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At least 127 records · Page 7

Evolutionary models of interstellar chemistry

The goal of evolutionary models of interstellar chemistry is to understand how interstellar clouds came to be the way they are, how they will change with time, and to place them in an evolutionary sequence with other celestial objects such as stars. An improved Mark II version of an earlier model of chemistry in dynamically evolving clouds is presented. The Mark II model suggests that the conventional elemental C/O ratio less than one can explain the observed abundances of CI and the nondetection of O2 in dense clouds. Coupled chemical-dynamical models seem to have the potential to generate many observable discriminators of the evolutionary tracks. This is exciting, because, in general, purely dynamical models do not yield enough verifiable discriminators of the predicted tracks.

Prasad, Sheo S.↗

A homogeneous sample of binary galaxies: Basic observational properties

A survey of optical characteristics for 585 binary systems, satisfying a condition of apparent isolation on the sky, is presented. Influences of various selection effects distorting the average parameters of the sample are noted. The pair components display mutual similarity over all the global properties: luminosity, diameter, morphological type, mass-to-luminosity ratio, angular momentum etc., which is not due only to selection effects. The observed correlations must be caused by common origin of pair members. Some features (nuclear activity, color index) could acquire similarity during synchronous evolution of double galaxies. Despite the observed isolation, the sample of double systems is seriously contaminated by accidental pairs, and also by members of groups and clusters. After removing false pairs estimates of orbital mass-to-luminosity ratio range from 0 to 30 f(solar), with the mean value (7.8 plus or minus 0.7) f(solar). Binary galaxies possess nearly circular orbits with a typical eccentrity e = 0.25, probably resulting from evolutionary selection driven by component mergers under dynamical friction. The double-galaxy population with space abundance 0.12 plus or minus 0.02 and characteristic merger timescale 0.2 H(exp -1) may significantly influence the rate of dynamical evolution of galaxies.

Karachentsev, I. D.↗

Collisional Time Scales in the Kuiper Disk and Their Implications

We explore the rate of collisions among bodies in the present-day Kuiper Disk as a function of the total mass and population size structure of the disk. We find that collisional evolution is an important evolutionary process in the disk as a whole, and indeed, that it is likely the dominant evolutionary process beyond approx. 42 AU, where dynamical instability time scales exceed the age of the solar system. Two key findings we report from this modeling work are: that unless the disk's population structure is sharply truncated for radii smaller than approx. 1-2 km, collisions between comets and smaller debris are occurring so frequently in the disk, and with high enough velocities, that the small body (i.e., KM-class object) population in the disk has probably developed into a collisional cascade, thereby implying that the Kuiper Disk comets may not all be primordial, and that the rate of collisions of smaller bodies with larger 100 less R less 400 km objects (like 1992QB(sub 1) and its cohorts) is so low that there appears to be a dilemma in explaining how QB(sub 1)s could have grown by binary accretion in the disk as we know it. Given these findings, it appears that either the present-day paradigm for the formation of Kuiper Disk is failed in some fundamental respect, or that the present-day disk is no longer representative of the ancient structure from which it evolved. This in turn suggests the intriguing possibility that the present-day Kuiper Disk evolved through a more erosional stage reminiscent of the disks around the stars Beta Pictorus, alpha PsA, and alpha Lyr.

Stern, S. Alan↗

Hijacking a rapid and scalable metagenomic method reveals subgenome dynamics and evolution in polyploid plants

