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At least 127 records · Page 7

Autonomous adaptive data acquisition for scanning hyperspectral imaging

Non-invasive and label-free spectral microscopy (spectromicroscopy) techniques can provide quantitative biochemical information complementary to genomic sequencing, transcriptomic profiling, and proteomic analyses. However, spectromicroscopy techniques generate high-dimensional data; acquisition of a single spectral image can range from tens of minutes to hours, depending on the desired spatial resolution and the image size. This substantially limits the timescales of observable transient biological processes. To address this challenge and move spectromicroscopy towards efficient real-time spatiochemical imaging, we developed a grid-less autonomous adaptive sampling method. Our method substantially decreases image acquisition time while increasing sampling density in regions of steeper physico-chemical gradients. When implemented with scanning Fourier Transform infrared spectromicroscopy experiments, this grid-less adaptive sampling approach outperformed standard uniform grid sampling in a two-component chemical model system and in a complex biological sample, Caenorhabditis elegans. We quantitatively and qualitatively assess the efficiency of data acquisition using performance metrics and multivariate infrared spectral analysis, respectively.

47 OTHER INSTRUMENTATION↗

In situ plant materials hyperspectral imaging by multimodal scattering near-field optical microscopy

Plant cells are elaborate three-dimensional polymer nano-constructs with complex chemistry. The bulk response of plants to light, in the far-field, is ultimately encoded by optical scattering from these nano-constructs. Their chemical and physical properties may be acquired through their interaction with a modulated nano-tip using scattering scanning near-field optical microscopy. Here, using this technique, we present 20 nm spatial resolution mechanical, spectral and optical mappings of plant cell walls. We first address the problem of plant polymers tracking through pretreatment and processing. Specifically, cellulose and lignin footprints are traced within a set of delignified specimen, establishing the factors hindering complete removal of lignin, an important industrial polymer. Furthermore, we determine the frequency dependent dielectric function ${\epsilon }(\omega)={(n+ik)}^{2}$ of plant material in the range 28 ≤ ω ≤ 58 THz, and show how the environmental chemical variation is imprinted in the nanoscale variability of n and k . This nanometrology is a promise for further progress in the development of plant-based (meta-)materials.

36 MATERIALS SCIENCE↗

A Neural Differential Equation Formulation for Modeling Atmospheric Effects in Hyperspectral Images

Atmospheric correction is the process for removing atmospheric effects from spectral data; a necessary step for recovering salient spectral properties. The complex interactions between the atmosphere and light are dominated by absorbance and scattering physics. Existing methods for modeling atmospheric interactions typically rely on deep knowledge of relevant environmental conditions and high-fidelity numerical simulations of the governing physics in order to obtain accurate estimates of these effects. Additionally, existing approaches often require a subject matter expert for pre/post-processing of the data. Model-based approaches for removing atmospheric effects struggle in situations where such domain expertise is not available, and require significant human effort and computational power even when that expertise is available. In contrast, we propose a data-driven approach the uses Neural Differential Equations (NDEs) to accurately learn the interactions between electromagnetic radiation and the atmospheric without access to location specific environmental information. Once trained, the NDE can be applied bi-directionally; to apply or remove atmospheric effects. We demonstrate the effectiveness and utility of these techniques on an example multi-spectral scene.

Koch, James V.↗

Hyperspectral imaging of exciton confinement within a moiré unit cell with a subnanometer electron probe

Electronic and optical excitations in two-dimensional systems are distinctly sensitive to the presence of a moiré superlattice. Here we used cryogenic transmission electron microscopy and spectroscopy to simultaneously image the structural reconstruction and associated localization of the lowest-energy intralayer exciton in a rotationally aligned WS 2 -WSe 2 moiré superlattice. In conjunction with optical spectroscopy and ab initio calculations, we determined that the exciton center-of-mass wave function is confined to a radius of approximately 2 nanometers around the highest-energy stacking site in the moiré unit cell. Our results provide direct evidence that atomic reconstructions lead to the strongly confining moiré potentials and that engineering strain at the nanoscale will enable new types of excitonic lattices.

36 MATERIALS SCIENCE↗

Dynamic descriptors for contextual classification of remotely sensed hyperspectral image data analysis

The extended CIE transformation procedure of Chiou (1984) is applied to five sets of remotely sensed 0.4-2.5-micron spectrometric data on field crops including winter and spring wheat, corn, and soybeans) obtained at the Purdue University Laboratory for Applications of - Remote Sensing during 1977-1980 using the techniques described by Hinzman (1981). The results are presented in tables and chromaticity diagrams and it is found that each crop has an identifiable time-variant spectral characteristic permitting determination of seasonal growth patterns. The applicability of the method to data from airborne and spaceborne imaging spectrometers is indicated.

Chiou, W. C., Sr.↗

Hyperspectral Image Analysis Program

Information on imaging spectrometry is given in the forms of outlines, graphs, and charts. Topics covered include impacts on science users, program objectives, expert systems for imaging spectrometry, and imaging spectrometer data analysis methods.

