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At least 127 records · Page 7

Mathematical solutions in internal dose assessment: A comparison of Python-based differential equation solvers in biokinetic modeling

Abstract In biokinetic modeling systems employed for radiation protection, biological retention and excretion have been modeled as a series of discretized compartments representing the organs and tissues of the human body. Fractional retention and excretion in these organ and tissue systems have been mathematically governed by a series of coupled first-order ordinary differential equations (ODEs). The coupled ODE systems comprising the biokinetic models are usually stiff due to the severe difference between rapid and slow transfers between compartments. In this study, the capabilities of solving a complex coupled system of ODEs for biokinetic modeling were evaluated by comparing different Python programming language solvers and solving methods with the motivation of establishing a framework that enables multi-level analysis. The stability of the solvers was analyzed to select the best performers for solving the biokinetic problems. A Python-based linear algebraic method was also explored to examine how the numerical methods deviated from an analytical or semi-analytical method. Results demonstrated that customized implicit methods resulted in an enhanced stable solution for the inhaled 60 Co (Type M) and 131 I (Type F) exposure scenarios for the inhalation pathway of the International Commission on Radiological Protection (ICRP) Publication 130 Human Respiratory Tract Model (HRTM). The customized implementation of the Python-based implicit solvers resulted in approximately consistent solutions with the Python-based matrix exponential method ( expm ). The differences generally observed between the implicit solvers and expm are attributable to numerical precision and the order of numerical approximation of the numerical solvers. This study provides the first analysis of a list of Python ODE solvers and methods by comparing their usage for solving biokinetic models using the ICRP Publication 130 HRTM and provides a framework for the selection of the most appropriate ODE solvers and methods in Python language to implement for modeling the distribution of internal radioactivity.

61 RADIATION PROTECTION AND DOSIMETRY↗

A fully implicit, asymptotic-preserving, semi-Lagrangian algorithm for the time dependent anisotropic heat transport equation

In this paper, we extend the operator-split asymptotic-preserving, semi-Lagrangian algorithm for time dependent anisotropic heat transport equation proposed in Chacón et al. (2014) [18] to use a fully implicit time integration with backward differentiation formulas. The proposed implicit method can deal with arbitrary heat-transport anisotropy ratios $\mathcal{X}$∥ /$ \mathcal{X}$⟂ $\ggg$ 1 (with $\mathcal{X}$∥, $ \mathcal{X}$⟂ the parallel and perpendicular heat diffusivities, respectively) in complicated magnetic field topologies in an accurate and efficient manner. Further, the implicit algorithm is second-order accurate temporally and demonstrates an accurate treatment at boundary layers (e.g., island separatrices), which was not ensured by the operator-split implementation. The condition number of the resulting algebraic system is independent of the anisotropy ratio, and is inverted with preconditioned GMRES. We propose a simple preconditioner that renders the finite-dimensional linear operator compact, resulting in mesh-independent convergence rates for topologically simple magnetic fields, and convergence rates scaling as ~ (NΔt) 1/4 (with N the total mesh size and Δt the timestep) in topologically complex magnetic-field configurations. We demonstrate the accuracy and performance of the approach with test problems of varying complexity, including an analytically tractable boundary-layer problem in a straight magnetic field, and a topologically complex magnetic field featuring magnetic islands with extreme anisotropy ratios $\mathcal{X}$∥ /$ \mathcal{X}$⟂ = 10 10 ) .

97 MATHEMATICS AND COMPUTING↗

Symbol alphabets from plabic graphs

Symbol alphabets of n-particle amplitudes in N = 4 super-Yang-Mills theory are known to contain certain cluster variables of Gr(4, n) as well as certain algebraic functions of cluster variables. In this paper we suggest an algorithm for computing these symbol alphabets from plabic graphs by solving matrix equations of the form C ∙ Z = 0 to associate functions on Gr(m, n) to parameterizations of certain cells of Gr(k, n) indexed by plabic graphs. For m = 4 and n = 8 we show that this association precisely reproduces the 18 algebraic symbol letters of the two-loop NMHV eight-particle amplitude from four plabic graphs.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Constraints on sequential discontinuities from the geometry of on-shell spaces

We present several classes of constraints on the discontinuities of Feynman integrals that go beyond the Steinmann relations. These constraints follow from a geometric formulation of the Landau equations that was advocated by Pham, in which the singularities of Feynman integrals correspond to critical points of maps between on-shell spaces. To establish our results, we review elements of Picard-Lefschetz theory, which connect the homotopy properties of the space of complexified external momenta to the homology of the combined space of on-shell internal and external momenta. An important concept that emerges from this analysis is the question of whether or not a pair of Landau singularities is compatible — namely, whether or not the Landau equations for the two singularities can be satisfied simultaneously. Under conditions we describe, sequential discontinuities with respect to non-compatible Landau singularities must vanish. Although we only rigorously prove results for Feynman integrals with generic masses in this paper, we expect the geometric and algebraic insights that we gain will also assist in the analysis of more general Feynman integrals.

