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At least 127 records · Page 7

Tumor-promoting UBR4 coordinates impaired mitophagy–associated senescence and lung adenocarcinoma pathogenesis

Cellular senescence, an irreversible cell cycle arrest, plays a pivotal role in development, aging, and tumor suppression. However, the fundamental pathway coordinating senescence and neoplastic transformation remains unclear. Here, we describe the tumorigenic involvement of ubiquitin protein ligase E3 component n-recognin 4 (UBR4), an E3 ubiquitin ligase of the N-degron pathway, in lung adenocarcinoma (LUAD). Public genome databases revealed high UBR4 expression in LUAD patients, associated with a dysregulated cell cycle and impaired mitochondrial homeostasis.UBR4knockout (ΔUBR4) in A549 lung cancer cells induced cellular senescence with defective mitochondria. Restoration of UBR4 or antioxidant treatment reversed the ΔUBR4 phenotypes caused by impaired mitophagy. Mitochondrial stress exacerbated mitochondrial dysfunction in ΔUBR4 cells, contributing to diverse cellular phenotypes. Additionally, ΔUBR4 cells exhibited substantially slow tumor growth in mouse xenograft models. In LUAD patients, UBR4 levels correlated with tumor stage, mitophagy markers, and poor survival. These findings suggest a tumor-promoting function of UBR4 in LUAD by regulating mitochondrial quality control. Further research into the pharmacological inhibition of UBR4 could open promising avenues for developing effective antitumor therapies targeting LUAD.

Science & Technology - Other Topics↗

Magnetic control assembly reports

Results are summarized of the qualification level vibration tests performed on the magnet control assembly (MCA) for Nimbus and ERTS satellites. The MCA electronics and probe units have demonstrated the capability to survive qualification sinusoidal and random vibration levels. The functional testing indicated normal operation of the units after each axis of vibration. Visual inspection indicated no evidence of degradation. Post vibration acceptance testing verified normal operation of the MCA.

Stickler, A. C.↗

Optimum design of spacecraft radiators for large capacity or long duration mission applications

Results of trade studies comparing optimum pumped fluid and hybrid heat pipe/pumped fluid radiator designs are presented. Design variables considered in the system optimization analyses include transport fluid properties and Reynolds number, pump loop component reliabilities, micrometeoroid protection, heat pipe spacing, manifolding and flow routing in pumped fluid designs, transport tubing spacing and diameters, and radiator fin parameters. Criteria for evaluating candidate radiator system designs include mass, radiator area, and overall system reliability. The studies show advantages in constructing large systems from small independent subsystems with oversizing to account for subsystem failures. The optimum size and survivability of the subsystems are identified as a function of the radiator construction, the system heat rejection requirements, the mission duration, and the system reliability requirements.

Leach, J. W.↗

Fortran for the nineties

Fortran has largely enjoyed prominence for the past few decades as the computer programming language of choice for numerically intensive scientific, engineering, and process control applications. Fortran's well understood static language syntax has allowed resulting parsers and compiler optimizing technologies to often generate among the most efficient and fastest run-time executables, particularly on high-end scalar and vector supercomputers. Computing architectures and paradigms have changed considerably since the last ANSI/ISO Fortran release in 1978, and while FORTRAN 77 has more than survived, it's aged features provide only partial functionality for today's demanding computing environments. The simple block procedural languages have been necessarily evolving, or giving way, to specialized supercomputing, network resource, and object-oriented paradigms. To address these new computing demands, ANSI has worked for the last 12-years with three international public reviews to deliver Fortran 90. Fortran 90 has superseded and replaced ISO FORTRAN 77 internationally as the sole Fortran standard; while in the US, Fortran 90 is expected to be adopted as the ANSI standard this summer, coexisting with ANSI FORTRAN 77 until at least 1996. The development path and current state of Fortran will be briefly described highlighting the many new Fortran 90 syntactic and semantic additions which support (among others): free form source; array syntax; new control structures; modules and interfaces; pointers; derived data types; dynamic memory; enhanced I/O; operator overloading; data abstraction; user optional arguments; new intrinsics for array, bit manipulation, and system inquiry; and enhanced portability through better generic control of underlying system arithmetic models. Examples from dynamical astronomy, signal and image processing will attempt to illustrate Fortran 90's applicability to today's general scalar, vector, and parallel scientific and engineering requirements and object oriented programming paradigms. Time permitting, current work proceeding on the future development of Fortran 2000 and collateral standards will be introduced.

