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At least 127 records · Page 7

Extension of the Kohn-Sham formulation of density functional theory to finite temperature

Based on Mermin's extension of the Hohenberg and Kohn theorems to non-zero temperature, the Kohn-Sham formulation of density functional theory (KS-DFT) is generalized to finite temperature. Here, we show that present formulations are inconsistent with Mermin's functional containing expressions, in particular describing the Coulomb energy, that defy derivation and are even in violation of rules of logical inference. More; current methodology is in violation of fundamental laws of both quantum and classical mechanics. Based on this feature, we demonstrate the impossibility of extending the KS formalism to finite temperature through the self-consistent solutions of the single-particle Schrödinger equation of T>0. Guided by the form of Mermin's functional that depends on the eigenstates of a Hamiltonian, determined at T>0 we base our extension of KS-DFT on the determination of the excited states of a non-interacting system at the zero of temperature. The resulting formulation is consistent with that of Mermin constructing the free energy at T>0 in terms of the excited states of a non-interacting Hamiltonian (system) that, within the KS formalism, are described by Slater determinants. To determine the excited states at T=0 use is made of the extension of the Hohenberg and Kohn theorems to excited states presented in previous work applied here to a non-interacting collection of replicas of a non-interacting N-particle system, whose ground state density is taken to match that of K non-interacting replicas of an interacting N-particle system at T>0. The formalism allows for an ever denser population of the excitation spectrum of a Hamiltonian, within the KS approximation. The form of the auxiliary potential, (Kohn-Sham potential), is formally identical to that in the ground state formalism with the contribution of the Coulomb energy provided by the derivative of the Coulomb energy in all excited states taken into account. Once the excited states are determined, the minimum of the free energy within the KS formalism follows immediately in the form of Mermin's functional, but with the exact excited states in that functional represented by Slater determinants obtained through self-consistency conditions at the zero of temperature. Lastly, it is emphasized that, in departure from all existing formulations, no self-consistency conditions are implemented at finite T; as we show, in fact, such formulations are rigorously blocked.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

A Collaborative Extensible User Environment for Simulation and Knowledge Management

In scientific simulation, scientists use measured data to create numerical models, execute simulations and analyze results from advanced simulators executing on high performance computing platforms. This process usually requires a team of scientists collaborating on data collection, model creation and analysis, and on authorship of publications and data. This paper shows that scientific teams can benefit from a user environment called Akuna that permits subsurface scientists in disparate locations to collaborate on numerical modeling and analysis projects. The Akuna user environment is built on the Velo framework that provides both a rich client environment for conducting and analyzing simulations and a Web environment for data sharing and annotation. Akuna is an extensible toolset that integrates with Velo, and is designed to support any type of simulator. This is achieved through data-driven user interface generation, use of a customizable knowledge management platform, and an extensible framework for simulation execution, monitoring and analysis. This paper describes how the customized Velo content management system and the Akuna toolset are used to integrate and enhance an effective collaborative research and application environment. The extensible architecture of Akuna is also described and demonstrates its usage for creation and execution of a 3D subsurface simulation.

collaborative science tools↗

A Fast Algorithm for the Convolution of Functions with Compact Support Using Fourier Extensions

In this paper, we present a new algorithm for computing the convolution of two compactly supported functions. The algorithm approximates the functions to be convolved using Fourier extensions and then uses the fast Fourier transform to efficiently compute Fourier extension approximations to the pieces of the result. Finally, the complexity of the algorithm is O(N(log N) 2 ), where N is the number of degrees of freedom used in each of the Fourier extensions.

97 MATHEMATICS AND COMPUTING↗

Adapting Extension and Outreach Content to Audiences' Educational Interests

For various, largely unknown reasons, decision makers do not have equal interest in all Extension and outreach topics pertinent to a particular concept. This situation hampers Extension's ability to effectively deliver information and efficiently allocate limited resources. Using survey data, we identified heterogeneous preference for various topics related to the concept of woody bioenergy, our case study subject, and built profiles of forestland owners who expressed interest in topics that received above-average and below-average preference rates. Here, given our results, we argue for using this approach in objectively ranking audiences' educational interests in various forest and nonforest products and services and subsequently allocating time, space, and other Extension resources to the topics of interest.