97 MATHEMATICS AND COMPUTING↗

Enhancing photoionization rate calculations in low-temperature plasmas using spectral methods

Photoionization plays a central role in the development of streamer discharges and other non-equilibrium plasma phenomena. It creates seed electrons, which are essential for positive streamer propagation, allowing the ionization front to move forward. Because of this, accurate modeling of photoionization is very important for predicting streamer behavior and plasma evolution. The photoionization process in air (N 2 – O 2 mixture) is often described by the Zheleznyak model (1982). This model is usually solved through Helmholtz-type equations that approximate the Zheleznyak photoionization model (Zheleznyak et al. 1982) as Partial Differential Equations (PDEs). Conventional numerical methods, such as the Finite Difference Method (FDM) or Finite Volume Method (FVM), are widely used to solve these equations. Although they are prevalent, the computational cost of these methods due to their need for matrix operations and iterative solver is demanding. To address this challenge, this work develops a spectral solver based on the Fast Fourier Transform (FFT) combined with Discrete Cosine Transform (DCT) and Discrete Sine Transform (DST) to calculate the photoionization rate efficiently in an axisymmetric cylindrical domain. This method naturally satisfies the boundary conditions used in the model and converts the PDE into algebraic ones in spectral space. Thus, avoids the need for iterative matrix solvers. When compared with FDM results, it is demonstrated that the new solver not only maintains accuracy, but also reduces the computational cost, showing a performance increase of approximately 100 compared to FDM over a wide range of problem sizes. The method is parallelized using Message Passing Interface (MPI) and has been integrated into a fluid plasma model for streamer simulation. Here, this FFT-based approach provides a fast and reliable alternative for calculating photoionization in fluid models, helping large-scale plasma simulations run faster and efficiently, and allows higher-resolution simulation without extra computational cost.

Axisymmetric system↗

The soaring kite: a tale of two punctured tori

We consider the 5-mass kite family of self-energy Feynman integrals and present a systematic approach for constructing an ε-form basis, along with its differential equation pulled back onto the moduli space of two tori. Each torus is associated with one of the two distinct elliptic curves this family depends on. We demonstrate how the locations of relevant punctures, which are required to parametrize the full image of the kinematic space onto this moduli space, can be extracted from integrals over maximal cuts. A boundary value is provided such that the differential equation is systematically solved in terms of iterated integrals over g-kernels and modular forms. Then, the numerical evaluation of the master integrals is discussed, and important challenges in that regard are emphasized. In an appendix, we introduce new relations between g-kernels.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Causal diamonds, cluster polytopes and scattering amplitudes

The “amplituhedron” for tree-level scattering amplitudes in the bi-adjoint φ 3 theory is given by the ABHY associahedron in kinematic space, which has been generalized to give a realization for all finite-type cluster algebra polytopes, labelled by Dynkin diagrams. In this letter we identify a simple physical origin for these polytopes, associated with an interesting (1 + 1)-dimensional causal structure in kinematic space, along with solutions to the wave equation in this kinematic “spacetime” with a natural positivity property. The notion of time evolution in this kinematic spacetime can be abstracted away to a certain “walk”, associated with any acyclic quiver, remarkably yielding a finite cluster polytope for the case of Dynkin quivers. The A n–3 , B n–1 /C n–1 and D n polytopes are the amplituhedra for n-point tree amplitudes, one-loop tadpole diagrams, and full integrand of one-loop amplitudes. We also introduce a polytope D¯ n , which chops the D n polytope in half along a symmetry plane, capturing one-loop amplitudes in a more efficient way.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Integral boundary conditions in phase field models

Modeling the chemical, electric and thermal transport as well as phase transitions and the accompanying mesoscale microstructure evolution within a material in an electronic device setting involves the solution of partial differential equations often with integral boundary conditions. Employing the familiar Poisson equation describing the electric potential evolution in a material exhibiting insulator to metal transitions, we exploit a special property of such an integral boundary condition, and we properly formulate the variational problem and establish its well-posedness. Next, we compare our method with the commonly-used Lagrange multiplier method that can also handle such boundary conditions. Numerical experiments demonstrate that our new method achieves optimal convergence rate in contrast to the conventional Lagrange multiplier method. Furthermore, the linear system derived from our method is symmetric positive definite, and can be efficiently solved by Conjugate Gradient method with algebraic multigrid preconditioning.