Premise: The genomes of polyploid plants archive the evolutionary events leading to their present forms. However, plant polyploid genomes present numerous hurdles to the genome comparison algorithms for classification of polyploid types and exploring genome dynamics. Methods: Here, the problem of intra- and inter-genome comparison for examining polyploid genomes is reframed as a metagenomic problem, enabling the use of the rapid and scalable MinHashing approach. To determine how types of polyploidy are described by this metagenomic approach, plant genomes were examined from across the polyploid spectrum for both k-mer composition and frequency with a range of k-mer sizes. In this approach, no subgenome-specific k-mers are identified; rather, whole-chromosome k-mer subspaces were utilized. Results: Given chromosome-scale genome assemblies with sufficient subgenome-specific repetitive element content, literature-verified subgenomic and genomic evolutionary relationships were revealed, including distinguishing auto- from allopolyploidy and putative progenitor genome assignment. The sequences responsible were the rapidly evolving landscape of transposable elements. An investigation into the MinHashing parameters revealed that the downsampled k-mer space (genomic signatures) produced excellent approximations of sequence similarity. Furthermore, the clustering approach used for comparison of the genomic signatures is scrutinized to ensure applicability of the metagenomics-based method. Discussion: The easily implementable and highly computationally efficient MinHashing-based sequence comparison strategy enables comparative subgenomics and genomics for large and complex polyploid plant genomes. Such comparisons provide evidence for polyploidy-type subgenomic assignments. In cases where subgenome-specific repeat signal may not be adequate given a chromosomes' global k-mer profile, alternative methods that are more specific but more computationally complex outperform this approach.

59 BASIC BIOLOGICAL SCIENCES↗

What has happened in the cores of globular clusters

It is found that some aspects of the observed data for globular cluster cores cannot be easily explained in terms of the existing theory of dynamical evolution. It is noted that globular clusters span only a factor of 40 in core mass, while ranging over a factor of 10 to the 6th in central density, an observation that cannot be explained as a selection effect. A strong correlation is found between the central density and the distance of a cluster from the galactic center. In addition, when cluster cores are evolved backward in time in their initial conditions, using the available theory of dynamical evolution, evidence emerges that many clusters have already undergone core collapse, for which no evolutionary theory exists. It is concluded that these results indicate the incompleteness of the theory of dynamical evolution.

Lightman, A. P.↗

The Solar Neighborhood. XLVII. Comparing M-dwarf Models with Hubble Space Telescope Dynamical Masses and Spectroscopy

We use HST/STIS optical spectroscopy of 10 M dwarfs in five closely separated binary systems to test models of M-dwarf structure and evolution. Individual dynamical masses ranging from 0.083 to 0.405 M {sub ⊙} for all stars are known from previous work. We first derive temperature, radius, luminosity, surface gravity, and metallicity by fitting the BT-Settl atmospheric models. We verify that our methodology agrees with empirical results from long-baseline optical interferometry for stars of similar spectral types. We then test whether or not evolutionary models can predict those quantities given the stars’ known dynamical masses and the conditions of coevality and equal metallicity within each binary system. We apply this test to five different evolutionary model sets: the Dartmouth models, the MESA/MIST models, the models of Baraffe et al., the PARSEC models, and the YaPSI models. We find marginal agreement between evolutionary model predictions and observations, with few cases where the models respect the condition of coevality in a self-consistent manner. We discuss the pros and cons of each family of models and compare their predictive power.

47 OTHER INSTRUMENTATION↗

Responses of Microbes to Modeled Space Radiation

The built environment of spaceships is host to a microbial community that affects crew and craft alike. While the static composition of this community has been characterized and its temporal dynamics examined, the mechanisms controlling its make-up and evolutionary trajectory are not understood. Systematic analyses of microbial diversity show consistent patterns in community composition and function. Understanding these patterns' ecological origins remains a significant challenge, as it requires connecting processes at varying temporal and spatial scales. However, it is clear that the state and trajectories of microbial communities are in-part determined by their physical environment. In this regard, the spaceflight environment includes numerous interacting factors that differentiate it from Earth environments, including an altered atmospheric composition, reduced gravity (and thus altered fluid dynamics), and increased ionizing radiation. These factors impart selective pressures on microbial communities that affect their evolutionary trajectories and thus the risks and benefits these communities represent to crew and craft. The radiation environment of space leads to chronic exposure to low doses and is difficult to mimic on Earth. Thus, little is known about how microbial communities in spacecraft will respond and evolve. Therefore, given the limitations of existing studies, we aim to empirically determine how exposure to low doses of ionizing radiation for thousands of cell divisions affects rates of mutation accumulation in bacteria and the trajectory of their evolution. In this way, we will provide a critical set of data for designing safe and robust space missions. Here we discuss our progress towards this aim, including the construction of exposure facilities, our culturing and analysis approach, and preliminary data.

