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At least 127 records · Page 7

Peak selection matters in Principal Component Analysis: A case study of syntrophic microbes

In situ liquid time-of-flight secondary ion mass spectrometry (ToF-SIMS) is a powerful technique to address surface characterization of living biofilms in hydrated conditions. Principal component analysis (PCA) is an important tool to process a large amount of data and interpret the information from ToF-SIMS spectra. However, ToF-SIMS data analysis is still a great challenge in complicated bacterial biofilms, because many interference peaks from the medium may result in inaccurate interpretation of ToF-SIMS spectral analysis. In this study, two syntrophic Geobacter populations were investigated using in situ liquid ToF-SIMS to reveal the biofilm surface changes between them as due to direct interspecies electron transfer (DIET). Peak overlay is an effective strategy to eliminate the matrix effects in handling complex ToF-SIMS data and was used to accomplish peak selection in this work. Both all peak and selected peak spectral PCA showed a distinctive separation among different samples. However, medium samples occupied high scores values in all peak PCA compared with the selected peak PCA, suggesting a strong interference from the medium as the matrix effect. Amino acids and lipids contributed significantly in separating all samples in selected peak PCA, which indicated that surface membrane components such as pili and proteins are important in the co-cultured Geobacter community compared to controls such as the single population planktonic cells and biofilms, respectively. Additionally, the spectral PCA results of high intensity and high resolution data obtained from liquid ToF-SIMS were compared. Selected peak PCA obtained nice separation among samples in both data sets; however, the high resolution data showed better separation between co-culture planktonics and co-culture aggregates, confirming that the higher mass accuracy is useful in analysis of microbial samples. Furthermore, amino acid and water cluster as an important media for microbial metabolite were selected for a more focused selected peak PCA comparison. Consistent scores and loadings plots were achieved. In conclusion, we show that peak selection is critical for acquiring effective microbial information and interpretation of syntrophic Geobacter using spectral data from in situ liquid ToF-SIMS.

spectral overlay, peak selection, matrix effect, P↗

Intermolecular vibrational energy transfer enabled by microcavity strong light–matter coupling

Selective vibrational energy transfer between molecules in the liquid phase, a difficult process hampered by weak intermolecular forces, is achieved through polaritons formed by strong coupling between cavity photon modes and donor and acceptor molecules. Using pump-probe and two-dimensional infrared spectroscopy, we found that the excitation of the upper polariton, which is composed mostly of donors, can efficiently relax to the acceptors within ~5 picoseconds. The energy-transfer efficiency can be further enhanced by increasing the cavity lifetime, suggesting that the energy transfer is a polaritonic process. This vibrational energy-transfer pathway opens doors for applications in remote chemistry, sensing mechanisms, and vibrational polariton condensation.

Science & Technology - Other Topics↗

Soil Organic Matter Dynamics in the Critical Zone

Soil is the thin, vital layer of Earth’s surface that forms the foundation of the Critical Zone and sustains life. This chapter explores the intricate dynamics of soil organic matter within the critical zone, focusing on three key thematic areas: deep soil organic matter, wildfire organic matter interactions, and organic matter erosion. Soil organic matter, although a small fraction of soil mass, plays a crucial role in soil function and ecosystem stability. The complexity of soil organic matter arises from its diverse chemical composition and interactions with minerals, which influence its persistence in the environment. This chapter begins by examining deep soil organic matter, which constitutes a significant portion of global carbon storage. We discuss how deep soil organic matter, typically isolated from surface processes, may become vulnerable to decomposition and carbon release due to disturbances. Next, we explore the impacts of fire on soil organic matter, particularly the formation and stability of pyrolyzed organic matter. The decomposition of pyrolyzer organic matter is influenced by its chemical composition and the surrounding environmental conditions, with implications for carbon cycling and soil fertility in post-fire ecosystems. Finally, the chapter addresses the role of erosion in soil organic matter dynamics. Erosion, accelerated by human activities, redistributes soil organic matter across landscapes, affecting its turnover and the broader biogeochemical cycles. We consider how micro-topographic features and erosion processes interact to influence soil OM stability and carbon sequestration. By synthesizing recent advances in these areas, this chapter provides a comprehensive overview of the complex and dynamic nature of soil organic matter in the critical zone, highlighting its importance in understanding the critical zone in the face of environmental change.