97 MATHEMATICS AND COMPUTING↗

Binary operations on neuromorphic hardware with application to linear algebraic operations and stochastic equations

Abstract Non-von Neumann computational hardware, based on neuron-inspired, non-linear elements connected via linear, weighted synapses—so-called neuromorphic systems—is a viable computational substrate. Since neuromorphic systems have been shown to use less power than CPUs for many applications, they are of potential use in autonomous systems such as robots, drones, and satellites, for which power resources are at a premium. The power used by neuromorphic systems is approximately proportional to the number of spiking events produced by neurons on-chip. However, typical information encoding on these chips is in the form of firing rates that unarily encode information. That is, the number of spikes generated by a neuron is meant to be proportional to an encoded value used in a computation or algorithm. Unary encoding is less efficient (produces more spikes) than binary encoding. For this reason, here we present neuromorphic computational mechanisms for implementing binary two’s complement operations. We use the mechanisms to construct a neuromorphic, binary matrix multiplication algorithm that may be used as a primitive for linear differential equation integration, deep networks, and other standard calculations. We also construct a random walk circuit and apply it in Brownian motion simulations. We study how both algorithms scale in circuit size and iteration time.

97 MATHEMATICS AND COMPUTING↗

Kinematic flow for cosmological loop integrands

Recently, an interesting pattern was found in the differential equations satisfied by the Feynman integrals describing tree-level correlators of conformally coupled scalars in a power-law FRW cosmology [1, 2]. It was proven that simple and universal graphical rules predict the equations for arbitrary graphs as a flow in kinematic space. In this note, we show that the same rules — with one small addition — also determine the differential equations for loop integrands. We explain that both the basis of master integrals and the singularities of the differential equations can be represented by tubings of marked graphs. An important novelty in the case of loops is that some basis functions can vanish, and we present a graphical rule to identify these vanishing functions. Taking this into account, we then demonstrate that the kinematic flow correctly predicts the differential equations for all loop integrands.

Cosmological models↗

The five-point bootstrap

We study five-point correlation functions of scalar operators in d-dimensional conformal field theories. We develop a new approach to computing the five-point conformal blocks for exchanged primary operators of arbitrary spin by introducing a generalization of radial coordinates, using an appropriate ansatz, and perturbatively solving two quadratic Casimir differential equations. We then study five-point correlators 〈σσϵσσ〉 in the critical 3d Ising model. We truncate the operator product expansions (OPEs) in the correlator by including a finite number of primary operators with conformal dimension below a cutoff ∆ ⩽ ∆ cutoff . We then compute several OPE coefficients involving ϵ and two spinning operators by demanding that the truncated correlator approximately satisfies the crossing relation.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

cymyc: $\underline{C}$alabi-$\underline{Y}$au $\underline{M}$etrics, $\underline{Y}$ukawas, and $\underline{C}$urvature

We introduce cymyc, a high-performance Python library for numerical investigation of the geometry of a large class of string compactification manifolds and their associated moduli spaces. We develop a well-defined geometric ansatz to numerically model tensor fields of arbitrary degree on a large class of Calabi-Yau manifolds. cymyc includes a machine learning component which incorporates this ansatz to model tensor fields of interest on these spaces by finding an approximate solution to the system of partial differential equations they should satisfy.

differential and algebraic geometry↗

Near-wall model for compressible turbulent boundary layers based on an inverse velocity transformation

In this work, a near-wall model, which couples the inverse of a recently developed compressible velocity transformation (Griffin et al., Proc. Natl Acad. Sci., vol. 118, 2021, p. 34) and an algebraic temperature–velocity relation, is developed for high-speed turbulent boundary layers. As input, the model requires the mean flow state at one wall-normal height in the inner layer of the boundary layer and at the boundary-layer edge. As output, the model can predict mean temperature and velocity profiles across the entire inner layer, as well as the wall shear stress and heat flux. The model is tested in an a priori sense using a wide database of direct numerical simulation high-Mach-number turbulent channel flows, pipe flows and boundary layers (48 cases, with edge Mach numbers in the range 0.77–11, and semi-local friction Reynolds numbers in the range 170–5700). The present model is significantly more accurate than the classical ordinary differential equation (ODE) model for all cases tested. The model is deployed as a wall model for large-eddy simulations in channel flows with bulk Mach numbers in the range 0.7–4 and friction Reynolds numbers in the range 320–1800. When compared to the classical framework, in the a posteriori sense, the present method greatly improves the predicted heat flux, wall stress, and temperature and velocity profiles, especially in cases with strong heat transfer. In addition, the present model solves one ODE instead of two, and has a computational cost and implementation complexity similar to that of the commonly used ODE model.

