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At least 127 records · Page 7

Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action

The severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) replication transcription complex (RTC) is a multi-domain protein responsible for replicating and transcribing the viral mRNA inside a human cell. Attacking RTC function with pharmaceutical compounds is a pathway to treating COVID-19. Conventional tools, e.g., cryo-electron microscopy and all-atom molecular dynamics (AAMD), do not provide sufficiently high resolution or timescale to capture important dynamics of this molecular machine. Consequently, we develop an innovative workflow that bridges the gap between these resolutions, using mesoscale fluctuating finite element analysis (FFEA) continuum simulations and a hierarchy of AI-methods that continually learn and infer features for maintaining consistency between AAMD and FFEA simulations. We leverage a multi-site distributed workflow manager to orchestrate AI, FFEA, and AAMD jobs, providing optimal resource utilization across HPC centers. Our study provides unprecedented access to study the SARS-CoV-2 RTC machinery, while providing general capability for AI-enabled multi-resolution simulations at scale.

Trifan, Anda↗

The Relation of Finite Element and Finite Difference Methods

Finite element and finite difference methods are examined in order to bring out their relationship. It is shown that both methods use two types of discrete representations of continuous functions. They differ in that finite difference methods emphasize the discretization of independent variable, while finite element methods emphasize the discretization of dependent variable (referred to as functional approximations). An important point is that finite element methods use global piecewise functional approximations, while finite difference methods normally use local functional approximations. A general conclusion is that finite element methods are best designed to handle complex boundaries, while finite difference methods are superior for complex equations. It is also shown that finite volume difference methods possess many of the advantages attributed to finite element methods.

Vinokur, M.↗

Experimental and finite element investigation of the buckling characteristics of a beaded skin panel for a hypersonic aircraft

As part of NASA's continuing research into hypersonics and 85 square foot hypersonic wing test section of a proposed hypersonic research airplane was laboratory tested. The project reported on in this paper has carried the hypersonic wing test structure project one step further by testing a single beaded panel to failure. The primary interest was focused upon the buckling characteristics of the panel under pure compression with boundary conditions similar to those found in a wing mounted condition. Three primary phases of analysis are included in the report. These phases include: experimental testing of the beaded panel to failure; finite element structural analysis of the beaded panel with the computer program NASTRAN; a summary of the semiclassical buckling equations for the beaded panel under purely compressive loads. Comparisons between each of the analysis methods are also included.

Siegel, W. H.↗

Matrix Microcracking Effect on the Structural Response of a Thermal Protection System

The effect of microcracking in the phenolic matrix of a three-dimensional woven thermal protection system (TPS) and resulting material stiffness reduction was studied via a comparison of finite element results from linear and iterative linear analyses. A dual-layer continuous dry weave material with a low-density phenolic resin matrix has been developed for use in extreme environments. Due to high stresses in the through-the-thickness direction, microcracks may form in the matrix. The matrix does not have structural load transfer requirements, and testing has shown that microcracked phenolic resin satisfies thermal requirements. Microcracks in the matrix would result in a reduction of stiffness, which could alter the structural performance. A study was conducted to determine if reduction in material stiffness would change the load paths or structural margins. A linear finite element analysis that did not account for microcracking and an iterative linear finite element analysis that accounted for propagation microcracks were compared. Four subcases were analyzed with results indicating that the assumed propagation strength for the microcracking is the critical parameter for determining the extent of microcracking. Phenolic microcracking does not appear to have an adverse effect on the structural response and is not a critical failure for the modeled TPS.

Thermal Protection System↗

Continuation in a parameter - Experience with viscous and free surface flows

The results of modifications in continuation methods applied to obtain solutions to the Navier-Stokes systems of equations for incompressible, two-dimensional, steady flows are reported. It is shown that parameter continuation permits prediction of accurate, initial estimates for iterative processing of nonlinear finite difference and finite element equations of motions. The new parameter steps are derived from values of the preceding parameter steps. The accuracy of the estimates is ensured with appropriate choices of the step size. The continuation predictor/iterative corrector is demonstrated to trace the branches of parameter space along which steady flow states are found, and techniques are available for tracing multiply branching paths. The techniques are applied to solving the Navier-Stokes equations for flow through a rotating square channel, the formation of a falling liquid curtain, and gyrostatic equilibria of rotating cylindrical drops.

