Watchmen 3.3.0 Release Notes
This document describes the changes to Watchmen. This includes improvements to stability, search features, display of more detailed sample information and user access via authentication.
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This document describes the changes to Watchmen. This includes improvements to stability, search features, display of more detailed sample information and user access via authentication.
The Western Pacific Convection-Permitting (CP) Regionally Refined Model (RRM) used for 2023 Jingjinji Flood event is developed based on the Simple Cloud-Resolving E3SM Atmosphere Model (SCREAM) version 0 (Fortran code) under the United States (U.S) Department of Energy (DOE) Energy Exascale Earth System Model (E3SM) project (Caldwell et al., 2021) and the regionally refined model (RRM) configuration (Tang et al., 2019, 2023; Zhang et al., 2024; Bogenschutz et al., 2024).
Fifteen years have passed since the March 11, 2011, the Great East Japan Earthquake (GEJE) triggered a tsunami that inundated the Fukushima Daiichi Nuclear Power Station (Daiichi or 1F) and led to severe accidents in multiple units at the plant. During these fifteen years since these events, Daiichi forensics examinations and evaluations have revealed many insights for enhancing the safety of nuclear power plants worldwide. However, uncertainties remain regarding the events after the GEJE. Additional Daiichi forensics information is required to inform future Decontamination and Decommissioning (D&D) activi- ties conducted by the plant owner, Tokyo Electric Power Company Holdings, Incorporated (TEPCO Hold- ings). This forensics information also has important implications for the safety and operation of U.S. commercial nuclear power plants. A collaborative U.S. and Japanese effort, which includes approximately 50 experts in reactor safety and plant operations, was initiated in 2014 by the Department of Energy Office of Nuclear Energy (U.S. DOE-NE) to identify Daiichi examination needs and evaluate recent Daiichi examination data to address these needs. This collaborative effort, which is beneficial to the U.S. and Japan, continues as Japan moves forward with D&D activities.
The location of an antenna, and indeed the radar system it serves, is typically presumed to be its phase center. This is the point from which a far-field apparent spherical wavefront seems to be centered. Even when a true phase center doesn’t exist, an ‘apparent’ phase center can still be calculated for the neighborhood of some direction of interest, often the mainlobe of the beam. Such calculations are especially necessary for non-symmetric arrays, or sub-arrays.
Modern Active Electronically Steerable Array (AESA) antennas offer substantial control over transmit and receive antenna beam forming, including via elemental weighting to achieve a desired tapered aperture. Elemental taper weighting may generally be complex, with both amplitude and phase components. This includes phase-only tapers. However, array tapers may also have the adverse side effect of diminishing transmit and/or receive effectiveness. This is readily calculated, and must be ...
Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis
Monte Carlo simulations are a powerful technique and are widely used in different fields. When applied to complex molecular systems with long chains, such as those in synthetic polymers and proteins, they have the advantage of providing a fast and computationally efficient way to sample equilibrium ensembles and calculate thermodynamic and structural properties under desired conditions. Conformational Monte Carlo techniques employ a move set to perform the transitions in the simulation Markov chain. While accepted conformations must preserve the sequential bonding of the protein chain model and excluded volume among its units, the moves themselves may take the chain across itself. We call this a break in linear topology preservation. In this manuscript, we show, using simple protein models, that there is no difference in equilibrium properties calculated with a move set that preserves linear topology and one that does not. However, for complex structures, such as those of deeply knotted proteins, the preservation of linear topology provides correct equilibrium results but only after long relaxation. In any case, to analyze folding pathways, knotting mechanisms and folding kinetics, the preservation of linear topology may be an unavoidable requirement.
Abstract. Gap-filling eddy covariance CO2 fluxes is challenging at dryland sites due to small CO2 fluxes. Here, four machine learning (ML) algorithms including artificial neural network (ANN), k-nearest neighbors (KNNs), random forest (RF), and support vector machine (SVM) are employed and evaluated for gap-filling CO2 fluxes over a semiarid sagebrush ecosystem with different lengths of artificial gaps. The ANN and RF algorithms outperform the KNN and SVM in filling gaps ranging from hours to days, with the RF being more time efficient than the ANN. Performances of the ANN and RF are largely degraded for extremely long gaps of 2 months. In addition, our results suggest that there is no need to fill the daytime and nighttime net ecosystem exchange (NEE) gaps separately when using the ANN and RF. With the ANN and RF, the gap-filling-induced uncertainties in the annual NEE at this site are estimated to be within 16 g C m−2, whereas the uncertainties by the KNN and SVM can be as large as 27 g C m−2. To better fill extremely long gaps of a few months, we test a two-layer gap-filling framework based on the RF. With this framework, the model performance is improved significantly, especially for the nighttime data. Therefore, this approach provides an alternative in filling extremely long gaps to characterize annual carbon budgets and interannual variability in dryland ecosystems.
