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NASA NTRS1994

The genus curve of the Abell clusters

We study the topology of large-scale structure through a genus curve measurement of the recent Abell catalog redshift survey of Postman, Huchra, and Geller (1992). The structure is found to be spongelike near median density and to exhibit isolated superclusters and voids at high and low densities, respectively. The genus curve shows a slight shift toward 'meatball' topology, but remains consistent with the hypothesis of Gaussian random phase initial conditions. The amplitude of the genus curve corresponds to a power-law spectrum with index n = 0.21(sub -0.47 sup +0.43) on scales of 48/h Mpc or to a cold dark matter power spectrum with omega h = 0.36(sub -0.17 sup +0.46).

Rhoads, James E.↗

NASA NTRS2021

Anaerobic Expression and Purification of Holo-CCIS, an Artificial Iron-sulfur Protein

Iron-sulfur proteins are ubiquitous among all living organisms and are indispensable for almost all metabolic pathways ranging from photosynthesis, respiration, nitrogen, and carbon dioxide cycles. The iron-sulfur clusters primarily serve as electron acceptors and donors and transfer electrons to active sites of various enzymes, thus driving the energy metabolism. Prokaryotes like E. coli have ISC and SUF pathways that help in the assembly and maturation of iron-sulfur proteins. These ironsulfur proteins, especially with [4Fe-4S] clusters, are highly sensitive to molecular oxygen, and it would be advantageous if the de novo proteins and native proteins having iron-sulfur binding sites are expressed and isolated under anaerobic conditions. Bacterially assembled iron-sulfur proteins, when isolated and purified anaerobically, exhibit improved biochemical and biophysical stabilities in comparison to the counterparts expressed and purified aerobically and reconstituted under anaerobic conditions. This protocol outlines the expression and purification of the artificial protein, Coiled-Coil IronSulfur (CCIS). It may be deployed to both natural and artificial [4Fe-4S] proteins when heterologously expressed in E. coli.

Bhanu P. Jagilinki↗

NASA NTRS2013

X-ray Properties of the Young Open Clusters HM1 and IC 2944-2948

Using XMM-Newton data, we study for the first time the X-ray emission of HM1 and IC 2944/2948. Low-mass, pre-main-sequence objects with an age of a few Myr are detected, as well as a few background or foreground objects. Most massive stars in both clusters display the usual high-energy properties of that type of objects, though with log [L(sub X)/L(sub BOL)] apparently lower in HM1 than in IC2944/2948. Compared with studies of other clusters, it seems that a low signal-to-noise ratio at soft energies, due to the high extinction, may be the main cause of this difference. In HM1, the two Wolf-Rayet stars show contrasting behaviors:WR89 is extremely bright, but much softer than WR87. It remains to be seen whether wind-wind collisions or magnetically confined winds can explain these emissions. In IC 2944/2948, the X-ray sources concentrate around HD 101205; a group of massive stars to the north of this object is isolated, suggesting that there exist two subclusters in the field-of-view.

X-ray properties↗

NASA NTRS2016

An Objective Classification of Saturn Cloud Features from Cassini ISS Images

A k -means clustering algorithm is applied to Cassini Imaging Science Subsystem continuum and methane band images of Saturn's northern hemisphere to objectively classify regional albedo features and aid in their dynamical interpretation. The procedure is based on a technique applied previously to visible- infrared images of Earth. It provides a new perspective on giant planet cloud morphology and its relationship to the dynamics and a meteorological context for the analysis of other types of simultaneous Saturn observations. The method identifies 6 clusters that exhibit distinct morphology, vertical structure, and preferred latitudes of occurrence. These correspond to areas dominated by deep convective cells; low contrast areas, some including thinner and thicker clouds possibly associated with baroclinic instability; regions with possible isolated thin cirrus clouds; darker areas due to thinner low level clouds or clearer skies due to downwelling, or due to absorbing particles; and fields of relatively shallow cumulus clouds. The spatial associations among these cloud types suggest that dynamically, there are three distinct types of latitude bands on Saturn: deep convectively disturbed latitudes in cyclonic shear regions poleward of the eastward jets; convectively suppressed regions near and surrounding the westward jets; and baro-clinically unstable latitudes near eastward jet cores and in the anti-cyclonic regions equatorward of them. These are roughly analogous to some of the features of Earth's tropics, subtropics, and midlatitudes, respectively. This classification may be more useful for dynamics purposes than the traditional belt-zone partitioning. Temporal variations of feature contrast and cluster occurrence suggest that the upper tropospheric haze in the northern hemisphere may have thickened by 2014. The results suggest that routine use of clustering may be a worthwhile complement to many different types of planetary atmospheric data analysis.

atmosphere dynamics↗

NASA NTRS1991

Pilot personality and crew coordination - Implications for training and selection

It is contended that past failures to find linkages between performance and personality were due to a combination of premature performance evaluation, inadequate statistical modeling, and/or the reliance on data gathered in contrived as opposed to realistic situations. The goal of the research presented is to isolate subgroups of pilots along performance-related personality dimensions and to document limits on the impact of crew coordination training between the groups. Three different profiles were identified through cluster analysis of personality scales that replicated across samples and predicted attitude change following training in crew coordination.

