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221S-1a inhibits endothelial proliferation in pathological angiogenesis through ERK/c-Myc signaling
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Apolipoprotein C3 and circulating mediators of preadipocyte proliferation in states of lipodystrophy
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A surprising proliferation of detwinning in β -tin at extreme loading rates
Integrating data from dynamic compression experiments of condensed matter across three national laboratories has led to insight and quantitative calibration of materials strength over decades of loading rate. For many materials, a single strength model (such as PTW) is sufficient to capture the flow-stress strain rate relationship which is monotonic. Here, we show here that β -tin, a tetragonal metal, exhibits dramatic deviations from this behavior. Naive fitting to a single PTW model is insufficient to capture the behavior; indeed, such resulting inferred flow stress versus strain exhibits a non-monotonic behavior. We suggest a resolution to this by proposing that in β -tin there are important Bauschinger effects arising from favorable conditions for twinning and detwinning. A simple yield surface model when paired with PTW hardening captures the experimental data.
Proliferation of Faulty Materials Data Analysis in the Literature
As a group of subject matter experts in X-ray photoelectron spectroscopy (XPS), we write this letter to raise awareness of the epidemic of poor and incorrect materials data analysis in the Literature. This is a chronic and growing problem with very undesirable consequences. This issue may contribute to what has been identified as a “reproducibility crisis”1,2 that was the subject of a recent U.S. National Academies study. We are using XPS as one example of what we observe to be a systemic issue.
Cas9-derived peptides presented by MHC Class II that elicit proliferation of CD4 + T-cells
CRISPR–Cas9 mediated genome editing offers unprecedented opportunities for treating human diseases. There are several reports that demonstrate pre-existing immune responses to Cas9 which may have implications for clinical development of CRISPR-Cas9 mediated gene therapy. Here we use 209 overlapping peptides that span the entire sequence of Staphylococcus aureus Cas9 (SaCas9) and human peripheral blood mononuclear cells (PBMCs) from a cohort of donors with a distribution of Major Histocompatibility Complex (MHC) alleles comparable to that in the North American (NA) population to identify the immunodominant regions of the SaCas9 protein. We also use an MHC Associated Peptide Proteomics (MAPPs) assay to identify SaCas9 peptides presented by MHC Class II (MHC-II) proteins on dendritic cells. Using these two data sets we identify 22 SaCas9 peptides that are both presented by MHC-II proteins and stimulate CD4 + T-cells.
A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling
Mechanistic models of how single cells respond to different perturbations can help integrate disparate big data sets or predict response to varied drug combinations. However, the construction and simulation of such models have proved challenging. Here, we developed a python-based model creation and simulation pipeline that converts a few structured text files into an SBML standard and is high-performance- and cloud-computing ready. We applied this pipeline to our large-scale, mechanistic pan-cancer signaling model (named SPARCED) and demonstrate it by adding an IFNγ pathway submodel. We then investigated whether a putative crosstalk mechanism could be consistent with experimental observations from the LINCS MCF10A Data Cube that IFNγ acts as an anti-proliferative factor. The analyses suggested this observation can be explained by IFNγ-induced SOCS1 sequestering activated EGF receptors. This work forms a foundational recipe for increased mechanistic model-based data integration on a single-cell level, an important building block for clinically-predictive mechanistic models.
Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi
With >7000 species the order of rust fungi has a disproportionately large impact on agriculture, horticulture, forestry and foreign ecosystems. The infectious spores are typically dikaryotic, a feature unique to fungi in which two haploid nuclei reside in the same cell. A key example is Phakopsora pachyrhizi, the causal agent of Asian soybean rust disease, one of the world’s most economically damaging agricultural diseases. Despite P. pachyrhizi’s impact, the exceptional size and complexity of its genome prevented generation of an accurate genome assembly. Here, we sequence three independent P. pachyrhizi genomes and uncover a genome up to 1.25 Gb comprising two haplotypes with a transposable element (TE) content of ~93%. We study the incursion and dominant impact of these TEs on the genome and show how they have a key impact on various processes such as host range adaptation, stress responses and genetic plasticity.