radiation↗

Langley's CSI evolutionary model: Phase O

A testbed for the development of Controls Structures Interaction (CSI) technology to improve space science platform pointing is described. The evolutionary nature of the testbed will permit the study of global line-of-sight pointing in phases 0 and 1, whereas, multipayload pointing systems will be studied beginning with phase 2. The design, capabilities, and typical dynamic behavior of the phase 0 version of the CSI evolutionary model (CEM) is documented for investigator both internal and external to NASA. The model description includes line-of-sight pointing measurement, testbed structure, actuators, sensors, and real time computers, as well as finite element and state space models of major components.

Belvin, W. Keith↗

Structural dynamics model and response of the deployable reference configuration space station

The analytical models and results of a structural dynamics investigation of the reference initial operation and evolutionary configurations of the nine foot bay space station are presented. This investigation was carried out between April and August 1984 as part of a team effort to define a reference configuration for the first U.S. manned space station. The results presented herein serve as a guide, a point of departure and a standard for future NASA and contractor studies leading to the design of the Space Station. The reference initial operation configuration of the nine foot bay station was found to be very flexible, with its lowest mode between 0.096 and 0.138 Hertz depending on station attachments. However, for the transient load cases which were then available, internal member loads had positive margins of safety and preliminary results indicate that laboratory experiments which require quiescent conditions can be satisfied down to the order of 0.0001 g's.

Housner, J. M.↗

Evidence for the Evolution of Grain Properties in the NGC 2024 Star Forming Ridge

High-resolution images of the NGC 2024 molecular ridge in CS(2-1) and 3 mm continuum emission have been obtained using the Owens Valley millimeter array. The data are used to determine the temperature and dynamics of the ridge, and to ascertain the evolutionary state of the embedded protostars FIR2-7. Dust continuum emission is detected from all six FIR sources. The CS(2-1) follows the ridge closely, but does not always coincide with the FIR sources. Direct comparison of column density estimates derived from the CS and the dust emission in the ridge shows that for all FIR sources except FIR5 both methods are in agreement to within a factor of two, assuming a dust opacity k(sub 3 mm) = 0.01 cm(exp 2)/g. However, away from the FIR sources strong CS(1-0) emission is observed in several compact clumps which, with the above dust opacity, should have been detected in 3 mm dust continuum. The brightness temperature of the CS, approx. 40 K, rules out the possibility that the high line-to-continuum ratio is due to low gas temperatures; the discrepancy can be resolved if k(sub 3 mm) is a factor of 10 lower away from the FIR sources. A new high-resolution image of the 450-micron dust continuum emission obtained using the James Clerk Maxwell Telescope supports this hypothesis. These results suggest an evolution in the physical properties of the dust grains, possibly grain size, between quiescent regions in the ridge and the sites of active star formation.

Chandler, C. J.↗

Kinetic modeling of microbial growth, enzyme activity, and gene deletions: An integrated model of β-glucosidase function in Cellvibrio japonicus