Himer, J. T.↗

NASA's Human Rating Requirements - A Historical Interpretive Perspective

Section 3.0 of NASA's Human Rating Requirements for Space Systems, NPR 8705.2, represents technical engineering requirements that the Agenc y requires of Human Space Systems. In many cases the requirements are not unlike requirements for any space system, crewed or uncrewed, th ey deal with successfully accomplishing the mission objectives. Howev er, they go one step further and have requirements that go beyond suc cessful completion of the mission and dictate functions or actions ne cessary to assure the survival of the crew. In that regard they are u nique from other space system requirements. Even with their uniquenes s the technical requirements of the NPR 8705.2 have been relatively u nchanged in overall intent over the revisions. They all have provided for system redundancy, crew habitable environment, crew situational awareness, crew operation, system control, emergency egress and abort systems. In a few cases the intent of the requirement was changed in tentionally, either to restrict certain types of systems or their fun ctions, or to encompass lessons learned from previous programs. For t he most part the requirements are non controversial and represent the current best practices for human space systems, however, a few requi rements are always debated and have evolved over revisions of the NPR due to studies conducted with various programs like the Orbital Spac e Plane and the Constellation Programs. Those requirements will be di scussed using results of trade studies conducted during past programs highlighting how these particular requirements have evolved through the revisions of the NPR. Comments will also be provided for requirem ents that although not debated, have provided challenges in interpret ation.

Langford, Gerald↗

Distributed Engine Control Empirical/Analytical Verification Tools

NASA's vision for an intelligent engine will be realized with the development of a truly distributed control system featuring highly reliable, modular, and dependable components capable of both surviving the harsh engine operating environment and decentralized functionality. A set of control system verification tools was developed and applied to a C-MAPSS40K engine model, and metrics were established to assess the stability and performance of these control systems on the same platform. A software tool was developed that allows designers to assemble easily a distributed control system in software and immediately assess the overall impacts of the system on the target (simulated) platform, allowing control system designers to converge rapidly on acceptable architectures with consideration to all required hardware elements. The software developed in this program will be installed on a distributed hardware-in-the-loop (DHIL) simulation tool to assist NASA and the Distributed Engine Control Working Group (DECWG) in integrating DCS (distributed engine control systems) components onto existing and next-generation engines.The distributed engine control simulator blockset for MATLAB/Simulink and hardware simulator provides the capability to simulate virtual subcomponents, as well as swap actual subcomponents for hardware-in-the-loop (HIL) analysis. Subcomponents can be the communication network, smart sensor or actuator nodes, or a centralized control system. The distributed engine control blockset for MATLAB/Simulink is a software development tool. The software includes an engine simulation, a communication network simulation, control algorithms, and analysis algorithms set up in a modular environment for rapid simulation of different network architectures; the hardware consists of an embedded device running parts of the CMAPSS engine simulator and controlled through Simulink. The distributed engine control simulation, evaluation, and analysis technology provides unique capabilities to study the effects of a given change to the control system in the context of the distributed paradigm. The simulation tool can support treatment of all components within the control system, both virtual and real; these include communication data network, smart sensor and actuator nodes, centralized control system (FADEC full authority digital engine control), and the aircraft engine itself. The DECsim tool can allow simulation-based prototyping of control laws, control architectures, and decentralization strategies before hardware is integrated into the system. With the configuration specified, the simulator allows a variety of key factors to be systematically assessed. Such factors include control system performance, reliability, weight, and bandwidth utilization.

DeCastro, Jonathan↗

Probing many-body localization on a noisy quantum computer

A disordered quantum system of interacting particles exhibits localized behavior when the disorder is large compared to the interaction strength. Studying this phenomenon on a quantum computer with no, or limited, error correction is challenging because even weak coupling to a thermal environment destroys most signatures of localization. Fortunately, spectral functions of local operators are known to contain features that can survive the presence of noise. In these spectra, discrete peaks and a soft gap at low frequencies compared to the thermal phase indicate localization. Here, we present the computation of spectral functions on a trapped-ion quantum computer for a one-dimensional Heisenberg model with disorder. Further, we design an error-mitigation technique which is effective at removing the noise from the measurement allowing clear signatures of localization to emerge as the disorder increases. Furthermore, we show that spectral functions can serve as a robust and scalable diagnostic of many-body localization on current and future generations of quantum computers.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Disruption of Dark Matter Minihalos in the Milky Way Environment: Implications for Axion Miniclusters and Early Matter Domination