Kheshgi, H. S.↗

FEA-aided investigation of the effective thermal conductivity in a medium with embedded spheres

For multiple applications in nuclear energy, the ability to accurately represent material behavior with a simplified model is important to facilitate practical engineering-scale simulations. Here, we focus on the homogenized thermal response of a medium containing spherical inclusions, similar to a fuel form (compact or pebble) containing (TRISO) particles. A review on effective thermal conductivity (ETC) modeling is performed considering a random distribution of mono-sized spherical inclusions in a continuous matrix, with a primary focus on the analytical models. Finite element simulations are performed to evaluate each analytical model in varying material conditions. The model predictions are compared with the expected results obtained from the finite element predictions in addition to the Wiener and Hashin-Shtrikman bounds. Lastly, we included a practical discussion on the homogenization applied to a TRISO fuel pebble.

42 ENGINEERING↗

Orbit-averaging and deposition accuracy for runaway electron beams in hybrid kinetic-MHD simulations of the runaway plateau

We develop a new procedure that combines the kinetic orbit runaway electron code (KORC) and the NIMROD extended-magnetohydrodynamic code to simulate runaway electrons (REs) in the post-disruption plateau. KORC integrates guiding-center orbits, with a barycentric-based binary search strategy providing initial guesses for the Newton–Raphson logical-to-physical coordinate inversion, ensuring reliable particle-to-mesh mapping in NIMROD, whose fields remain static for the present study. Samples are drawn in accord with experimental parallel current profiles of RE beams during the plateau phase. Deposition in NIMROD is verified through comparison with a Python-based finite-element code that ensures periodicity in the poloidal direction and continuity at the magnetic axis. Accurate representation of near-axis fields requires finer mesh resolution to prevent under- and overshoots in current density from orbit inaccuracies. Yet, at a fixed particle count, increasing mesh resolution amplifies statistical noise in the deposited fields. An orbit-averaging method accumulates partial current deposits over multiple kinetic steps and reduces the statistical noise with little added computational cost. By coupling kinetic routines from KORC directly into the NIMROD codebase, these developments lay essential groundwork for future self-consistent KORC–NIMROD coupling.

Algorithms and data structure↗

Systematic generation of nonlinear discretized dynamic equilibrium equations of spinning cantilevers

General nonlinear discretized governing equations of motion of spinning elastic solids and structures are adjusted for the case of a spinning cantilever with initial geometric imperfections. Consideration is given to second degree nonlinearities in the strain-displacement and velocity-displacement relationships. Parameters of the discretization are developed to include the type and number of the coordinate functions used in the admissible trial solution in order to unify the discretization approaches associated with stationarity principles. The coordinate functions comprise both sets of continuous and piecewise continuous functions employed in the Rayleigh-Ritz and the finite element methods, respectively. Coefficient matrices are provided which contain the energy density expressions and which are adaptable to computer programming.

El-Essawi, M.↗

Finite element methods for nonlinear elastostatic problems in rubber elasticity

A number of finite element methods for the analysis of nonlinear problems in rubber elasticity are outlined. Several different finite element schemes are discussed. These include the augmented Lagrangian method, continuation or incremental loading methods, and associated Riks-type methods which have the capability of incorporating limit point behavior and bifurcations. Algorithms for the analysis of limit point behavior and bifurcations are described and the results of several numerical experiments are presented. In addition, a brief survey of some recent work on modelling contact and friction in elasticity problems is given. These results pertain to the use of new nonlocal and nonlinear friction laws.

