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At least 127 records · Page 7

Verification of Unstructured Grid Adaptation Components

Adaptive unstructured grid techniques have made limited impact on production analysis workflows where the control of discretization error is critical to obtaining reliable simulation results. Recent progress has matured a number of independent implementations of flow solvers, error estimation methods, and anisotropic grid adaptation mechanics. Known differences and previously unknown differences in grid adaptation components and their integrated processes are identified here for study. Unstructured grid adaptation tools are verified using analytic functions and the Code Comparison Principle. Three analytic functions with different smoothness properties are adapted to show the impact of smoothness on implementation differences. A scalar advection-diffusion problem with an analytic solution that models a boundary layer is adapted to test individual grid adaptation components. Laminar flow over a delta wing and turbulent flow over an ONERA M6 wing are verified with multiple, independent grid adaptation procedures to show consistent convergence to fine-grid forces and a moment. The scalar problems illustrate known differences in a grid adaptation component implementation and a previously unknown interaction between components. The wing adaptation cases in the current study document a clear improvement to existing grid adaptation procedures. The stage is set for the infusion of verified grid adaptation into production fluid flow simulations.

Park, Michael A.↗

Verification of Unstructured Grid Adaptation Components

Adaptive unstructured grid techniques have made limited impact on production analysis workflows where the control of discretization error is critical to obtaining reliable simulation results. Recent progress has matured a number of independent implementations of flow solvers, error estimation methods, and anisotropic grid adaptation mechanics. Known differences and previously unknown differences in grid adaptation components and their integrated processes are identified here for study. Unstructured grid adaptation tools are verified using analytic functions and the Code Comparison Principle. Three analytic functions with different smoothness properties are adapted to show the impact of smoothness on implementation differences. A scalar advection-diffusion problem with an analytic solution that models a boundary layer is adapted to test individual grid adaptation components. The scalar problems illustrate known differences in a grid adaptation component implementation and a previously unknown interaction between components. Laminar flow over a delta wing is verified with multiple, independent grid adaptation procedures to show consistent convergence to fine-grid forces and pitching moment.

Park, Michael A.↗

Verification of Viscous Goal-Based Anisotropic Mesh Adaptation

Adaptive unstructured mesh techniques have a limited, but growing impact on production analysis workflows where the control of discretization error is critical to obtaining reliable simulation results. Recent progress has matured a number of independent implementations of flow solvers, error estimation methods, and anisotropic mesh adaptation mechanics. Anisotropic metric construction methods are evaluated with analytically defined primal and adjoint fields. This allows the comparison of different metric formulations and different implementations of the same formulation without the complications of a flow and adjoint solution method. Unstructured mesh adaptation tools are verified by comparison on analytic primal and dual field before verification on benchmark aerodynamics cases. The documentation of these verification exercises helps to prepare these goal-based methods for routine use in production simulation workflows.

Mesh adaptation↗

Maximizing Spaceflight Biological Data with Omics Analytics: The NASA GeneLab Database

NASA’s GeneLab includes an open-access repository of some 250+ omics datasets generated by biological experiments relevant to spaceflight including simulated cosmic radiation and microgravity. In order to maximize the intelligibility of these data, particularly for users with limited bioinformatics background, GeneLab has become a knowledgebase platform converting raw genetic and proteomic signatures found in flight samples into biological and physiological meanings. A large community of more than 100 scientists has rallied behind GeneLab and organized into four Analysis Working Groups (AWGs: Animal, Plant, Microbe, and Multi-Omics). Together, the AWGs have gained scientific recognition worldwide by establishing a consortium in charge of adopting new complex standards for data analysis workflows and omics sample processing in a rapidly evolving field. We will demonstrate the usage of the repository with smart search capability, an online controlled-access toolshed "Galaxy" to process user data with vetted standard workflows, a workspace for data sharing and a data submission portal with ontology control for better metadata curation. The GeneLab visualization portal will also be demonstrated, showing how anyone without formal training in bioinformatics can now browse the space biology omics data to discover new biology and potential solutions to improve life in space.