99 GENERAL AND MISCELLANEOUS↗

TECHNICAL BACKGROUND FOR THE UPDATE AND EXTENSION OF THE TIME-DEPENDENT ALLOWABLE STRESSES OF TYPE 304H AND 316H STAINLESS STEELS

Type 304H and 316H stainless steels are codified in the ASME Boiler and Pressure Vessel Code for Section III, Division 5, Class A construction for up to 1500F (816C) and 300,000 hours. Extension of the design lifetimes to 500,000 hours has been undertaken by various research projects and by the ASME Section III, Division 5 Code Committees. Due to a long-standing issue related to non-classical creep behavior on the use of the time to the onset of tertiary creep as one of the time-dependent allowable stress criteria, little progress was made in the extension of the time-dependent allowable stresses for Type 304H and 316H stainless steels. A recent effort by Dabrow and Nestell (Impact of Tertiary Creep on Time Dependent Allowable Stresses for Type 304H and 316H Stainless Steels, Report 0300-0003-RPT-001, MPR Associates, Alexandria, VA, 2020) has provided a rational method for the treatment of the highly variable data for the time to onset of tertiary creep. In this paper, the background formulas for determining the time-dependent allowable stress values of Type 304H and 316H stainless steels, as assembled from relevant project work, are presented. These updates and extensions are being recommended to the ASME Code committees for approval, and are subject to change upon feedback from ASME Section III Code committees.

304/316 life extension↗

The structure of S . lividans acetoacetyl-CoA synthetase shows a novel interaction between the C-terminal extension and the N-terminal domain

The adenosine monoposphate-forming acyl-CoA synthetase enzymes catalyze a two-step reaction that involves the initial formation of an acyl adenylate that reacts in a second partial reaction to form a thioester between the acyl substrate and CoA. These enzymes utilize a Domain Alternation catalytic mechanism, whereby a ~110 residue C-terminal domain rotates by 140° to form distinct catalytic conformations for the two partial reactions. In this paper, the structure of an acetoacetyl-CoA synthetase (AacS) is presented that illustrates a novel aspect of this C-terminal domain. Specifically, several acetyl- and acetoacetyl-CoA synthetases contain a 30-residue extension on the C-terminus compared to other members of this family. Finally, whereas residues from this extension are disordered in prior structures, the AacS structure shows that residues from this extension may interact with key catalytic residues from the N-terminal domain.

59 BASIC BIOLOGICAL SCIENCES↗

On the Ultrasolvability of p-Extensions of an Abelian Group by a Cyclic Kernel

The paper contains a solution of A. V. Yakovlev’s problem in the embedding theory for p-extensions of odd order with a cyclic normal subgroup and an Abelian quotient group: for such nonsplit extensions there exists a realization for the quotient group as a Galois group over number fields such that the corresponding embedding problem is ultrasolvable (i.e., this embedding problem is solvable and has only fields as solutions). A solution for embedding problems of p-extensions of odd order with kernel of order p and with a quotient group that is represented by a direct product of its proper subgroups is also given – this is a generalization for p > 2 of an analogous result for p = 2 due to A. Ledet.

97 MATHEMATICS AND COMPUTING↗

Construction of a Cyclic Extension of Degree p{sup 2} for a Complete Field

The aim of the paper is to construct an embedding of a given cyclic extension of degree p of a complete discrete valuation field of characteristic 0 with an arbitrary residue field of characteristic p > 0 into a cyclic extension of degree p{sup 2}. The result extends the construction obtained by S. V. Vostokov and I. B. Zhukov in terms of Witt vectors, to a wider interval of values for the ramification jump of the original field extension.

97 MATHEMATICS AND COMPUTING↗

Self-adjoint extensions for confined electrons: From a particle in a spherical cavity to the hydrogen atom in a sphere and on a cone

In a recent study of the self-adjoint extensions of the Hamiltonian of a particle confined to a finite region of space, in which we generalized the Heisenberg uncertainty relation to a finite volume, we encountered bound states localized at the wall of the cavity. In this paper, we study this situation in detail both for a free particle and for a hydrogen atom centered in a spherical cavity. For appropriate values of the self-adjoint extension parameter, the bound states localized at the wall resonate with the standard hydrogen bound states. We also examine the accidental symmetry generated by the Runge-Lenz vector, which is explicitly broken in a spherical cavity with general Robin boundary conditions. However, for specific radii of the confining sphere, a remnant of the accidental symmetry persists. The same is true for an electron moving on the surface of a finite circular cone, bound to its tip by a 1/r potential. - Highlights: Black-Right-Pointing-Pointer The spectrum of confined electrons and self-adjoint extension parameter. Black-Right-Pointing-Pointer Cavity resonances between hydrogen bound states and states localized at the wall. Black-Right-Pointing-Pointer Accidental symmetry for hydrogen atom confined in a sphere or on a cone.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Multistep DBT and regular rational extensions of the isotonic oscillator