Oden, J. T.↗

Computation of consistent boundary quantities in finite element thermal-fluid solutions

The consistent boundary quantity method for computing derived quantities from finite element nodal variable solutions is investigated. The method calculates consistent, continuous boundary surface quantities such as heat fluxes, flow velocities, and surface tractions from nodal variables such as temperatures, velocity potentials, and displacements. Consistent and lumped coefficient matrix solutions for such problems are compared. The consistent approach may produce more accurate boundary quantities, but spurious oscillations may be produced in the vicinity of discontinuities. The uncoupled computations of the lumped approach provide greater flexibility in dealing with discontinuities and provide increased computational efficiency. The consistent boundary quantity approach can be applied to solution boundaries other than those with Dirichlet boundary conditions, and provides more accurate results than the customary method of differentiation of interpolation polynomials.

Thornton, E. A.↗

The effects of epoxy shrinkage on the Advanced X-ray Astrophysics Facility Technology Mirror Assembly

A method is shown analytically which reduces the effects of epoxy shrinkage for an ultra-high precision X-ray telescope to within the system error budget. The three-dimensional shrinkage effects are discussed with reference to this telescope. The results of the analysis point to the use of an interrupted rather than continuous bond line as the best solution. Discussion of the finite element modelling techniques is included.

Cohen, L. M.↗

Fiber Composite Sandwich Thermostructural Behavior: Computational Simulation

Several computational levels of progressive sophistication/simplification are described to computationally simulate composite sandwich hygral, thermal, and structural behavior. The computational levels of sophistication include: (1) three-dimensional detailed finite element modeling of the honeycomb, the adhesive and the composite faces; (2) three-dimensional finite element modeling of the honeycomb assumed to be an equivalent continuous, homogeneous medium, the adhesive and the composite faces; (3) laminate theory simulation where the honeycomb (metal or composite) is assumed to consist of plies with equivalent properties; and (4) derivations of approximate, simplified equations for thermal and mechanical properties by simulating the honeycomb as an equivalent homogeneous medium. The approximate equations are combined with composite hygrothermomechanical and laminate theories to provide a simple and effective computational procedure for simulating the thermomechanical/thermostructural behavior of fiber composite sandwich structures.

Chamis, C. C.↗

Modeling ice streams: Derived quantities

The model addressed is a finite-element, map-plane, time-dependent, column-averaged continuity equation solver. The key to the fitting process involves the balance between ice motion dominated by flow in internal layers, and ice motion dominated by sliding at the bed. The fitting process involves an iterative process carried out in the time domain. Beginning with the portion of the ice sheet being modeled identical to the present ice sheet with uniform flow, sliding, and fraction specified at nominal values, the model monitors each nodal point surface elevation. As the calculated surface elevation deviates from the present surface, a correction proportional to the difference is applied to selected parameter sets. This correction is in a sense that would tend to improve the fit at the particular nodal point. A calculated surface elevation that was higher than the present surface would result in an increased fraction, which would tend to lower the calculated surface (if the flow or sliding constant were being used as the fitting parameter, they would be lowered to improve the fit). This process is allowed to proceed as long as is necessary for the situation to stabilize. Typically, this takes tens of thousands of model years, but the rate is dependent on other external forcings such as the accumulation rate. The primary result is that while a typical sample of ice streams from around Antarctica can be fitted quite reasonably using only the fraction of the velocity due to sliding, a different mechanism seems to be in play along the Siple Coast, where reduced sliding constants are required to attain a reasonable fit. Flow is more strongly channelized in this region, and velocities are, in general, higher than are observed in other regions. It is unlikely that the mechanism that controls the ice movement along the Siple Coast is exactly similar to the mechanisms in the other ice streams. The concept of deformable sediments and their contribution to the fast flow along the Siple Coast may have limited applicability to other Antarctic ice streams.