Chidester, Thomas R.↗

NASA NTRS2011

Atmospheric Blocking and Atlantic Multi-Decadal Ocean Variability

Based on the 20th century atmospheric reanalysis, winters with more frequent blocking, in a band of blocked latitudes from Greenland to Western Europe, are found to persist over several decades and correspond to a warm North Atlantic Ocean, in-phase with Atlantic multi-decadal ocean variability. Atmospheric blocking over the northern North Atlantic, which involves isolation of large regions of air from the westerly circulation for 5 days or more, influences fundamentally the ocean circulation and upper ocean properties by impacting wind patterns. Winters with clusters of more frequent blocking between Greenland and western Europe correspond to a warmer, more saline subpolar ocean. The correspondence between blocked westerly winds and warm ocean holds in recent decadal episodes (especially, 1996-2010). It also describes much longer-timescale Atlantic multidecadal ocean variability (AMV), including the extreme, pre-greenhouse-gas, northern warming of the 1930s-1960s. The space-time structure of the wind forcing associated with a blocked regime leads to weaker ocean gyres and weaker heat-exchange, both of which contribute to the warm phase of AMV.

Haekkinen, Sirpa↗

NASA NTRS2011

Atmospheric Blocking and Atlantic Multidecadal Ocean Variability

Atmospheric blocking over the northern North Atlantic, which involves isolation of large regions of air from the westerly circulation for 5 days or more, influences fundamentally the ocean circulation and upper ocean properties by affecting wind patterns. Winters with clusters of more frequent blocking between Greenland and western Europe correspond to a warmer, more saline subpolar ocean. The correspondence between blocked westerly winds and warm ocean holds in recent decadal episodes (especially 1996 to 2010). It also describes much longer time scale Atlantic multidecadal ocean variability (AMV), including the extreme pre-greenhouse-gas northern warming of the 1930s to 1960s. The space-time structure of the wind forcing associated with a blocked regime leads to weaker ocean gyres and weaker heat exchange, both of which contribute to the warm phase of AMV.

Hakkinen, Sirpa↗

NASA NTRSDate not supplied

Optimizing Single Nuclei Sequencing of Brain Samples From Space Flown Mice Across Age and Strain

The NASA GeneLab Sample Processing Laboratory offers high-throughput sequencing services to NASA-funded space biology researchers. Space biology studies have specific challenges such as low sample numbers, introducing susceptibility to batch effects from sample handling. These issues are compounded by complex protocols such as single-nuclei isolation and sequencing, which has recently become an attractive methodology for assessing the cellular diversity within spaceflight samples. High quality single-nuclei sequencing requires reproducible protocols to dissociate tissue and generate clean suspension of intact single nuclei. Producing single-nuclei suspension from brain tissue is particularly challenging due to cell type heterogeneity and the myelin sheath that carries over into the nuclei suspension as debris. Current procedures tend to be time consuming and sometimes include steps that can alter gene expression and create cell-type bias. Commercially available nuclei isolation kits, such as the 10X Genomics nuclei isolation kit, offers a streamlined way to process samples for nuclei isolation, thereby minimizing batch effects and enabling reproducibility. In this study, we report on the performance of the 10X Genomics nuclei isolation kit and Chromium Next GEM Single Cell Multiome ATAC + Gene Expression kit to generate sequencing libraries from space-flown mouse brain samples. Single nuclei sequencing was performed on frozen mouse brain tissue from two spaceflight missions, Rodent Research-10 (RR-10) and RR Reference Mission-2 (RRRM-2). RR-10 mice were female B6129SF2/J, euthanized at 18-19 weeks whereas RRRM-2 mice were female C57BL/6NTac, euthanized at 20 or 37 weeks. Sequencing data was processed using standard GeneLab data processing pipelines. We report evaluation of the performance of the 10X Genomics nuclei isolation kit for spaceflight samples from mouse brain, and evaluation of reproducibility across different mouse strains and age groups. We also report preliminary scientific results including cell type inference, cell clustering, and differentially expressed genes and pathways between spaceflight and ground control samples.