In some recent articles, we developed a new systematic approach to generate solvable rational extensions of primary translationally shape invariant potentials. In this generalized SUSY QM partnership, the DBTs are built on the excited states Riccati-Schroedinger (RS) functions regularized via specific discrete symmetries of the considered potential. In the present paper, we prove that this scheme can be extended in a multistep formulation. Applying this scheme to the isotonic oscillator, we obtain new towers of regular rational extensions of this potential which are strictly isospectral to it. We give explicit expressions for their eigenstates which are associated to the recently discovered exceptional Laguerre polynomials and show explicitly that these extensions inherit the shape invariance properties of the original potential. - Highlights: Black-Right-Pointing-Pointer Hamiltonian hierarchies via SUSY quantum partnership generalized to excited states. Black-Right-Pointing-Pointer Goes beyond the scope of the Crum and Krein-Adler theorems. Black-Right-Pointing-Pointer Complete proofs based on deconjugacy theorems and recurrency scheme. Black-Right-Pointing-Pointer Determinantal expressions for new exceptional Laguerre polynomials. Black-Right-Pointing-Pointer Proof of the hereditary character of the shape invariance.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Recombinant proteins incorporating short non-native extensions may display increased aggregation propensity as detected by high resolution NMR spectroscopy

Highlights: Black-Right-Pointing-Pointer Bile acid binding proteins from different constructs retain structural integrity. Black-Right-Pointing-Pointer NMR {sup 15}N-T{sub 1} relaxation data of BABPs show differences if LVPR extension is present. Black-Right-Pointing-Pointer Deviations from a {sup 15}N-T{sub 1}/molecular-weight calibration curve indicate aggregation. -- Abstract: The use of a recombinant protein to investigate the function of the native molecule requires that the former be obtained with the same amino acid sequence as the template. However, in many cases few additional residues are artificially introduced for cloning or purification purposes, possibly resulting in altered physico-chemical properties that may escape routine characterization. For example, increased aggregation propensity without visible protein precipitation is hardly detected by most analytical techniques but its investigation may be of great importance for optimizing the yield of recombinant protein production in biotechnological and structural biology applications. In this work we show that bile acid binding proteins incorporating the common C-terminal LeuValProArg extension display different hydrodynamic properties from those of the corresponding molecules without such additional amino acids. The proteins were produced enriched in nitrogen-15 for analysis via heteronuclear NMR spectroscopy. Residue-specific spin relaxation rates were measured and related to rotational tumbling time and molecular size. While the native-like recombinant proteins show spin-relaxation rates in agreement with those expected for monomeric globular proteins of their mass, our data indicate the presence of larger adducts for samples of proteins with very short amino acid extensions. The used approach is proposed as a further screening method for the quality assessment of biotechnological protein products.

60 APPLIED LIFE SCIENCES↗

More Accurate Definition of Clinical Target Volume Based on the Measurement of Microscopic Extensions of the Primary Tumor Toward the Uterus Body in International Federation of Gynecology and Obstetrics Ib-IIa Squamous Cell Carcinoma of the Cervix

Purpose: To more accurately define clinical target volume for cervical cancer radiation treatment planning by evaluating tumor microscopic extension toward the uterus body (METU) in International Federation of Gynecology and Obstetrics stage Ib-IIa squamous cell carcinoma of the cervix (SCCC). Patients and Methods: In this multicenter study, surgical resection specimens from 318 cases of stage Ib-IIa SCCC that underwent radical hysterectomy were included. Patients who had undergone preoperative chemotherapy, radiation, or both were excluded from this study. Microscopic extension of primary tumor toward the uterus body was measured. The association between other pathologic factors and METU was analyzed. Results: Microscopic extension toward the uterus body was not common, with only 12.3% of patients (39 of 318) demonstrating METU. The mean (±SD) distance of METU was 0.32 ± 1.079 mm (range, 0-10 mm). Lymphovascular space invasion was associated with METU distance and occurrence rate. A margin of 5 mm added to gross tumor would adequately cover 99.4% and 99% of the METU in the whole group and in patients with lymphovascular space invasion, respectively. Conclusion: According to our analysis of 318 SCCC specimens for METU, using a 5-mm gross tumor volume to clinical target volume margin in the direction of the uterus should be adequate for International Federation of Gynecology and Obstetrics stage Ib-IIa SCCC. Considering the discrepancy between imaging and pathologic methods in determining gross tumor volume extent, we recommend a safer 10-mm margin in the uterine direction as the standard for clinical practice when using MRI for contouring tumor volume.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Observing cosmic-ray extensive air showers with a silicon imaging detector

Extensive air showers induced from high-energy cosmic rays provide a window into understanding the most energetic phenomena in the universe. We present a new method for observing these showers using the silicon imaging detector Subaru Hyper Suprime-Cam (HSC). This method has the advantage of being able to measure individual secondary particles. When paired with a surface detector array, silicon imaging detectors like Subaru HSC will be useful for studying the properties of extensive air showers in detail. The following report outlines the first results of observing extensive air showers with Subaru HSC. The potential for reconstructing the incident direction of primary cosmic rays is demonstrated and possible interdisciplinary applications are discussed.