Sylvain Vincent Costes↗

GeneLab: The NASA System Biology Platform for Space Omics Repository, Analysis and Visualization

NASA’s GeneLab includes an open-access repository of some 250+ omics datasets generated by biological experiments relevant to spaceflight including simulated cosmic radiation and microgravity. In order to maximize the intelligibility of these data, particularly for users with limited bioinformatics background, GeneLab has become a knowledgebase platform converting raw genetic and proteomic signatures found in flight samples into biological and physiological meanings. A large community of more than 100 scientists has rallied behind GeneLab and organized into four Analysis Working Groups (AWGs: Animal, Plant, Microbe, and Multi-Omics). Together, the AWGs have gained scientific recognition worldwide by establishing a consortium in charge of adopting new complex standards for data analysis workflows and omics sample processing in a rapidly evolving field. We will demonstrate the usage of the repository with smart search capability, an online controlled-access toolshed "Galaxy" to process user data with vetted standard workflows, a workspace for data sharing and a data submission portal with ontology control for better metadata curation. The GeneLab visualization portal will also be demonstrated, showing how anyone without formal training in bioinformatics can now browse the space biology omics data to discover new biology and potential solutions to improve life in space.

GeneLab↗

Verification of Viscous Goal-Based Anisotropic Mesh Adaptation

Adaptive unstructured mesh techniques have a limited, but growing impact on production analysis workflows where the control of discretization error is critical to obtaining reliable simulation results. Recent progress has matured a number of independent implementations of flow solvers, anisotropic metric construction methods, and anisotropic mesh adaptation mechanics. A key ingredient for the broader acceptance of unstructured mesh adaptation is the verification of these implementations. Anisotropic metric construction methods are evaluated with analytically defined primal fields and the corresponding entropy variables as adjoint fields. This allows the comparison of different metric formulations and different implementations of the same formulation without the complications of a flow and adjoint solution method. The convergence of the output associated with the entropy variable adjoint is studied for mesh adaptation to these fields and a manufactured solution. Mesh adapted drag output is studied for two simple wings in compressible laminar flow to show fine-mesh convergence of multiple metric construction methods to less than a single drag count. The documentation of these verification exercises helps to prepare these goal-based methods for routine use in more complex simulations for production workflows.

mesh adaptation↗

Modeling and Simulation Efforts to Support Improved Comfort in ARGOS

BACKGROUND: The Active Response Gravity Offload System (ARGOS) provides an analog environment for extravehicular activity (EVA) testing and training. Discomfort has been observed during longer suited test sessions. While the subject’s core is offloaded during surface EVA evaluations, his/her arms experience full Earth gravity and can become overly fatigued, especially during suited tests which involve reaching and prolonged arm extensions. A device (ARGOS Negation of Gravitational Effects on the Limbs: ANGEL) to offload the weight of the arms and suit sleeves is being developed by JSC’s Flight Systems Branch, and here we present preliminary modeling of that device using the open-source biomechanical tool OpenSim [1,2] with an in-house developed plugin. We analyze a series of motions performed by a single shirt-sleeved subject with goals of characterizing the device, validating the model, and predicting whether reduced gravity conditions (i.e., lunar gravity (Lg) or Martian gravity (Mg)) can be accurately simulated with the device, as well as providing comfort to the ARGOS user. METHODS AND RESULTS: To model the offload device, we augment the OpenSim human model topology with the offload mechanism components and joints, using CAD models to represent the mechanism graphically. The joint angles of the device are either obtained from (1) inverse kinematics (IK) using motion capture markers on the various components of the device or (2) calculated in the OpenSim plugin by modeling how the components configure themselves under the offloading spring tension given a particular IK-derived arm position. Given the joint angles of the device, the resulting force on the arm is computed by the plugin and applied as an external load in inverse dynamics (ID) in order to enable study of overall shoulder joint torques as well as offload achieved. We verify the calculated joint angles by using the inverse kinematic data and the forces from manual measurements of the spring both independently and integrated within the device. We found that calculated joint angles generally represent the angles measured and computed with IK, supporting a possible analysis workflow inputting human motion data and observing system behavior under varied design parameters. In two different device configurations in which the maximum applied force was 131 N, our current model accurately captured force with a difference of 2-3 N from measured loads. Though our initial test was performed with a shirt-sleeve subject, arm weights were added to emulate the weight of the suit sleeve and the subject was positioned in a test stand with a Mark-III Hard Upper Torso (HUT) and Portable Life Support System (PLSS) mockup. Arm range of motion tasks were performed outside of the HUT, inside the HUT, and inside the HUT while using the device. A variety of other upper body tasks were completed as well. In summary, we have developed a model to investigate and verify an upper limb offload device currently in development. We believe this model will be a valuable tool not only for device characterization but also to predict proper configurations to simulate Lg or Mg conditions, investigate range of motion concerns, predict limitations such as internal collisions and contacts, and inform future design improvements.