Author Correction: Transcription Factor 4 loss-of-function is associated with deficits in progenitor proliferation and cortical neuron content
Correction to: Nature Communicationshttps://doi.org/10.1038/s41467-022-29942-w, published online 02 May 2022 In the version of the article initially published, the text “UCSD has filed a patent application (WO2022072709A1), in which F.P. and A.R.M. are inventors, containing some results regarding the TCF4 correction overexpression strategy described in this paper. The patent was published on 04-07-2022” was missing from the Competing interests section and has now been added to the HTML and PDF versions of the article.
Heterotrimeric G‐protein, Gi1, is involved in the regulation of proliferation, neuronal migration, and dendrite morphology during cortical development in vivo
Abstract Heterotrimeric G‐proteins are composed of α, β, and γ subunits, and function as signal transducers. Critical roles of the α‐subunits of Gi/o family heterotrimeric G‐proteins, Gαi2, and Gαo1, have so far been reported in brain development and neurodevelopmental disorders. In this study, we tried to clarify the role of Gαi1, α‐subunit of another Gi/o family member Gi1, during corticogenesis, based on the recent identification of its gene abnormalities in neurodevelopmental disorders. In western blot analyses, Gαi1 was found to be expressed in mouse brain in a developmental stage‐dependent manner. Morphological analyses revealed that Gαi1 was broadly distributed in cerebral cortex with relatively high expression in the ventricular zone (VZ) at embryonic day (E) 14. Meanwhile, Gαi1 was enriched in membrane area of yet unidentified early mitotic cells in the VZ and the marginal zone at E14. Acute knockdown of Gαi1 with in utero electroporation in cerebral cortex caused cell cycle elongation of the neural progenitor cells and promoted their cell cycle exit. Gαi1‐deficient cortical neurons also exhibited delayed radial migration during corticogenesis, with abnormally elongated leading processes and hampered nucleokinesis. In addition, silencing of Gαi1 prevented basal dendrite development. The migration and dendritic phenotypes were at least partially rescued by an RNAi‐resistant version of Gαi1. Collectively, these results strongly suggest a crucial role of Gi1 in cortical development, and disturbance of its function may cause deficits in synaptic network formation, leading to neurodevelopmental disorders. image
Sodium-Cooled Fast Reactor Proliferation Resistance and Physical Protection White Paper
The Sodium-Cooled Fast Reactor (SFR) system was identified during the Generation IV Technology Roadmap as a promising technology to perform the actinide management mission and, if enhanced economics for the system could be realized, also the electricity and heat production missions. The main characteristics of the SFR that make it especially suitable for the actinide management mission are: Consumption of transuranics in a closed fuel cycle, thus reducing the radiotoxicity and heat load which facilitates waste disposal and geologic isolation; Enhanced utilization of uranium resources through efficient management of fissile materials and multi-recycle; and, High level of safety achieved through inherent and passive means that accommodate transients and bounding events with significant safety margins.
Proliferation of Interstellar Plutonium into the Solar System
The astrophysical site of production of actinides in the galaxy has long been debated. Recently, neutron star mergers have been shown to produce actinides, though their contribution to the total amount is unknown. A second site, Type II supernovae, likely also contributes. The relative frequencies and production totals of these two sources lead to two very different and distinguishable predictions for the contemporary concentration of actinides in the local interstellar medium. This project was aimed at measuring live cosmological 244 Pu in lunar soil in order to infer the current interstellar concentration of Pu for comparison with the concentration inferred in the early solar system 4.5 billion years ago. This requires detecting Pu in lunar soil at a concentration of 10 4 – 10 5 atoms/g. We developed Pu separation and detection methodologies that exceed the current state of the art by ~100× and are now capable of making this extremely challenging measurement in principle. Based on that success we obtained a sample of lunar soil from the Apollo 17 mission. We have not yet analyzed it owing to difficulties in quantitatively and reproducibly transferring such minute quantities of Pu from the separation step to the analysis step. Once this technical issue is resolved we will be able to analyze the lunar soil.
Investigation of Event-based Sensing for Proliferation Detection.
Abstract not provided.
Highly sensitive isotope ratio measurements in support of nuclear non-proliferation, safeguards and nuclear forensics programs [Slides]
Abstract not provided.