RR-10↗

NASA NTRS2000

Analysis of the PKS0637-752 X-Ray Jet System

The X-ray jet emitted from the quasar PKS0637-752 is the largest and most luminous detected to date. It extends 10 arcsec west of the nucleus, and is coincident with GHz radio jet emission in this region. If the individual X-ray/optical/radio knots in this jet were detected as isolated objects, they might be classified as BL Lac objects or quasars. We present a detailed analysis of the Chandra observations of this system, including a search for an intra-cluster medium to confine the jet, and limits to X-ray emission from the eastern radio knot and past the bend of the radio jet to the northwest. The projection in the plane of the sky implies that the X-ray jet is an aligned extension of the pc-scale jet, for which VLBI/VSOP observations show super-luminal motion with an apparent velocity of 11c. In this case, the X-ray jet is of order 1 Mpc in length, and explaining the X-ray emission mechanism presents new challenges.

Schwartz, D. A.↗

NASA NTRS1982

Merging LANDSAT Derived Land Covers into Quad-referenced Geographic Information Systems

An approach for merging multiscene LANDSAT data bases into existing geographic information systems having 5-second or smaller cells is described. The approach uses the output from the State of Maryland's UNIVAC 1180-based LANDSAT classification program ASTEP (Algorithm Simulation Test and Evaluation) developed by NASA. The structure of the technique was designed to address the problems that emerged as part of the LANDSAT classification of the 64,000 square mile Chesapeake water shed involving twelve scenes. The removal of overlap among adjacent scenes, the crossreferencing of ground control points, and the isolation of the appropriate pixels from the LANDSAT data base for subsequent positioning into a file containing ancillary data referenced to a specific USGS 7 1/2 minute quadrangle sheet are described. Examples illustrate the clustering of classified LANDSAT pixels to define the dominant land use for each of 8,100 cells within a series of quadrangle sheets distributed over the State of Maryland. The approach uses a hard copy terminal tied to an ASTEP algorithm through telephone lines. A coordinate digitizing board for inputing the position of ground control points is also valuable, although manual measurements are possible. The approach is quite efficient and should be especially attractive for use on regional scale studies.

White, J. M.↗

NASA NTRS1993

Nuclear winds in active elliptical galaxies. I - Interaction

The interaction of a supersonic wind generated by an active nucleus, a nuclear wind, with the hot interstellar medium of an elliptical host galaxy is investigated. We survey the basic time and spatial scales of this interaction through a study covering the range of probable wind and galaxy parameters. The evolving wind/ISM interaction is detailed, with the conclusion that a true equilibrium state is never possible due to long cooling times. Alteration of the wind by mass loading is considered, and a relationship between nuclear winds and central stellar clusters in this context is outlined. The nuclear wind will fundamentally alter the interstellar medium of the host galaxy. Powerful radio galaxies and quasars can evacuate the entire ISM of their host galaxy. In an isolated elliptical galaxy, winds from moderately powerful radio galaxies will either be confined to within about a kpc or evacuate the entire hot ISM. Even in the relatively high pressure ISM of elliptical galaxies winds containing only 1 percent-10 percent of the radiant luminosity of the active nucleus will extend to the narrow-line region. Therefore, nuclear winds are likely to control the properties of the narrow-line emission.

Smith, Steven J.↗

NASA NTRS2010

Cosmic Infrared Background Fluctuations in Deep Spitzer Infrared Array Camera Images: Data Processing and Analysis

This paper provides a detailed description of the data reduction and analysis procedures that have been employed in our previous studies of spatial fluctuation of the cosmic infrared background (CIB) using deep Spitzer Infrared Array Camera observations. The self-calibration we apply removes a strong instrumental signal from the fluctuations that would otherwise corrupt the results. The procedures and results for masking bright sources and modeling faint sources down to levels set by the instrumental noise are presented. Various tests are performed to demonstrate that the resulting power spectra of these fields are not dominated by instrumental or procedural effects. These tests indicate that the large-scale ([greater, similar]30') fluctuations that remain in the deepest fields are not directly related to the galaxies that are bright enough to be individually detected. We provide the parameterization of these power spectra in terms of separate instrument noise, shot noise, and power-law components. We discuss the relationship between fluctuations measured at different wavelengths and depths, and the relations between constraints on the mean intensity of the CIB and its fluctuation spectrum. Consistent with growing evidence that the [approx]1-5 [mu]m mean intensity of the CIB may not be as far above the integrated emission of resolved galaxies as has been reported in some analyses of DIRBE and IRTS observations, our measurements of spatial fluctuations of the CIB intensity indicate the mean emission from the objects producing the fluctuations is quite low ([greater, similar]1 nW m-2 sr-1 at 3-5 [mu]m), and thus consistent with current [gamma]-ray absorption constraints. The source of the fluctuations may be high-z Population III objects, or a more local component of very low luminosity objects with clustering properties that differ from the resolved galaxies. Finally, we discuss the prospects of the upcoming space-based surveys to directly measure the epochs inhabited by the populations producing these source-subtracted CIB fluctuations, and to isolate the individual fluxes of these populations.