Many theories of dark matter beyond the weakly interacting massive particles paradigm feature an enhanced matter power spectrum on subparsec scales, leading to the formation of dense dark matter minihalos. Future local observations are promising to search for and constrain such substructures. The survival probability of these dense minihalos in the Milky Way environment is crucial for interpreting local observations. In this work, we investigate two environmental effects: stellar disruption and (smooth) tidal disruption. These two mechanisms are studied using semianalytic models and idealized N-body simulations. For stellar disruption, we perform a series of N-body simulations of isolated minihalo–star encounters to test and calibrate analytic models of stellar encounters before applying the model to the realistic Milky Way disk environment. For tidal disruption, we perform N-body simulations to confirm the effectiveness of the analytic treatment. Finally, we propose a framework to combine the hierarchical assembly and infall of minihalos to the Milky Way with the late-time disruption mechanisms. We make predictions for the mass functions of minihalos in the Milky Way. The mass survival fraction (at M$_{mh}$ ≥ 10$^{−12}$M$_{⊙}$) of dense dark matter minihalos, e.g., for axion miniclusters and minihalos from early matter domination, is ∼60% with the relatively low-mass, compact population surviving. The survival fraction is insensitive to the detailed model parameters. We discuss various implications of the framework and future direct detection prospects.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Pericytes control vascular stability and auditory spiral ganglion neuron survival

The inner ear has a rich population of pericytes, a multi-functional mural cell essential for sensory hair cell heath and normal hearing. However, the mechanics of how pericytes contribute to the homeostasis of the auditory vascular-neuronal complex in the spiral ganglion are not yet known. In this study, using an inducible and conditional pericyte depletion mouse (PDGFRB-CreER T2 ; ROSA26iDTR) model, we demonstrate, for the first time, that pericyte depletion causes loss of vascular volume and spiral ganglion neurons (SGNs) and adversely affects hearing sensitivity. Using an in vitro trans-well co-culture system, we show pericytes markedly promote neurite and vascular branch growth in neonatal SGN explants and adult SGNs. The pericyte-controlled neural growth is strongly mediated by pericyte-released exosomes containing vascular endothelial growth factor-A (VEGF-A). Treatment of neonatal SGN explants or adult SGNs with pericyte-derived exosomes significantly enhances angiogenesis, SGN survival, and neurite growth, all of which were inhibited by a selective blocker of VEGF receptor 2 (Flk1). Our study demonstrates that pericytes in the adult ear are critical for vascular stability and SGN health. Cross-talk between pericytes and SGNs via exosomes is essential for neuronal and vascular health and normal hearing.

59 BASIC BIOLOGICAL SCIENCES↗

Analysis of population mortality kinetics with application to the longevity followup of the Navy's '1,000 aviators'

A simple physiological model of mortality kinetics is used to assess the intuitive concept that the aging rates of populations are proportional to their mortality rates. It is assumed that the vitality of an individual can be expressed as a simple summation of the weighted functional capacities of its organs and homeostatic systems that are indispensable for survival. It is shown that the mortality kinetics of a population can be derived by a linear transformation of the frequency distribution of vitality, assuming a uniform constant rate of decline of the physiological functions. A simple comparison of two populations is not possible when they have different vitality frequency distributions. Analysis of the data using the model suggests that the differences in decline of survivorship with age between the military pilot population, a medically insured population, and the control population can be accounted for by the effect of physical selection on the vitality frequency distribution of the screened populations.

Economos, A. C.↗

Computer Modeling of Protocellular Functions: Peptide Insertion in Membranes

Lipid vesicles became the precursors to protocells by acquiring the capabilities needed to survive and reproduce. These include transport of ions, nutrients and waste products across cell walls and capture of energy and its conversion into a chemically usable form. In modem organisms these functions are carried out by membrane-bound proteins (about 30% of the genome codes for this kind of proteins). A number of properties of alpha-helical peptides suggest that their associations are excellent candidates for protobiological precursors of proteins. In particular, some simple a-helical peptides can aggregate spontaneously and form functional channels. This process can be described conceptually by a three-step thermodynamic cycle: 1 - folding of helices at the water-membrane interface, 2 - helix insertion into the lipid bilayer and 3 - specific interactions of these helices that result in functional tertiary structures. Although a crucial step, helix insertion has not been adequately studied because of the insolubility and aggregation of hydrophobic peptides. In this work, we use computer simulation methods (Molecular Dynamics) to characterize the energetics of helix insertion and we discuss its importance in an evolutionary context. Specifically, helices could self-assemble only if their interactions were sufficiently strong to compensate the unfavorable Free Energy of insertion of individual helices into membranes, providing a selection mechanism for protobiological evolution.