L B Nilsson↗

Anisotropic Goal-Based Mesh Adaptation Metric Clarification and Development

Adaptive unstructured mesh techniques have a limited, but growing impact on production analysis workflows to control discretization error for reliable simulation results. Multiple independent implementations of flow solvers, anisotropic metric construction methods, and anisotropic mesh adaptation mechanics have matured. Goal-based metrics target estimated error in output functions, such as lift and drag, through the guidance of an adjoint solution. A unification of goal-based anisotropic metrics is presented for steady viscous flows, which is an active area of research. These goal-based metrics drive robust and efficient anisotropic mesh adaptation for the calculation of output functions. The super-convergent functional output error behavior of stabilized finite-element methods is exploited without a formal proof, and evidence of super-convergence is shown in numerical experiments. Mesh adapted drag and lift outputs for two simple bodies in compressible viscous flow show convergence of error to less than a single drag count. Asymptotic behavior established for relatively coarse meshes shows the efficiency of this goal-based metric when compared to solution interpolation error control and expert-guided meshing. Anisotropic mesh adaptation techniques are applied to a transport aircraft in a high-lift configuration where variation between approaches decreases with mesh refinement, but asymptotic behavior is not observed with available resources.

goal-based↗

Application of Framework for Estimating Performance and Associated Uncertainty for Modified Aircraft Configurations Using NASA's X-57 Maxwell

A framework to estimate the performance and associated uncertainty of modified configurations of certified aircraft is applied to the X-57 Maxwell aircraft. In previous theoretical studies, the framework was shown to predict performance and uncertainty bounds accurately. The X-57 Maxwell is an experimental aircraft designed to demonstrate the benefits of distributed electric propulsion through a series of four incremental modifications to a Tecnam P2006T aircraft. The available models and data are first shown to be within the application domain of the framework. We then apply the framework to two X-57 Maxwell modifications. We compare the estimated performance and associated uncertainties against the airworthiness criteria. The results indicate that the framework is a promising tool for the certification by analysis workflow. We expect the framework to reduce and supplement the flight testing required to show compliance to airworthiness certification criteria for a modified configuration.

Uncertainty Quantification↗

Application of Framework for Estimating Performance and Associated Uncertainty for Modified Aircraft Configurations Using NASA's X-57 Maxwell

A framework to estimate the performance and associated uncertainty of modified configurations of certified aircraft is applied to the X-57 Maxwell aircraft. In previous theoretical studies, the framework was shown to predict performance and uncertainty bounds accurately. The X-57 Maxwell is an experimental aircraft designed to demonstrate the benefits of distributed electric propulsion through a series of four incremental modifications to a Tecnam P2006T aircraft. The available models and data are first shown to be within the application domain of the framework. We then apply the framework to two X-57 Maxwell modifications. We compare the estimated performance and associated uncertainties against the airworthiness criteria. The results indicate that the framework is a promising tool for the certification by analysis workflow. We expect the framework to reduce and supplement the flight testing required to show compliance to airworthiness certification criteria for a modified configuration.

Uncertainty Quantification↗

EdgeCortix SAKURA-I Machine-Learning, PCIe Accelerator SEE Heavy Ion Test Report

To enable autonomy in space, machine-learning and computer vision applications become invaluable for sensor processing. However, these algorithms are computationally complex and unfeasible for many embedded central processing units (CPUs) and usually require external coprocessors, such as graphics processing units (GPUs) or accelerators specific to the application, including application specific integrated circuits (ASICs). In power-constrained systems, GPUs tend to consume more power than is acceptable (>40W), so lower-power accelerators have shown promise to provide the performance needed under spacecraft constraints. For radiation engineers, developing methodologies that can properly test CPUs, GPUs, and accelerators, and enable comparisons between them remains a necessary complication to solve as the devices become more complex. The methodology in this test aims to be a start in developing a baseline single-event effect (SEE) test for client-device machine learning accelerators. This category of devices do not host their own operating system. This testing campaign is a continuation of a previous 200 MeV proton test performed in January 2024. This report covers two heavy ion tests of the SAKURA-I card: one in April 2024, and one in June 2024. Additional data was needed after the April test due to ion-range issues experienced at higher linear-energy transfers (LETs). These range issues are described in more detail in Section 8. This experiment characterizes SEEs and data error susceptibility of the EdgeCortix SAKURA-I machine-learning accelerator under heavy ions. The device was monitored for single event upsets (SEUs) and single event functional interrupts (SEFIs) at the Lawrence Berkeley National Laboratory’s 88-inch cyclotron. The SAKURA-I board accelerates machine-learning inference applications on a host computer through a PCIex16 connection. For the purposes of devising an end to end automated analysis workflow for this experiment, the YOLO-V5 and SSD300 objection-detection models, and the ResNet-50, EfficientNet, and MobileNetV2 image classification models were used as a representative suite of analytical machine-learning models.

