wave field oscillates at the wave period but has also a mean motion on a longer time scale. The dynamics of this mean motion is crucial for numerous applications of acoustic microfluidics, including particle manipulation and flow visualisation. It is controlled by four physical effects: acoustic (radiation) pressure, streaming, inertia, and viscous drag. In this paper, we carry out a systematic multiscale analysis of the problem in order to assess the relative importance of these effects depending on the parameters of the system that include wave amplitude, wavelength, sound speed, sphere radius, and viscosity. We identify two distinguished regimes characterised by a balance among three of the four effects, and we derive the equations that govern the mean particle motion in each regime. This recovers and organises classical results by King [“On the acoustic radiation pressure on spheres,” Proc. R. Soc. A 147, 212–240 (1934)], Gor'kov [“On the forces acting on a small particle in an acoustical field in an ideal fluid,” Sov. Phys. 6, 773–775 (1962)], and Doinikov [“Acoustic radiation pressure on a rigid sphere in a viscous fluid,” Proc. R. Soc. London A 447, 447–466 (1994)], clarifies the range of validity of these results, and reveals a new nonlinear dynamical regime. In this regime, the mean motion of the particle remains intimately coupled to that of the surrounding fluid, and while viscosity affects the fluid motion, it plays no part in the acoustic pressure. Simplified equations, valid when only two physical effects control the particle motion, are also derived. They are used to obtain sufficient conditions for the particle to behave as a passive tracer of the Lagrangian-mean fluid motion.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Strong suppression of heat conduction in a laboratory replica of galaxy-cluster turbulent plasmas

In conventional gases and plasmas, it is known that heat fluxes are proportional to temperature gradients, with collisions between particles mediating energy flow from hotter to colder regions and the coefficient of thermal conduction given by Spitzer’s theory. However, this theory breaks down in magnetized, turbulent, weakly collisional plasmas, although modifications are difficult to predict from first principles due to the complex, multiscale nature of the problem. Understanding heat transport is important in astrophysical plasmas such as those in galaxy clusters, where observed temperature profiles are explicable only in the presence of a strong suppression of heat conduction compared to Spitzer’s theory. To address this problem, we have created a replica of such a system in a laser laboratory experiment. Our data show a reduction of heat transport by two orders of magnitude or more, leading to large temperature variations on small spatial scales (as is seen in cluster plasmas).

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

A multiresolution adaptive wavelet method for nonlinear partial differential equations

We report the multiscale complexity of modern problems in computational science and engineering can prohibit the use of traditional numerical methods in multi-dimensional simulations. Therefore, novel algorithms are required in these situations to solve partial differential equations (PDEs) with features evolving on a wide range of spatial and temporal scales. To meet these challenges, we present a multiresolution wavelet algorithm to solve PDEs with significant data compression and explicit error control. We discretize in space by projecting fields and spatial derivative operators onto wavelet basis functions. We provide error estimates for the wavelet representation of fields and their derivatives. Then, our estimates are used to construct a sparse multiresolution discretization which guarantees the prescribed accuracy. Additionally, we embed a predictor-corrector procedure within the temporal integration to dynamically adapt the computational grid and maintain the accuracy of the solution of the PDE as it evolves. We present examples to highlight the accuracy and adaptivity of our approach.

97 MATHEMATICS AND COMPUTING↗

Scalable fault tolerance runtime technology for petascale computers (Final Project Report)

With the massive number of components comprising the forthcoming petascale computer systems, hardware failures will be routinely encountered during execution of large-scale applications. Due to the multidisciplinary, multiresolution, and multiscale nature of scientific problems that drive the demand for high end systems, applications place increasingly differing demands on the system resources: disk, network, memory, and CPU. In addition to MPI, future applications are expected to use advanced programming models such as those developed under the DARPA HPCS program as well as existing global address space programming models such as Global Arrays, UPC, and Co-Array Fortran. While there has been a considerable amount of work in fault tolerant MPI with a number of strategies and extensions for fault tolerance proposed, virtually none of advanced models proposed for emerging petascale systems is currently fault aware. To achieve fault tolerance, development of underlying runtime and OS technologies able to scale to petascale level is needed. This project has evaluated range of runtime techniques for fault tolerance for advanced programming models.