Abstract. The cloud radiative kernel method is a popular approach to quantify cloud feedbacks and rapid cloud adjustments to increased CO2 concentrations and to partition contributions from changes in cloud amount, altitude, and optical depth. However, because this method relies on cloud property histograms derived from passive satellite sensors or produced by passive satellite simulators in models, changes in obscuration of lower-level clouds by upper-level clouds can cause apparent low-cloud feedbacks and adjustments, even in the absence of changes in lower-level cloud properties. Here, we provide a methodology for properly diagnosing the impact of changing obscuration on cloud feedbacks and adjustments and quantify these effects across climate models. Averaged globally and across global climate models, properly accounting for obscuration leads to weaker positive feedbacks from lower-level clouds and stronger positive feedbacks from upper-level clouds while simultaneously removing a mostly artificial anti-correlation between them. Given that the methodology for diagnosing cloud feedbacks and adjustments using cloud radiative kernels has evolved over several papers, and obscuration effects have only occasionally been considered in recent papers, this paper serves to establish recommended best practices and to provide a corresponding code base for community use.
Abstract. The mass conservation equation in the presence of boundary fluxes and chemical reactions from non-equilibrium thermodynamics is used to derive a modified dynamic energy budget (mDEB) model. Compared to the standard dynamic energy budget (sDEB) model (Kooijman, 2009), this modified formulation does not place the dilution effect in the mobilization kinetics of reserve biomass, and it maintains the partition principle for reserve mobilization dynamics for both linear and non-linear kinetics. Overall, the mDEB model shares most features with the sDEB model. However, for biological growth that requires multiple nutrients, the mDEB model is computationally much more efficient by not requiring numerical iterations for obtaining the specific growth rate. In an example of modeling the growth of Thalassiosira weissflogii in a nitrogen-limiting chemostat, the mDEB model was found to have almost the same accuracy as the sDEB model while requiring almost half of the computing time of the sDEB model. Since the sDEB model has been successfully applied in numerous studies, we believe that the mDEB model can help improve the modeling of biological growth and the associated ecosystem processes in various contexts.
Abstract. In situ cosmogenic 36Cl analysis by accelerator mass spectrometry (AMS) is routinely employed to date Quaternary surfaces and assess rates of landscape evolution. However, standard laboratory preparation procedures for 36Cl dating require the addition of large amounts of isotopically enriched chlorine spike solution; these solutions are expensive and increasingly difficult to acquire from commercial sources. In addition, the typical workflow for 36Cl dating involves measuring both 35Cl/37Cl and 36Cl/Cl concurrently on the high-energy (post-accelerator) end of the AMS system, but 35Cl/37Cl determinations using this technique can be complicated by isotope fractionation and system memory during measurement. The traditional workflow also does not provide 36Cl extraction laboratories with the data needed to calculate native Cl concentrations in advance of 36Cl/Cl measurements. In light of these concerns, we present an improved workflow for extracting and measuring chlorine in geologic materials. Our initial step is to characterize 35Cl/37Cl on sample aliquots of up to ∼1 g prepared in Ag(Cl, Br) matrices, which greatly reduces the amount of isotopically enriched spike solution required to measure native Cl content in each sample. To avoid potential issues with isotope fractionation through the accelerator, 35Cl/37Cl is measured on the low-energy, pre-accelerator end of the AMS line. Then, for 36Cl/Cl measurements, we extract Cl as AgCl or Ag(Cl, Br) in analytical batches with a consistent total Cl load across all samples; this step is intended to minimize source memory effects during 36Cl/Cl measurements and allows the preparation of AMS standards that are customized to match known Cl contents in the samples. To assess the efficacy of this extraction and measurement workflow, we compare chlorine isotope ratio measurements on seven geologic samples prepared using standard procedures and the updated workflow. Measurements of 35Cl/37Cl and 36Cl/Cl are consistent between the two workflows, and 35Cl/37Cl values measured using our methods have considerably higher precision than those measured following standard protocols. The chemical preparation and measurement workflow presented here (1) reduces the amount of isotopically enriched chlorine spike used per rock sample by up to 95 %; (2) identifies rocks with high native Cl concentrations, which may be lower priority for 36Cl surface exposure dating, at an early stage of analysis; and (3) allows laboratory users to maintain control over the total chlorine content within and across analytical batches. These methods can be incorporated into existing laboratory and AMS protocols for 36Cl analyses and will increase the accessibility of 36Cl dating for geologic applications.