Fastook, James↗

A Posteriori Bounds for Linear-Functional Outputs of Crouzeix-Raviart Finite Element Discretizations of the Incompressible Stokes Problem

We present a finite element technique for the efficient generation of lower and upper bounds to outputs which are linear functionals of the solutions to the incompressible Stokes equations in two space dimensions; the finite element discretization is effected by Crouzeix-Raviart elements, the discontinuous pressure approximation of which is central to our approach. The bounds are based upon the construction of an augmented Lagrangian: the objective is a quadratic "energy" reformulation of the desired output; the constraints are the finite element equilibrium equations (including the incompressibility constraint), and the intersubdomain continuity conditions on velocity. Appeal to the dual max-min problem for appropriately chosen candidate Lagrange multipliers then yields inexpensive bounds for the output associated with a fine-mesh discretization; the Lagrange multipliers are generated by exploiting an associated coarse-mesh approximation. In addition to the requisite coarse-mesh calculations, the bound technique requires solution only of local subdomain Stokes problems on the fine-mesh. The method is illustrated for the Stokes equations, in which the outputs of interest are the flowrate past, and the lift force on, a body immersed in a channel.

Patera, Anthony T.↗

Assessment of Buffer-IPyC Thermomechanical Debonding Behavior Using New Experiment Strength Data in BISON

TRIstructural ISOtropic (TRISO) single sub-millimeter-diameter nuclear fuel particle consists of a spherical fuel kernel surrounded by four coating layers. During reactor operation, the TRISO coating layers are subjected to irradiation-induced dimensional changes and the associated thermomechanical behavior of each layer. One of the observed behaviors is gap formation between the buffer and IPyC layer due to the porous buffer’s irradiation-induced shrinkage exceeding that of the IPyC layer. To predict TRISO thermomechanical performance, multi-physics models have been built that are continually updated and refined. The BISON code is a finite element-based nuclear fuel performance code that may be used for TRISO particle simulations. One of the recent additions to the BISON code is the ability to model the process of layer debonding. This paper will focus on the simulation results of the improved BISON debonding model that will utilize updated strengths measured from irradiated TRISO fuel particles. The new experimental strength data from micromechanical tests of irradiated TRISO fuel samples were exercised in the BISON simulations and compared to baseline strength data to assess their applicability in the models. This also includes updated buffer-IPyC bond strengths to simulate layer delamination. Based on current experimental observations it is noted that the buffer-IPyC separation occurs not exactly at the junction of these two layers, but more on the side of the buffer layer. This improved modeling approach using experimental strength data to characterize buffer-IPyC debonding and its potential subsequent cracking will be presented in the paper along with comparisons to available experimental observations.

11 - NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Assessment of buffer-IPyC thermomechanical debonding behavior using new experimental strength data in BISON

TRIstructural ISOtropic (TRISO) fuel is a nuclear fuel commonly used in High Temperature Gas-cooled Reactors (HTGRs). A single sub-millimeter-diameter TRISO fuel particle consists of a spherical fuel kernel surrounded by four coating layers: a low-density pyrocarbon buffer layer, an inner pyrolytic carbon (IPyC) layer, a silicon carbide (SiC) layer, and an outer pyrolytic carbon (OPyC) layer. The kernel is commonly made of UO2 or a mixture of uranium carbide and uranium oxide (UCO). During reactor operation, the TRISO coating layers are subjected to irradiation-induced dimensional changes and the associated thermomechanical behavior of each layer. One of the observed behaviors is gap formation between the buffer and IPyC layer due to the porous buffer’s irradiation-induced shrinkage exceeding that of the IPyC layer. Not all irradiated particles will experience buffer-IPyC gap formation. The debonding may be partial, or it may be nearly total. However, from post-irradiation examination of UCO TRISO fuels irradiated as part of the Advanced Gas Reactor (AGR) Fuel Development and Qualification Program, it was concluded that partial buffer-IPyC debonding was the most common type of buffer-IPyC interaction. To predict TRISO thermomechanical performance, multi-physics models have been built that are being continually updated and refined. The BISON code is a finite element-based nuclear fuel performance code that may be used for 1D, 2D, and 3D TRISO particle simulations. This code is used to calculate fuel temperature, kernel swelling, buffer densification, thermal and irradiation creep, fracture, and fission gas production and release. One of the recent additions to the BISON code is the ability to model the process of layer debonding. This paper will focus on the simulation results of the improved BISON debonding model that will utilize updated strengths measured from irradiated AGR TRISO fuel particles. The new experimental strength data from micromechanical tests of irradiated TRISO fuel samples were exercised in the BISON simulations and compared to baseline strength data to assess their applicability in the models. This also includes updated buffer-IPyC bond strengths to simulate layer delamination. Based on current experimental observations it is noted that the buffer-IPyC separation occurs not exactly at the junction of these two layers, but more on the side of the buffer layer. That observation is also implemented in the TRISO interface debonding model. This improved modeling approach using experimental strength data to characterize buffer-IPyC debonding and its potential subsequent cracking will be presented in the paper along with comparisons to available experimental observations.