97 MATHEMATICS AND COMPUTING↗

A Study of the Optical Properties of Ice Crystals with Black Carbon Inclusions

The report focuses on the modification of the optical properties of ice crystals due to atmospheric black carbon (BC) contamination: the objective is to advance the predictive capabilities of climate models through an improved understanding of the radiative properties of compound particles. The shape of the ice crystal (as commonly found in cirrus clouds and contrails), the volume fraction of the BC inclusion, and its location inside the crystal are the three factors examined in this study. In the multiscale description of this problem, where a small absorbing inclusion modifies the optical properties of a much larger non-absorbing particle, state-of-the-art discretization techniques are combined to provide the best compromise of flexibility and accuracy over a broad range of sizes.

54 ENVIRONMENTAL SCIENCES↗

NEAMS-IPL MOOSE Framework Activities

The Multiapp Picard iteration Milestone’s purpose was to support a framework level “tight-coupling” method within the hierarchical Multiapp’s execution scheme. This new solution scheme gives developers new choices for running multiphysics applications, particularly those with very strong nonlinear effects or those requiring coupling across disparate time or spatial scales. Figure 1 shows a typical Multiapp setup in MOOSE. Each node represents a separate simulation containing a separate equation system. MOOSE solves the equation system on each node in turn, in a user-controlled manner. Information can be aggregated or split and transferred from parent to child or child to parent as needed between solves. Performing a tightly coupled execution scheme using this method wasn’t possible in the original implementation. This is was due to the inability to back up to a previous state once a converged solution was accepted at a particular Multiapp level.

97 MATHEMATICS AND COMPUTING↗

Designing Adaptive Low Dissipative High Order Schemes

Proper control of the numerical dissipation/filter to accurately resolve all relevant multiscales of complex flow problems while still maintaining nonlinear stability and efficiency for long-time numerical integrations poses a great challenge to the design of numerical methods. The required type and amount of numerical dissipation/filter are not only physical problem dependent, but also vary from one flow region to another. This is particularly true for unsteady high-speed shock/shear/boundary-layer/turbulence/acoustics interactions and/or combustion problems since the dynamics of the nonlinear effect of these flows are not well-understood. Even with extensive grid refinement, it is of paramount importance to have proper control on the type and amount of numerical dissipation/filter in regions where it is needed.

Yee, H. C.↗

Nonlocal and Mixed-Locality Multiscale Finite Element Methods

In many applications the resolution of small-scale heterogeneities remains a significant hurdle to robust and reliable predictive simulations. In particular, while material variability at the mesoscale plays a fundamental role in processes such as material failure, the resolution required to capture mechanisms at this scale is often computationally intractable. Multiscale methods aim to overcome this difficulty through judicious choice of a subscale problem and a robust manner of passing information between scales. One promising approach is the multiscale finite element method, which increases the fidelity of macroscale simulations by solving lower-scale problems that produce enriched multiscale basis functions. Here, in this study, we present the first work toward application of the multiscale finite element method to the nonlocal peridynamic theory of solid mechanics. This is achieved within the context of a discontinuous Galerkin framework that facilitates the description of material discontinuities and does not assume the existence of spatial derivatives. Analysis of the resulting nonlocal multiscale finite element method is achieved using the ambulant Galerkin method, developed here with sufficient generality to allow for application to multiscale finite element methods for both local and nonlocal models that satisfy minimal assumptions. Finally, we conclude with preliminary results on a mixed-locality multiscale finite element method in which a nonlocal model is applied at the fine scale and a local model at the coarse scale.

97 MATHEMATICS AND COMPUTING↗

Learning constitutive relations using symmetric positive definite neural networks

In this work, we present a new neural-network architecture, called the Cholesky-factored symmetric positive definite neural network (SPD-NN), for modeling constitutive relations in computational mechanics. Instead of directly predicting the stress of the material, the SPD-NN trains a neural network to predict the Cholesky factor of the tangent stiffness matrix, based on which the stress is calculated in incremental form. As a result of this special structure, SPD-NN weakly imposes convexity on the strain energy function, satisfies the second order work criterion (Hill's criterion) and time consistency for path-dependent materials, and therefore improves numerical stability, especially when the SPD-NN is used in finite element simulations. Depending on the types of available data, we propose two training methods, namely direct training for strain and stress pairs and indirect training for loads and displacement pairs. We demonstrate the effectiveness of SPD-NN on hyperelastic, elasto-plastic, and multiscale fiber-reinforced plate problems from solid mechanics. The generality and robustness of SPD-NN make it a promising tool for a wide range of constitutive modeling applications.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Constraint energy minimizing generalized multiscale finite element method for multi-continuum Richards equations