Intercomparison standards produced from mineral samples exposed to the natural cosmic ray flux are routinely used for interlaboratory comparison and normalization of measurements of the cosmogenic noble gases 3 He and 21 Ne. This effort is facilitated by the availability of multiple standard materials with a wide range of cosmogenic nuclide concentrations. The “CoQtz-N” quartz standard, which was originally produced and distributed as an intercomparison standard for cosmogenic 10 Be and 26 Al, has a significantly lower cosmogenic nuclide concentration than other mineral standards used for cosmogenic noble gas analysis and is therefore potentially useful for assessing the linearity of interlaboratory offsets across a wide range of concentrations. This paper reports 21 Ne analysis of 13 aliquots of CoQtz-N, interspersed with 14 aliquots of the commonly used CRONUS-A quartz standard, in three analytical sessions on two noble gas mass spectrometer systems. The excess 21 Ne concentration in CoQtz-N, normalized to the accepted value of 320 × 10 6 atoms g −1 for CRONUS-A, is 13.87 ± 0.24 × 10 6 atoms g −1 . Alternatively, the ratio of excess 21 Ne concentrations in CoQtz-N and CRONUS-A is 0.04330 ± 0.00077.
Abstract. Quantifying the spatiotemporal dynamics in subsurface hydrological flows over a long time window usually employs a network of monitoring wells. However, such observations are often spatially sparse with potential temporal gaps due to poor quality or instrument failure. In this study, we explore the ability of recurrent neural networks to fill gaps in a spatially distributed time-series dataset. We use a well network that monitors the dynamic and heterogeneous hydrologic exchanges between the Columbia River and its adjacent groundwater aquifer at the U.S. Department of Energy's Hanford site. This 10-year-long dataset contains hourly temperature, specific conductance, and groundwater table elevation measurements from 42 wells with gaps of various lengths. We employ a long short-term memory (LSTM) model to capture the temporal variations in the observed system behaviors needed for gap filling. The performance of the LSTM-based gap-filling method was evaluated against a traditional autoregressive integrated moving average (ARIMA) method in terms of error statistics and accuracy in capturing the temporal patterns of river corridor wells with various dynamics signatures. Our study demonstrates that the ARIMA models yield better average error statistics, although they tend to have larger errors during time windows with abrupt changes or high-frequency (daily and subdaily) variations. The LSTM-based models excel in capturing both high-frequency and low-frequency (monthly and seasonal) dynamics. However, the inclusion of high-frequency fluctuations may also lead to overly dynamic predictions in time windows that lack such fluctuations. The LSTM can take advantage of the spatial information from neighboring wells to improve the gap-filling accuracy, especially for long gaps in system states that vary at subdaily scales. While LSTM models require substantial training data and have limited extrapolation power beyond the conditions represented in the training data, they afford great flexibility to account for the spatial correlations, temporal correlations, and nonlinearity in data without a priori assumptions. Thus, LSTMs provide effective alternatives to fill in data gaps in spatially distributed time-series observations characterized by multiple dominant frequencies of variability, which are essential for advancing our understanding of dynamic complex systems.
Abstract. We introduce a hierarchical Bayesian model for the spatial distribution of rainfall corresponding to an extreme event of a specified duration that could be used with regional hydrologic models to perform a regional hydrologic risk analysis. An extreme event is defined if any gaging site in the watershed experiences an annual maximum rainfall event and the spatial field of rainfall at all sites corresponding to that occurrence is modeled. Applications to data from New York City demonstrate the effectiveness of the model for providing spatial scenarios that could be used for simulating loadings into the urban drainage system. Insights as to the homogeneity in spatial rainfall and its implications for modeling are provided by considering partial pooling in the hierarchical Bayesian framework.
In this edition of Journal of Information Warfare, we explore a spectrum of concepts at the macro cyber scale. The papers in this special edition are organized into three main categories: Foundations, Tools & Technologies, and Policy & Strategy.
Abstract not provided.