11 - NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Calibration and Validation of a Finite ELement Model of THor-K Anthropomorphic Test Device for Aerospace Safety Applications

The THOR anthropomorphic test device (ATD) has been developed and continuously improved by the National Highway Traffic Safety Administration to provide automotive manufacturers an advanced tool that can be used to assess the injury risk of vehicle occupants in crash tests. Recently, a series of modifications were completed to improve the biofidelity of THOR ATD [1]. The updated THOR Modification Kit (THOR-K) ATD was employed at Wright-Patterson Air Base in 22 impact tests in three configurations: vertical, lateral, and spinal [2]. Although a computational finite element (FE) model of the THOR had been previously developed [3], updates to the model were needed to incorporate the recent changes in the modification kit. The main goal of this study was to develop and validate a FE model of the THOR-K ATD. The CAD drawings of the THOR-K ATD were reviewed and FE models were developed for the updated parts. For example, the head-skin geometry was found to change significantly, so its model was re-meshed (Fig. 1a). A protocol was developed to calibrate each component identified as key to the kinematic and kinetic response of the THOR-K head/neck ATD FE model (Fig. 1b). The available ATD tests were divided in two groups: a) calibration tests where the unknown material parameters of deformable parts (e.g., head skin, pelvis foam) were optimized to match the data and b) validation tests where the model response was only compared with test data by calculating their score using CORrelation and Analysis (CORA) rating system. Finally, the whole ATD model was validated under horizontal-, vertical-, and lateral-loading conditions against data recorded in the Wright Patterson tests [2]. Overall, the final THOR-K ATD model developed in this study is shown to respond similarly to the ATD in all validation tests. This good performance indicates that the optimization performed during calibration by using the CORA score as objective function is not test specific. Therefore confidence is provided in the ATD model for uses in predicting response in test conditions not performed in this study such those observed in the spacecraft landing. Comparison studies with ATD and human models may also be performed to contribute to future changes in THOR ATD design in an effort to improve its biofidelity, which has been traditionally based on post-mortem human subject testing and designer experience.

Putnam, J. B.↗

Continuous Integration, In-Code Documentation, and Automation for Nuclear Quality Assurance Conformance

The Multiphysics Object Oriented Simulation Environment (MOOSE) is an open-source, finite element framework for solving highly coupled sets of nonlinear equations. The development of the framework and applications occurs concurrently using an agile, continuous-integration software package. Included in the framework is an in-code, extensible documentation system. Using these two tools in union with the repository management tools GitHub and GitLab, a software quality plan was created and followed such that MOOSE and a MOOSE-based application (BISON) have been shown to meet the American Society of Mechanical Engineers’ Nuclear Quality Assurance-1 standard. The approach relies heavily on automation for both testing and documentation. The resulting effort demonstrates that a rigorous software quality plan may be implemented that incurs a minimal impact on day-to-day development of the software, satisfying the stringent guidelines necessary to operate the software in a safety function within a nuclear facility.

97 MATHEMATICS AND COMPUTING↗