Understanding the complex growth and metabolic dynamics in microorganisms requires advanced kinetic models containing both metabolic reactions and enzymatic regulation to predict phenotypic behaviors under different conditions and perturbations. Most current kinetic models lack gene expression dynamics and are separately calibrated to distinct media, which consequently makes them unable to account for genetic perturbations or multiple substrates. This challenge limits our ability to gain a comprehensive understanding of microbial processes towards advanced metabolic optimizations that are desired for many biotechnology applications. Here, we present an integrated computational and experimental approach for the development and optimization of mechanistic kinetic models for microbial growth and metabolic and enzymatic dynamics. Our approach integrates growth dynamics, gene expression, protein secretion, and gene-deletion phenotypes. We applied this methodology to build a dynamic model of the growth kinetics in batch culture of the bacterium Cellvibrio japonicus grown using either cellobiose or glucose media. The model parameters were inferred from an experimental data set using an evolutionary computation method. The resulting model was able to explain the growth dynamics of C. japonicus using either cellobiose or glucose media and was also able to accurately predict the metabolite concentrations in the wild-type strain as well as in β-glucosidase gene deletion mutant strains. We validated the model by correctly predicting the non-diauxic growth and metabolite consumptions of the wild-type strain in a mixed medium containing both cellobiose and glucose, made further predictions of mutant strains growth phenotypes when using cellobiose and glucose media, and demonstrated the utility of the model for designing industrially-useful strains. Importantly, the model is able to explain the role of the different β-glucosidases and their behavior under genetic perturbations. Here, this integrated approach can be extended to other metabolic pathways to produce mechanistic models for the comprehensive understanding of enzymatic functions in multiple substrates.

59 BASIC BIOLOGICAL SCIENCES↗

Autonomous Evolution of Dynamic Gaits with Two Quadruped Robots

A challenging task that must be accomplished for every legged robot is creating the walking and running behaviors needed for it to move. In this paper we describe our system for autonomously evolving dynamic gaits on two of Sony's quadruped robots. Our evolutionary algorithm runs on board the robot and uses the robot's sensors to compute the quality of a gait without assistance from the experimenter. First we show the evolution of a pace and trot gait on the OPEN-R prototype robot. With the fastest gait, the robot moves at over 10/min/min., which is more than forty body-lengths/min. While these first gaits are somewhat sensitive to the robot and environment in which they are evolved, we then show the evolution of robust dynamic gaits, one of which is used on the ERS-110, the first consumer version of AIBO.

Hornby, Gregory S.↗

Computational fluid dynamics: Transition to design applications

The development of aerospace vehicles, over the years, was an evolutionary process in which engineering progress in the aerospace community was based, generally, on prior experience and data bases obtained through wind tunnel and flight testing. Advances in the fundamental understanding of flow physics, wind tunnel and flight test capability, and mathematical insights into the governing flow equations were translated into improved air vehicle design. The modern day field of Computational Fluid Dynamics (CFD) is a continuation of the growth in analytical capability and the digital mathematics needed to solve the more rigorous form of the flow equations. Some of the technical and managerial challenges that result from rapidly developing CFD capabilites, some of the steps being taken by the Fort Worth Division of General Dynamics to meet these challenges, and some of the specific areas of application for high performance air vehicles are presented.

Bradley, R. G.↗

Physical studies of the planetary rings

In this review paper, the physical properties of the Saturnian and Uranian rings as derived from ground-based observations are first discussed. Focus is then shifted to the study of the orbital dynamics of the ring particles. Numerical simulations of the evolutionary history of a system of colliding particles in differential rotation together with theoretical modeling of the inelastic collision processes are surveyed. In anticipation of the information returned from in situ measurements by space probes, interactions of the planetary rings with the interplanetary meteoroids and planetary magnetospheres are briefly considered. Finally, models of planetary ring origin are examined. In this connection, some recent work on the satellite resonant perturbation effects on the ring structure are also touched upon.

Ip, W.-H.↗

Periodic orbits of the general three-body problem for the sun-Jupiter-Saturn system

Two families of symmetric periodic orbits of the planar, general, three-body problem are presented. The masses of the three bodies include ratios equal to the sun-Jupiter-Saturn system and the periods of the orbits of Jupiter and Saturn are in a 2:5 resonance. The (linear) stability of the orbits are studied in relation to eccentricity and mass variations. The generation of the two families of periodic orbits follows a systematic approach and employs (numerical) continuation from periodic orbits of the first and second kind in the circular restricted problem to the elliptic restricted problem and from the circular and elliptic problems to the general problem through bifurcation phenomena relating the three dynamical systems. The approach also provides insight into the evolutionary process of periodic orbits continued from the restricted problems to the general problem.