42 ENGINEERING↗

Hyperbolic three-string vertex

We begin developing tools to compute off-shell string amplitudes with the recently proposed hyperbolic string vertices of Costello and Zwiebach. Exploiting the relation between a boundary value problem for Liouville’s equation and a monodromy problem for a Fuchsian equation, we construct the local coordinates around the punctures for the generalized hyperbolic three-string vertex and investigate their various limits. This vertex corresponds to the general pants diagram with three boundary geodesics of unequal lengths. We derive the conservation laws associated with such vertex and perform sample computations. We note the relevance of our construction to the calculations of the higher-order string vertices using the pants decomposition of hyperbolic Riemann surfaces.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Learning physics-based reduced-order models from data using nonlinear manifolds

Here we present a novel method for learning reduced-order models of dynamical systems using nonlinear manifolds. First, we learn the manifold by identifying nonlinear structure in the data through a general representation learning problem. The proposed approach is driven by embeddings of low-order polynomial form. A projection onto the nonlinear manifold reveals the algebraic structure of the reduced-space system that governs the problem of interest. The matrix operators of the reduced-order model are then inferred from the data using operator inference. Numerical experiments on a number of nonlinear problems demonstrate the generalizability of the methodology and the increase in accuracy that can be obtained over reduced-order modeling methods that employ a linear subspace approximation.

97 MATHEMATICS AND COMPUTING↗

Stringy canonical forms

Canonical forms of positive geometries play an important role in revealing hidden structures of scattering amplitudes, from amplituhedra to associahedra. In this paper, we introduce “stringy canonical forms”, which provide a natural definition and extension of canonical forms for general polytopes, deformed by a parameter α'. They are defined by real or complex integrals regulated with polynomials with exponents, and are meromorphic functions of the exponents, sharing various properties of string amplitudes. As α'→ 0, they reduce to the usual canonical form of a polytope given by the Minkowski sum of the Newton polytopes of the regulating polynomials, or equivalently the volume of the dual of this polytope, naturally determined by tropical functions. At finite α', they have simple poles corresponding to the facets of the polytope, with the residue on the pole given by the stringy canonical form of the facet. There is the remarkable connection between the α'→ 0 limit of tree-level string amplitudes, and scattering equations that appear when studying the α'→ ∞ limit. We show that there is a simple conceptual understanding of this phenomenon for any stringy canonical form: the saddle-point equations provide a diffeomorphism from the integration domain to the interior of the polytope, and thus the canonical form can be obtained as a pushforward via summing over saddle points. When the stringy canonical form is applied to the ABHY associahedron in kinematic space, it produces the usual Koba-Nielsen string integral, giving a direct path from particle to string amplitudes without an a priori reference to the string worldsheet. We also discuss a number of other examples, including stringy canonical forms for finite-type cluster algebras (with type A corresponding to usual string amplitudes), and other natural integrals over the positive Grassmannian.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Renormalizing two-fermion operators in the SMEFT via supergeometry

We extend the geometric framework of field-space covariance for loop computations, thereby unifying the treatment of scalars, fermions, and gauge bosons in effective field theories. This allows us to derive a manifestly covariant formula for one-loop UV divergences that includes contributions from mixed boson-fermion graphs. The result is expressed in terms of geometric invariants of the field-space supermanifold. As a demonstration of this formula, we compute the renormalization group equations for two-fermion operators at the dimension-eight level in the Standard Model Effective Field Theory.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Cluster bootstrap for cosmological correlators

We show that cosmological wavefunction coefficients associated with n-site chain and loop graphs for a cubic scalar theory in de Sitter spacetime have symbol alphabets given by subsets of A 2n−2 and B 2n−1 cluster variables, respectively, and satisfy the associated cluster adjacency properties. The key step in proving this is identifying a precise connection between graph “tubings” that appear in the kinematic flow equation and polygon “triangulations” that encode the combinatorics of cluster compatibility. Our results imply that cosmological wavefunction coefficients in a general power-law FRW cosmology satisfy cluster adjacency to all orders in the ϵ expansion around the de Sitter limit. We use this information as bootstrap input to show that de Sitter symbols for n ≤ 4 are uniquely determined by simple physical constraints.

differential and algebraic geometry↗