Arendt, Richard↗

NASA NTRS2014

A Classification Scheme for Young Stellar Objects Using the WIDE-FIELD INFRARED SURVEY EXPLORER ALLWISE Catalog: Revealing Low-Density Star Formation in the Outer Galaxy

We present an assessment of the performance of WISE and the AllWISE data release in a section of the Galactic Plane. We lay out an approach to increasing the reliability of point source photometry extracted from the AllWISE catalog in Galactic Plane regions using parameters provided in the catalog. We use the resulting catalog to construct a new, revised young star detection and classification scheme combining WISE and 2MASS near and mid-infrared colors and magnitudes and test it in a section of the Outer Milky Way. The clustering properties of the candidate Class I and II stars using a nearest neighbor density calculation and the two-point correlation function suggest that the majority of stars do form in massive star forming regions, and any isolated mode of star formation is at most a small fraction of the total star forming output of the Galaxy. We also show that the isolated component may be very small and could represent the tail end of a single mechanism of star formation in line with models of molecular cloud collapse with supersonic turbulence and not a separate mode all to itself.

WIDE-FIELD↗

NASA NTRS1992

Research in computational fluid dynamics and analysis of algorithms

Recently, higher-order compact schemes have seen increasing use in the DNS (Direct Numerical Simulations) of the Navier-Stokes equations. Although they do not have the spatial resolution of spectral methods, they offer significant increases in accuracy over conventional second order methods. They can be used on any smooth grid, and do not have an overly restrictive CFL dependence as compared with the O(N(exp -2)) CFL dependence observed in Chebyshev spectral methods on finite domains. In addition, they are generally more robust and less costly than spectral methods. The issue of the relative cost of higher-order schemes (accuracy weighted against physical and numerical cost) is a far more complex issue, depending ultimately on what features of the solution are sought and how accurately they must be resolved. In any event, the further development of the underlying stability theory of these schemes is important. The approach of devising suitable boundary clusters and then testing them with various stability techniques (such as finding the norm) is entirely the wrong approach when dealing with high-order methods. Very seldom are high-order boundary closures stable, making them difficult to isolate. An alternative approach is to begin with a norm which satisfies all the stability criteria for the hyperbolic system, and look for the boundary closure forms which will match the norm exactly. This method was used recently by Strand to isolate stable boundary closure schemes for the explicit central fourth- and sixth-order schemes. The norm used was an energy norm mimicking the norm for the differential equations. Further research should be devoted to BC for high order schemes in order to make sure that the results obtained are reliable. The compact fourth order and sixth order finite difference scheme had been incorporated into a code to simulate flow past circular cylinders. This code will serve as a verification of the full spectral codes. A detailed stability analysis by Carpenter (from the fluid Mechanics Division) and Gottlieb gave analytic conditions for stability as well as asymptotic stability. This had been incorporated in the code in form of stable boundary conditions. Effects of the cylinder rotations had been studied. The results differ from the known theoretical results. We are in the middle of analyzing the results. A detailed analysis of the effects of the heating of the cylinder on the shedding frequency had been studied using the above schemes. It has been found that the shedding frequency decreases when the wire was heated. Experimental work is being carried out to affirm this result.

Gottlieb, David↗

NASA NTRS2016

An Efficient, FPGA-Based, Cluster Detection Algorithm Implementation for a Strip Detector Readout System in a Time Projection Chamber Polarimeter

A fundamental challenge in a spaceborne application of a gas-based Time Projection Chamber (TPC) for observation of X-ray polarization is handling the large amount of data collected. The TPC polarimeter described uses the APV-25 Application Specific Integrated Circuit (ASIC) to readout a strip detector. Two dimensional photoelectron track images are created with a time projection technique and used to determine the polarization of the incident X-rays. The detector produces a 128x30 pixel image per photon interaction with each pixel registering 12 bits of collected charge. This creates challenging requirements for data storage and downlink bandwidth with only a modest incidence of photons and can have a significant impact on the overall mission cost. An approach is described for locating and isolating the photoelectron track within the detector image, yielding a much smaller data product, typically between 8x8 pixels and 20x20 pixels. This approach is implemented using a Microsemi RT-ProASIC3-3000 Field-Programmable Gate Array (FPGA), clocked at 20 MHz and utilizing 10.7k logic gates (14% of FPGA), 20 Block RAMs (17% of FPGA), and no external RAM. Results will be presented, demonstrating successful photoelectron track cluster detection with minimal impact to detector dead-time.