Source record↗

Near-Infrared Hyperspectral Image Cubes of Mars during the 1999 Opposition

We used the Goddard Space Flight Center, Acousto-Optic Tunable Filter (AOTF) Camera to obtain near-IR spectral image sets of Mars over the 1.6-3.6 micron region during the April 1999 opposition. A complete image set consists of 280 images with a spectral full-width-half maximum of 10 wavenumbers (fixed in frequency), 90 images in H-band (1.55-1.80 micron), 115 images in K-band (1.95-2.50 micron) and 75 images in L-band (2.90-3.70 micron). The short-wavelength limit is set by transmission of AOTF cell and long-wavelength limit is imposed by sensitivity of PICNIC, 256x256, HgCdTe array detector. We will discuss the new array performance and provide preliminary interpretations of some of these results. These measurements were part of a 4-observatory coordinated effort whose overall objective was to assemble a photometrically calibrated, spectrally complete ground-based image cube over the visible and near-IR spectral region. To accomplish this, four observing teams conducted the investigations with instruments spanning 0.4 to 5.0 micron. The instruments and observing facilities were (a) AOTF camera at Apache Point Observatory, 3.5m, f/10, Nasymth focus (this abstract). Primary science targets included the 3 micron water-of hydration feature and CO2, H2O ice (polar regions and clouds); (b) Visible/NIR interference-filter (24 filters) camera at Lowell Observatory, 72" telescope. 430-1050 nm. Science targets were Fe(2+), Fe(3+) mineralogy and coarse grain hematite search; (c) NMSU Tortugas Mountain Observatory, 60 cm telescope, CCD photometry with same filter set as Lowell; (d) KPNO cryogenic grating/slit spectrometer (CRSP/SALLY) at KPNO 2.1 m, f/15 Cassegrain focus (see abstract by D. Glenar, et. al., this meeting). Selected wavelengths in 3-5 micron region (L, M band). Science targets included water-of-hydration feature (3-4 micron long wave extension) and sulfate mineralogy. Observers participating in this campaign included Dave Glenar, John Hillman, Gordon Bjoraker and Fred Espenak from GSFC, Nancy Chanover, Jim Murphy and A. S. MurTell from NMSU, Leslie Young from BU, Diana Blaney from JPL and Dick Joyce from KPNO.

Hillman, John J.↗

EO-1/Hyperion Hyperspectral Imager Design, Development, Characterization, and Calibration

The Hyperion Imaging Spectrometer is one of three principal instruments aboard the EO-1 spacecraft. Its mission as a technology demonstrator is to evaluate on-orbit issues for imaging spectroscopy and to assess the capabilities of a spacebased imaging spectrometer for earth science and earth observation missions. The instrument provides earth imagery at 30 meter spatial resolution, 7.5 km swath width in 220 contiguous spectral bands at 10 nm spectral resolution. Spectral range is from 0.4 gm to 2.5 gm. The instrument includes internal and solar calibration sub-systems. This paper will review the design, construction and calibration of the Hyperion instrument. The on-orbit plans and operations will be presented along with updated calibration and characterization measurements.

Folkman, Mark↗

Satellite Hyperspectral Imaging Simulation

Simulations of generic pushbroom satellite hyperspetral sensors have been performed to evaluate the potential performance and validation techniques for satellite systems such as COIS (NEMO), Warfighter-1 (OrbView-4), and Hyperion (EO-1). The simulaitons start with a generation of synthetic scenes form material maps of studied terrain. Scene-reflected radiance is corrected for atmospheric effects and convolved with sensor spectral response uwing MODTRAN 4 radiance and transmission calculations. Scene images are further convolved with point spread functions derived from Optical Transfer Functions (OTF's) of the sensor system. Photon noise and detector/electronics noise are added to the simulated images, which are also finally quantized to the sensor bit resolution. Studied scenes include bridges and straight roads used for evaluation of sensor spatial resolution, as well as fields of minerals, vegetation, and manmade materials used for evaluation of sensor radiometric response and sensitivity. The scenes are simulated with various seasons and weather conditions. Signal-to-noise ratos and expected performance are estimated for typica satellite system specifications and are discussed for all the scenes.

Zanoni, Vicki↗

Design and Construction of a Field Capable Snapshot Hyperspectral Imaging Spectrometer

The computed-tomography imaging spectrometer (CTIS) is a device which captures the spatial and spectral content of a rapidly evolving same in a single image frame. The most recent CTIS design is optically all reflective and uses as its dispersive device a stated the-art reflective computer generated hologram (CGH). This project focuses on the instrument's transition from laboratory to field. This design will enable the CTIS to withstand a harsh desert environment. The system is modeled in optical design software using a tolerance analysis. The tolerances guide the design of the athermal mount and component parts. The parts are assembled into a working mount shell where the performance of the mounts is tested for thermal integrity. An interferometric analysis of the reflective CGH is also performed.

Arik, Glenda H.↗