79 ASTRONOMY AND ASTROPHYSICS↗

Spectrum and extension of the inverse-Compton emission of the Crab Nebula from a combined Fermi -LAT and H.E.S.S. analysis

The Crab Nebula is a unique laboratory for studying the acceleration of electrons and positrons through their non-thermal radiation. Observations of very-high-energy γ rays from the Crab Nebula have provided important constraints for modelling its broadband emission. We present the first fully self-consistent analysis of the Crab Nebula’s γ-ray emission between 1 GeV and ∼100 TeV, that is, over five orders of magnitude in energy. Using the open-source software package GAMMAPY, we combined 11.4 yr of data from the Fermi Large Area Telescope and 80 h of High Energy Stereoscopic System (H.E.S.S.) data at the event level and provide a measurement of the spatial extension of the nebula and its energy spectrum. We find evidence for a shrinking of the nebula with increasing γ-ray energy. Furthermore, we fitted several phenomenological models to the measured data, finding that none of them can fully describe the spatial extension and the spectral energy distribution at the same time. Especially the extension measured at TeV energies appears too large when compared to the X-ray emission. Our measurements probe the structure of the magnetic field between the pulsar wind termination shock and the dust torus, and we conclude that the magnetic field strength decreases with increasing distance from the pulsar. We complement our study with a careful assessment of systematic uncertainties.

79 ASTRONOMY AND ASTROPHYSICS↗

Force-extension curves for broken-rod macromolecules: Dramatic effects of different probing methods for two and three rods

We study force-extension curves of a single semiflexible chain consisting of several rigid rods connected by flexible spacers. The atomic force microscopy and laser optical or magnetic tweezers apparatus stretching these rod-coil macromolecules are discussed. In addition, the stretching by external isotropic force is analyzed. The main attention is focused on computer simulation and analytical results. We demonstrate that the force-extension curves for rod-coil chains composed of two or three rods of equal length differ not only quantitatively but also qualitatively in different probe methods. These curves have an anomalous shape for a chain of two rods. End-to-end distributions of rod-coil chains are calculated by Monte Carlo method and compared with analytical equations. The influence of the spacer’s length on the force-extension curves in different probe methods is analyzed. The results can be useful for interpreting experiments on the stretching of rod-coil block-copolymers.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Flexible polyelectrolyte chain in a strong electrolyte solution: Insight into equilibrium properties and force-extension behavior from mesoscale simulation

Macromolecules with ionizable groups are ubiquitous in biological and synthetic systems. Due to the complex interaction between chain and electrostatic decorrelation lengths, both equilibrium properties and micro-mechanical response of dilute solutions of polyelectrolytes (PEs) are more complex than their neutral counterparts. In this paper, the bead-rod micromechanical description of a chain is used to perform hi-fidelity Brownian dynamics simulation of dilute PE solutions to ascertain the self-similar equilibrium behavior of PE chains with various linear charge densities, scaling of the Kuhn step length (l E ) with salt concentration c s and the force-extension behavior of the PE chain. In accord with earlier theoretical predictions, our results indicate that for a chain with n Kuhn segments, l E ~ c s -0.5 as linear charge density approaches 1/n. Moreover, the constant force ensemble simulation results accurately predict the initial non-linear force-extension region of PE chain recently measured via single chain experiments. Inspired by Cohen’s extraction of Warner’s force law from the inverse Langevin force law, a novel numerical scheme is developed to extract a new elastic force law for real chains from our discrete set of force-extension data similar to Padè expansion, which accurately depicts the initial non-linear region where the total Kuhn length is less than the thermal screening length.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Multipoint Lax operator algebras: almost-graded structure and central extensions

Recently, Lax operator algebras appeared as a new class of higher genus current-type algebras. Introduced by Krichever and Sheinman, they were based on Krichever's theory of Lax operators on algebraic curves. These algebras are almost-graded Lie algebras of currents on Riemann surfaces with marked points (in-points, out-points and Tyurin points). In a previous joint article with Sheinman, the author classified the local cocycles and associated almost-graded central extensions in the case of one in-point and one out-point. It was shown that the almost-graded extension is essentially unique. In this article the general case of Lax operator algebras corresponding to several in- and out-points is considered. As a first step they are shown to be almost-graded. The grading is given by splitting the marked points which are non-Tyurin points into in- and out-points. Next, classification results both for local and bounded cocycles are proved. The uniqueness theorem for almost-graded central extensions follows. To obtain this generalization additional techniques are needed which are presented in this article. Bibliography: 30 titles.

97 MATHEMATICS AND COMPUTING↗

The Linac Extension Area at the Advanced Photon Source

The Linac Extension Area has been developed into a beamline area for testing accelerator components and techniques. Beginning commissioning activities in February 2023, we have delivered the first electron beam to the Linac Extension Area at the Advanced Photon Source at 425 MeV. In the present work, we summarise the principal accelerator components and review safety controls of the Linac Extension Area.

47 OTHER INSTRUMENTATION↗