Kwok, J. H.↗

Power Systems for Future Missions: Appendices A-L

Selection of power system technology for space applications is typically based on mass, readiness of a particular technology to meet specific mission requirements, and life cycle costs (LCC). The LCC is typically used as a discriminator between competing technologies for a single mission application. All other future applications for a given technology are usually ignored. As a result, development cost of a technology becomes a dominant factor in the LCC comparison. Therefore, it is common for technologies such as DIPS and LMR-CBC to be potentially applicable to a wide range of missions and still lose out in the initial LCC comparison due to high development costs. This collection of appendices (A through L) contains the following power systems technology plans: CBC DIPS Technology Roadmap; PEM PFC Technology Roadmap; NAS Battery Technology Roadmap; PV/RFC Power System Technology Roadmap; PV/NAS Battery Technology Roadmap; Thermionic Reactor Power System Technology Roadmap; SP-100 Power System Technology Roadmap; Dynamic SP-100 Power System Technology Roadmap; Near-Term Solar Dynamic Power System Technology Roadmap; Advanced Solar Dynamic Power System Technology Roadmap; Advanced Stirling Cycle Dynamic Isotope Power System Technology Roadmap; and the ESPPRS (Evolutionary Space Power and Propulsion Requirements System) User's Guide.

Gill, S. P.↗

Filovirus Research: The Need for an Integrated Approach in Time and Space

The episodic appearance of Ebola virus (EBOV) and Marburg virus (MARV) across central Africa over the last 15 years not only underscores the importance of filoviruses as uniquely virulent agents to both human and wildlife communities but also implies a very complex transmission scenario that must be understood if we are to prevent or mitigate filovirus outbreaks in the future. Efforts of a global network of scientists and healthcare workers have expanded our knowledge of filoviruses to meet the growing threat of Ebola and Marburg hemorrhagic fevers in Africa. In recent decades, several newly emerging diseases have resulted in major threats to both affected communities and global public health. Viruses from wildlife hosts in particular, have exhibited a capability for cross-species transmission (CST), and have caused high-impact diseases in humans Such as Ebola and Marburg hemorrhagic fevers, Nipah and severe acute respiratory syndrome (SAILS). It has been estimated that about 60.3% (Jones et al. 2008) of human infectious diseases are of animal origin (zoonoses) and even some important viral diseases that are traditionally considered of human origin, for example measles and smallpox, may very well have their prehistoric origins in wildlife (Wolfe et al 2007). It maybe logical and prudent therefore, to anticipate that there are other, new filoviruses out there that will cross into humans at some point in time. If we anticipate that these will happen and wish to be prepared for and mitigate this potential, then an understanding of filoviruses as a biologic system in the environment will be essential to that process. We will need to know how the ecological dynamic of CST interacts with a 'new' viruse's evolutionary factors to overcome environmental, demographic and host-specific barriers to transmission and infectivity to humans.

Pinzon, Jorge E.↗

Limits on the Evolutionary Rates of Biological Traits

This paper focuses on the maximum speed at which biological evolution can occur. I derive inequalities that limit the rate of evolutionary processes driven by natural selection, mutations, or genetic drift. These rate limits link the variability in a population to evolutionary rates. In particular, high variances in the fitness of a population and of a quantitative trait allow for fast changes in the trait’s average. In contrast, low variability makes a trait less susceptible to random changes due to genetic drift. The results in this article generalize Fisher’s fundamental theorem of natural selection to dynamics that allow for mutations and genetic drift, via trade-of relations that constrain the evolutionary rates of arbitrary traits. The rate limits can be used to probe questions in various evolutionary biology and ecology settings. They apply, for instance, to trait dynamics within or across species or to the evolution of bacteria strains. They apply to any quantitative trait, e.g., from species’ weights to the lengths of DNA strands.

59 BASIC BIOLOGICAL SCIENCES↗