Seth S Roffe↗

Optimisation of the Search for CP-symmetry Violation at the Deep Underground Neutrino Experiment

The Deep Underground Neutrino Experiment (DUNE) is a next-generation long baseline experiment, which will be situated in South Dakota. Its detectors will utilise liquid-argon time projection chamber technology, which is able to capture neutrino interactions with an incredible spatial and calorimetric resolution. With what will become the world’s most intense neutrino beam, a highly capable near detector, and four (10kt fducial mass) far detector modules, DUNE will be able to achieve an ambitious physics programme. Most notably, DUNE will determine whether charge-parity symmetry is broken in neutrino oscillations - a finding that would have significant implications for the understanding of the matter-antimatter asymmetry in our Universe.This thesis presents the optimisation of a CP-violation analysis at DUNE using thePandora pattern-recognition software. The analysis assumes a 3.5 year exposure (1.36 × 1023 protons on target) to a neutrino and an antineutrino beam (7 year total). Only the predicted data of the far detector modules is used; near detector samples are not included. The initial sensitivity to CP-violation is found to be 3.8σ+0.9σ−1.1σ in an estimate that includes oscillation parameter uncertainties, systematic uncertainties and statistical fluctuations, and assumes a normal-ordering of the neutrino mass hierarchy. The performance of the Pandora event reconstruction is linked to that of the analysis, which is found to be limited by the reconstruction of the initial track-like region of electrons and photons. The ShowerRefinement algorithm is developed in response to this and its implementation into the analysis workflow results in an improved sensitivity to CP-violation of 4.6σ+0.9σ−1.0σ. With a perfected neutrino interaction vertex placement, this is further increased to 5.1σ+1.0σ−1.1σ.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Physics demonstration and verification of MOOSE framework reactor module meshing capabilities

The recently developed Reactor module in the open-source MOOSE framework includes finite element meshing capabilities for analysis of common reactor geometries. Capabilities in the Reactor module have been employed to generate meshes for physics applications including a sodium-cooled fast reactor core analysis using Griffin, a fast reactor assembly thermal deformation analysis using MOOSE Tensor Mechanics, and a heat-pipe cooled microreactor coupled analysis using Griffin, Bison, and Sockeye. The process to build these meshes using MOOSE's meshing capabilities is described. Physics simulation results using MOOSE-based meshes have been verified to match results which leverage external meshing software such as Cubit or Argonne's Mesh Tools. MOOSE's Reactor module provides significant advantages compared to the use of external meshing tools when analyzing Cartesian and hexagonal reactor lattices using MOOSE-based applications: accessibility to the end user, low barrier to entry for new users, speed of mesh generation, volume preservation of meshed fuel pins, and simplification of analysis workflow when using MOOSE applications.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Lunar Terrain Coverage Analysis Data Delivery Workflow

In this work, we are developing a lunar terrain database to enable fast rendering of sun illumination and earth visibility for a proposed coverage analysis tool. This development will advance lunar mission design and formulation for current and future communications architectures, and will aid in lunar surface mission planning and communications/navigation operations. Our effort can be described in three steps: (1) we parallelize a brute force algorithm, which computes elevation masks from laser altimetry data acquired by the Lunar Reconnaissance Orbiter’s (LRO) Lunar Orbiter Laser Altimeter (LOLA); (2) we investigate parallel I/O methods to store terrain mask information from step (1) into a parallel file system; and (3) we finally deliver data to the terrain coverage analysis tool.