Rodriquez-Gomez, D.↗

Deconstructing the root system of grasses through an exploration of development, anatomy and function

Abstract Well‐adapted root systems allow plants to grow under resource‐limiting environmental conditions and are important determinants of yield in agricultural systems. Important staple crops such as rice and maize belong to the family of grasses, which develop a complex root system that consists of an embryonic root system that emerges from the seed, and a postembryonic nodal root system that emerges from basal regions of the shoot after germination. While early seedling establishment is dependent on the embryonic root system, the nodal root system, and its associated branches, gains in importance as the plant matures and will ultimately constitute the bulk of below‐ground growth. In this review, we aim to give an overview of the different root types that develop in cereal grass root systems, explore the different physiological roles they play by defining their anatomical features, and outline the genetic networks that control their development. Through this deconstructed view of grass root system function, we provide a parts‐list of elements that function together in an integrated root system to promote survival and crop productivity.

59 BASIC BIOLOGICAL SCIENCES↗

Reliability estimation procedures and CARE: The Computer-Aided Reliability Estimation Program

Ultrareliable fault-tolerant onboard digital systems for spacecraft intended for long mission life exploration of the outer planets are under development. The design of systems involving self-repair and fault-tolerance leads to the companion problem of quantifying and evaluating the survival probability of the system for the mission under consideration and the constraints imposed upon the system. Methods have been developed to (1) model self-repair and fault-tolerant organizations; (2) compute survival probability, mean life, and many other reliability predictive functions with respect to various systems and mission parameters; (3) perform sensitivity analysis of the system with respect to mission parameters; and (4) quantitatively compare competitive fault-tolerant systems. Various measures of comparison are offered. To automate the procedures of reliability mathematical modeling and evaluation, the CARE (computer-aided reliability estimation) program was developed. CARE is an interactive program residing on the UNIVAC 1108 system, which makes the above calculations and facilitates report preparation by providing output in tabular form, graphical 2-dimensional plots, and 3-dimensional projections. The reliability estimation of fault-tolerant organization by means of the CARE program is described.

Mathur, F. P.↗

Einstein Observatory survey of X-ray emission from solar-type stars - The late F and G dwarf stars

Results of a volume-limited X-ray survey of stars of luminosity classes IV and V in the spectral range F7-G9 observed with the Einstein Observatory are presented. Using survival analysis techniques, the stellar X-ray luminosity function in the 0.15-4.0 keV energy band for both single and multiple sources. It is shown that the difference in X-ray luminosity between these two classes of sources is consistent with the superposition of individual components in multiple-component systems, whose X-ray properties are similar to those of the single-component sources. The X-ray emission of the stars in our sample is well correlated with their chromospheric CA II H-K line emission and with their projected equatorial rotational velocity. Comparison of the X-ray luminosity function constructed for the sample of the dG stars of the local population with the corresponding functions derived elsewhere for the Hyades, the Pleiades, and the Orion Ic open cluster confirms that the level of X-ray emission decreases with stellar age.

Maggio, A.↗

The growth of the continental crust: Constraints from radiogenic isotope geochemistry

Most models for evolution of continental crust are expressed in the form of a diagram illustrating the cumulative crustal mass (normalized relative to the present crustal mass) as a function of time. Thus, geochronological data inevitably play a major role in either constructing or testing crustal growth models. For all models, determining the start-time for effective crustal accretion is of vital importance. To this end, the continuing search for, and reliable characterization of, the most ancient crustal rock-units remains a worthy enterprise. Another important role for geochronology and radiogenic isotope geochemistry is to assess the status of major geological events as period either of new crust generation or of reworking of earlier formed continental crust. For age characterization of major geological provinces, using the critieria outined, the mass (or volume) of crust surviving to the present day should be determinable as a function of crust formation age. More recent developments, however, appear to set severe limitations on recycling of crust, at least by the process of sediment subduction. In modeling crustal growth without recycling, valuable constaints on growth rate variations through time can be provided if variations in the average age of the continental crust can be monitored through geological history. The question of the average age of the exposed continental crust was addressed by determining Sm-Nd crustal residence model ages (T-CR) for fine-grained sediment loads of many of the world's major rivers.