Polarimeter↗

NASA NTRS1999

Capella: Structure and Abundances

This grant covers the analysis of ASCA spectra of the cool star binary system Capella. This project has also required the analysis of simultaneous EUVE data. The ASCA spectrum of Capella could not be fit with standard models; by imposing models based on strong lines observed with EUVE, a problem wavelength region was identified. Correcting the problem required calculations of atomic collision strengths of higher principal quantum number than had ever been calculated, resulting in a paper in process by Liedahl and Brickhouse. With these new models applied to the ASCA spectrum, better fits were obtained. While solar abundance ratios are generally consistent with the ASCA data, the ratio of Ne/Fe is three to four times lower than solar photospheric values. Whether there is a general First Ionization Potential (FIP) effect or a specific neon anomaly cannot be determined from these data. Detailed discussion has been provided to NASA in the most recent annual report (1997). Two poster presentations have been made regarding modeling requirements. A substantial paper is in the final revision form, following review by six co-authors. The results of this work have wide implications, since the newly calculated emission lines almost certainly contribute to other problems in fitting not only other stellar spectra, but also composite supernova remnants, galaxies, and cooling flow clusters of galaxies. Furthermore, Liedahl and Brickhouse have identified other species for which lines of a similar nature (high principal quantum number) will contribute significant flux. For moderate resolution X-ray spectra, lines left out of the models in relatively isolated bands, will be attributed to continuum flux by spectral fitting engines, causing errors in line-to-continuum ratios. Thus addressing the general theoretical problem is of crucial importance.

Brickhouse, Nancy S.↗

NASA NTRS1994

A violent interaction between the dwarf galaxy UGC 7636 and the giant elliptical galaxy NGC 4472

We present new U, B, R, and H I imagery of the Virgo Cluster giant elliptical galaxy NGC 4472 and its interacting dwarf companion galaxy UGC 7636. Using a composite image reconstruction technique, we show that a trail of debris approx. 5 arcmin in length and approx. 1 arcmin in width (30x6 kpc for a Virgo cluster distance of 20 Mpc) is projected northward from the dwarf galaxy. A cloud of H I is projected along the northwest edge of the debris between the dwarf and gE. The dwarf's nuclear morphology is irregular and bow-shaped on what appears to be its leading edge. Apart from a number of isolated blue regions, most of of the trailing debris is similar in color to the dwarf's nucleus. Only a modest enhancement of star formation appears to have been induced by the interaction. Although separated by 15 kpc, the H I and stellar morphologies are remarkably similar. The stars and H I appear to have been tidally distorted in situ, prior to the cloud's removal by ram pressure. If the H I has maintained its shape by magnetic support, a magnetic field strength an order of magnitude larger than the galaxy's is required. Ram pressure deceleration due to the cloud's motion through NGC 4472's x-ray-emitting interstellar medium shold be sufficient for the cloud to become gravitationally bound to NGC 4472. The H I cloud is not self-gravitating and may fragment and be destroyed in the interaction. UGC 7636 will probably be disrupted by NGC 4472's strong tidal forces; the stellar debris will disperse into the Virgo cluster or become bound to NGC 4472's halo on eccentric orbits. The debris captured in the collision will have a negligible impact on NGC 4472's stellar and gaseous content. On the other hand, if similar interactions are common in giant elliptical galaxies, they could alter or deplete surrounding dwarf galaxy populations, fuel bursts of nuclear activity, and perhaps provide a source of magnetic energy to their interstellar media.

Mcnamara, Brian R.↗

NASA NTRS1988

A 21 cm survey of the Pisces-Perseus supercluster. III - The region north of +38 degrees

As part of a comprehensive survey of galaxies in the region of the Pisces-Perseus supercluster and its surroundings, 21-cm line observations obtained with the NRAO 91-m telescope are presented for 383 galaxies in the right ascension range from 22 to 10 hr and north of +38 deg declination. Recent improvements to the Green Bank receiver/feed system have dramatically raised detection rates at the distance of Pisces-Perseus (cz = +5000 km/s). The present study has contributed to double the number of known redshifts outside rich clusters in this section of the sky. The H I content of the current sample, as expressed in terms of the H I mass expected for a galaxy of the same optical size and morphology, matches the standard of normalcy established for isolated galaxies.

Haynes, Martha P.↗