Michels, Dominik↗

A versatile machine learning workflow for high-throughput analysis of supported metal catalyst particles

Accurate and efficient characterization of nanoparticles (NPs), particularly regarding particle size distribution, is essential for advancing our understanding of their structure-property relationship and facilitating their design for various applications. In this study, we introduce a novel two-stage artificial intelligence (AI)-driven workflow for NP analysis that leverages prompt engineering techniques from state-of-the-art single-stage object detection and large-scale vision transformer (ViT) architectures. This methodology is applied to transmission electron microscopy (TEM) and scanning TEM (STEM) images of heterogeneous catalysts, enabling high-resolution, high-throughput analysis of particle size distributions for supported metal catalyst NPs. The model's performance in detecting and segmenting NPs is validated across diverse heterogeneous catalyst systems, including various metals (Ru, Cu, PtCo, and Pt), supports (silica (SiO 2 ), γ-alumina (γ-Al 2 O 3 ), and carbon black), and particle diameter size distributions with mean and standard deviations ranging from 1.6 ± 0.2 nm to 9.7 ± 4.6 nm. The proposed machine learning (ML) methodology achieved an average F1 overlap score of 0.91 ± 0.01 and demonstrated the ability to disentangle overlapping NPs anchored on catalytic support materials. The segmentation accuracy is further validated using the Hausdorff distance and robust Hausdorff distance metrics, with the 90th percent of the robust Hausdorff distance showing errors within 0.4 ± 0.1 nm to 1.4 ± 0.6 nm. In conclusion, our AI-assisted NP analysis workflow demonstrates robust generalization across diverse datasets and can be readily applied to similar NP segmentation tasks without requiring costly model retraining.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Integrating HPC, AI, and Workflows for Scientific Data Analysis: Report from Dagstuhl Seminar 23352

The Dagstuhl Seminar 23352, titled “Integrating HPC, AI, and Workflows for Scientific Data Analysis,” held from August 27 to September 1, 2023, was a significant event focusing on the synergy between High-Performance Computing (HPC), Artificial Intelligence (AI), and scientific workflow technologies. The seminar recognized that modern Big Data analysis in science rests on three pillars: workflow technologies for reproducibility and steering, AI and Machine Learning (ML) for versatile analysis, and HPC for handling large data sets. These elements, while crucial, have traditionally been researched separately, leading to gaps in their integration. The seminar aimed to bridge these gaps, acknowledging the challenges and opportunities at the intersection of these technologies. The event highlighted the complex interplay between HPC, workflows, and ML, noting how ML has increasingly been integrated into scientific workflows, thereby enhancing resource demands and bringing new requirements to HPC architectures, like support for GPUs and iterative computations. The seminar also addressed the challenges in adapting HPC for large-scale ML tasks, including in areas like deep learning, and the need for workflow systems to evolve to leverage ML in data analysis fully. Moreover, the seminar explored how ML could optimize scientific workflow systems and HPC operations, such as through improved scheduling and fault tolerance. A key focus was on identifying prestigious use cases of ML in HPC and understanding their unique, unmet requirements. The stochastic nature of ML and its impact on the reproducibility of data analysis on HPC systems was also a topic of discussion.

97 MATHEMATICS AND COMPUTING↗

Meshing, Language Server Protocol, and other User-Oriented MOOSE Framework Improvements to Enhance Reactor Analysis Capabilities and Workflows

The open-source Multiphysics Object-Oriented Simulation Environment (MOOSE) framework underpins most of the Nuclear Energy Advanced Modeling and Simulation (NEAMS) physics applications and coupling methods. Users interact with MOOSE in multiple ways to enable the construction of complex multiphysics models, including but not limited to compilation, input creation and syntax validation, meshing, solving the physics problem via MOOSE-based solvers and coupling, and output inspection. In FY23, numerous enhancements have been made to MOOSE to enhance the user experience. Reactor-oriented meshing capabilities in MOOSE have been expanded, an online tutorial was created and hosted on the MOOSE site, and a hands-on workshop was held for more than 100 users. The Language Server Protocol (LSP) capability has been implemented in MOOSE to better communicate correct syntax to the NEAMS Workbench user interface which is commonly used to validate input and submit jobs by users. Finally, several other user-facing improvements were made including the implementation of improved screen output and logging control, enhancements to the initial condition system, and enhancements of the MultiApp system commonly used for coupling. Collectively, these enhancements were driven by user needs and directly improve user ability to construct complex multiphysics models for nuclear reactors.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