Taylor, Paul N.↗

Structure and Function of REP34 Implicates Carboxypeptidase Activity in Francisella tularensis Host Cell Invasion

Francisella tularensis is the etiological agent of tularemia, or rabbit fever. Although F. tularensis is a recognized biothreat agent with broad and expanding geographical range, its mechanism of infection and environmental persistence remain poorly understood. Previously, we identified seven F. tularensis proteins that induce a rapid encystment phenotype (REP) in the free-living amoeba, Acanthamoeba castellanii. Encystment is essential to the pathogen's long term intracellular survival in the amoeba. Here, we characterize the cellular and molecular function of REP34, a REP protein with a mass of 34 kDa. A REP34 knock-out strain of F. tularensis has a reduced ability to both induce encystment in A. castellanii and invade human macrophages. We determined the crystal structure of REP34 to 2.05-Å resolution and demonstrate robust carboxypeptidase B-like activity for the enzyme. REP34 is a zinc-containing monomeric protein with close structural homology to the metallocarboxypeptidase family of peptidases. REP34 possesses a novel topology and substrate binding pocket that deviates from the canonical funnelin structure of carboxypeptidases, putatively resulting in a catalytic role for a conserved tyrosine and distinct S1' recognition site. Taken together, these results identify REP34 as an active carboxypeptidase, implicate the enzyme as a potential key F. tularensis effector protein, and may help elucidate a mechanistic understanding of F. tularensis infection of phagocytic cells.

59 BASIC BIOLOGICAL SCIENCES↗

EEPD1 evolved a unique DNA clamping dimer protecting reversed replication forks

Exonuclease/endonuclease/phosphatase (EEP)-fold hydrolases are canonically monomeric phosphodiesterases exemplified by APE1, DNase I, and TDP2 nucleases. While EEP family domain containing protein 1 (EEPD1) acts in DNA stress responses, its proposed nuclease activities are enigmatic. Here, we integrate hybrid structural methods, evolution, biochemistry, cancer genomics, plus molecular and cell biology to define EEPD1 structure, assembly, and function at stalled DNA replication forks. Results imply EEPD1 surprisingly requires both unique EEP domain dimer and distinctive tandem Helix-hairpin-Helix [(HhH) 2 ] domains to clamp double-stranded (ds) DNA at reversed DNA replication forks for fork protection. Small-angle X-ray Scattering (SAXS), crystal, and cryo-EM structures unveil an unprecedented tryptophan handshake dimer, conserved interface di-Trp-Pro pocket, and adjustable “wrist” enabling an open-closed conformational switch. EEPD1 dimer cooperatively binds complex dsDNA replication fork intermediates but alone lacks nuclease activity due to loss of key EEP catalytic residues during Metazoan evolution and atmospheric oxygen buildup. Instead, EEPD1 prevents nucleolytic degradation of reversed replication forks by MRE11. Furthermore, cancer bioinformatics support oxidative damage-dependent EEPD1 association as a significant modulator of overall patient survival. Collective findings uncover unexpected EEP dimer and fork protection function in clamping, not cleaving, reversed replication forks for metazoan oxidative stress responses controlling genome stability and cancer outcomes.

Shen, Runze [Univ. of Texas, Houston, TX (United S↗

Drought and plant litter chemistry alter microbial gene expression and metabolite production

Drought represents a significant stress to microorganisms and is known to reduce microbial activity and organic matter decomposition in Mediterranean ecosystems. However, we lack a detailed understanding of the drought stress response of microbial decomposers. Here we present metatranscriptomic and metabolomic data on the physiological response of in situ microbial communities on plant litter to long-term drought in Californian grass and shrub ecosystems. We hypothesised that drought causes greater microbial allocation to stress tolerance relative to growth pathways. In grass litter, communities from the decade-long ambient and reduced precipitation treatments had distinct taxonomic and functional profiles. The most discernable physiological signatures of drought were production or uptake of compatible solutes to maintain cellular osmotic balance, and synthesis of capsular and extracellular polymeric substances as a mechanism to retain water. The results show a clear functional response to drought in grass litter communities with greater allocation to survival relative to growth that could affect decomposition under drought. In contrast, communities on chemically more diverse and complex shrub litter had smaller physiological differences in response to long-term drought but higher investment in resource acquisition traits across precipitation treatments, suggesting that the functional response to drought is constrained by substrate quality. Our findings suggest, for the first time in a field setting, a trade off between microbial drought stress tolerance, resource acquisition and growth traits in plant litter microbial communities.

59 BASIC BIOLOGICAL SCIENCES↗