In fluid flow simulation, the multi-continuum model is a useful strategy. When the heterogeneity and contrast of coefficients are high, the system becomes multiscale, and some kinds of reduced order methods are demanded. Combining these techniques with nonlinearity, we will consider in this paper a dual-continuum model which is generalized as a multi-continuum model for a coupled system of nonlinear Richards equations as unsaturated flows, in complex heterogeneous fractured porous media; and we will solve it by a novel multiscale approach utilizing the constraint energy minimizing generalized multiscale finite element method (CEM-GMsFEM). In particular, such a nonlinear system will be discretized in time and then linearized by Picard iteration (whose global convergence is proved theoretically). Subsequently, we tackle the resulting linearized equations by the CEM-GMsFEM and obtain proper offline multiscale basis functions to span the multiscale space (which contains the pressure solution). More specifically, we first introduce two new sources of samples, and the GMsFEM is used over each coarse block to build local auxiliary multiscale basis functions via solving local spectral problems, that are crucial for detecting high-contrast channels. Second, per oversampled coarse region, local multiscale basis functions are created through the CEM as constrainedly minimizing an energy functional. Various numerical tests for our approach reveal that the error converges with the coarse-grid size and that only few oversampling layers as well as basis functions are needed.

97 MATHEMATICS AND COMPUTING↗

Generative learning of densities on manifolds

A generative modeling framework is proposed that combines diffusion models and manifold learning to efficiently sample data densities on manifolds. The approach utilizes Diffusion Maps to uncover possible low-dimensional underlying (latent) spaces in the high-dimensional data (ambient) space. Two approaches for sampling from the latent data density are described. The first is a score-based diffusion model, which is trained to map a standard normal distribution to the latent data distribution using a neural network. The second one involves solving an Itô stochastic differential equation in the latent space. Additional realizations of the data are generated by lifting the samples back to the ambient space using Double Diffusion Maps , a recently introduced technique typically employed in studying dynamical system reduction; here the focus lies in sampling densities rather than system dynamics. The proposed approaches enable sampling high dimensional data densities restricted to low-dimensional, a priori unknown manifolds. The efficacy of the proposed framework is demonstrated through a benchmark problem and a material with multiscale structure.

Double diffusion maps↗

Multi-rate time integration on overset meshes

Overset meshes are an effective tool for the computational fluid dynamic simulation of problems with complex geometries or multiscale spatio-temporal features. When the maximum allowable timestep on one or more meshes is significantly smaller than on the remaining meshes, standard explicit time integrators impose inefficiencies for time-accurate calculations by requiring that all meshes advance with the smallest timestep. With the targeted use of multi-rate time integrators, separate meshes can be time-marched at independent rates to avoid wasteful computation while maintaining accuracy and stability. This work applies time-explicit multi-rate integrators to the simulation of the compressible Navier-Stokes equations discretized on overset meshes using summation-by-parts (SBP) operators and simultaneous approximation term (SAT) boundary conditions. We introduce a class of multi-rate Adams-Bashforth (MRAB) schemes that offer significant stability improvements and computational efficiencies for SBP-SAT methods. We present numerical results that confirm the efficacy of MRAB integrators, outline a number of implementation challenges, and demonstrate a reduction in computational cost enabled by MRAB. We also look at the use of our method in the setting of a large-scale distributed-memory parallel implementation where we discuss concerns involving load balancing and communication efficiency.

97 MATHEMATICS AND COMPUTING↗

Cross-Scale Catalyst Modeling Applied to H 2 Storage and Release via Formic Acid

Here, we propose the Systems-to-Atoms (S2A) modeling framework that integrates the kinetics of reaction chemistry and structural configurations across various length scales with the aim of establishing a versatile template for multiscale modeling of reactive flow problems and to predict the operando activity of catalyst materials. The approach encompasses a microkinetic model to analyze surface reactions on individual facets of catalyst nanoparticles coupled with the computation of average surface reaction rates for catalyst nanoparticles of specific size distributions. Macro-homogeneous surface reaction kinetics are derived as a function of catalyst loading and used as input parameters for the continuum-scale reactor model. The cross-scale framework enables the optimization of catalyst utilization through reactor design and operating strategy. To demonstrate the framework, we studied the storage and release of hydrogen from formic acid, a promising liquid organic hydrogen carrier (LOHC), over Pd, Pt, and Cu catalysts. The framework predicts observed trends in formic acid dehydrogenation activity for catalysts with comparable weight loadings and metal particle diameters, demonstrating satisfactory quantitative alignment. Finally, the seamless transmission of parameter uncertainties between scales is also discussed.

08 HYDROGEN↗