Moreland, Kimber↗

Pushing the limits of detectability: mixed dark matter from strong gravitational lenses

One of the frontiers for advancing what is known about dark matter lies in using strong gravitational lenses to characterize the population of the smallest dark matter haloes. There is a large volume of information in strong gravitational lens images – the question we seek to answer is to what extent we can refine this information. To this end, we forecast the detectability of a mixed warm and cold dark matter scenario using the anomalous flux ratio method from strong gravitational lensed images. The halo mass function of the mixed dark matter scenario is suppressed relative to cold dark matter but still predicts numerous low-mass dark matter haloes relative to warm dark matter. Since the strong lensing signal receives a contribution from a range of dark matter halo masses and since the signal is sensitive to the specific configuration of dark matter haloes, not just the halo mass function, degeneracies between different forms of suppression in the halo mass function, relative to cold dark matter, can arise. Here, we find that, with a set of lenses with different configurations of the main deflector and hence different sensitivities to different mass ranges of the halo mass function, the different forms of suppression of the halo mass function between the warm dark matter model and the mixed dark matter model can be distinguished with 40 lenses with Bayesian odds of 30:1.

79 ASTRONOMY AND ASTROPHYSICS↗

Examining the possibility that normal nuclear matter is quarkyonic

The possibility that nuclear matter might be quarkyonic is considered. Quarkyonic matter is high baryon density matter that is confined but can be approximately thought of as a filled Fermi sea of quarks surrounded by a shell of nucleons. Here, nuclear matter is described by the IdylliQ sigma model for quarkyonic matter, generalizing the noninteracting IdylliQ model [Y. Fujimoto et al., Phys. Rev. Lett. 132, 112701 (2024)] to include interactions with a σ meson and a pion. When such interactions are included, we find that isospin-symmetric nuclear matter binds with acceptable values of the compressibility and other parameters for nuclear matter at saturation. The energy per nucleon and sound velocity of such matter is computed, and the isospin dependence is determined. Nuclear matter is formed at a density close to but slightly above the density at which quarkyonic matter forms. Quarkyonic matter predicts a strong depletion of nucleons in normal nuclear matter at low momentum. Finally, such a depletion for nucleon momenta k ≲ 120 MeV is shown to be consistent with electron scattering data.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Blowing in the dark matter wind

Abstract Interactions between dark matter and ordinary matter will transfer momentum, and therefore give rise to a force on ordinary matter due to the dark matter ‘wind.’ We show that this force can be maximal in a realistic model of dark matter, meaning that an order-1 fraction of the dark matter momentum incident on a target of ordinary matter is reflected. The model consists of light (m ϕ ≲ eV) scalar dark matter with an effective interaction$$ {\phi}^2\overline{\psi}\psi $$ ϕ 2 ψ ¯ ψ , whereψis an electron or nucleon field. If the coupling is repulsive and sufficiently strong, the fieldϕis excluded from ordinary matter, analogous to the Meissner effect for photons in a superconductor. We show that there is a large region of parameter space that is compatible with existing constraints, where the force is large enough to be detected by existing force probes, such as satellite tests of the equivalence principle and torsion balance experiments. However, shielding of the dark matter by ordinary matter prevents existing experiments from being sensitive to the dark matter force. We show that precise measurements of spacecraft trajectories proposed to test long distance modifications of gravity are sensitive to this force for a wide range of parameters.

Physics↗

Warming nuclear pasta with dark matter: kinetic and annihilation heating of neutron star crusts

Neutron stars serve as excellent next-generation thermal detectors of dark matter, heated by the scattering and annihilation of dark matter accelerated to relativistic speeds in their deep gravitational wells. However, the dynamics of neutron star cores are uncertain, making it difficult at present to unequivocally compute dark matter scattering in this region. On the other hand, the physics of an outer layer of the neutron star, the crust, is more robustly understood. We show that dark matter scattering solely with the low-density crust still kinetically heats neutron stars to infrared temperatures detectable by forthcoming telescopes. We find that for both spin-independent and spin-dependent scattering on nucleons, the crust-only cross section sensitivity is 10 -43 - 10 -41 cm 2 for dark matter masses of 100 MeV - 1 PeV, with the best sensitivity arising from dark matter scattering with a crust constituent called nuclear pasta (including gnocchi, spaghetti, and lasagna phases). For dark matter masses from 10 eV to 1 MeV, the sensitivity is 10 -39 - 10 -34 cm 2 , arising from exciting collective phonon modes in a neutron superfluid in the inner crust. Furthermore, for any s-wave or p-wave annihilating dark matter, we show that dark matter will efficiently annihilate by thermalizing just with the neutron star crust, regardless of whether the dark matter ever scatters with the neutron star core. This implies efficient annihilation in neutron stars for any electroweakly interacting dark matter with inelastic mass splittings of up to 200 MeV, including Higgsinos. We conclude that neutron star crusts play a key role in dark matter scattering and annihilation in neutron stars.

79 ASTRONOMY AND ASTROPHYSICS↗

Geometrical evidence for dark matter: X-ray constraints on the mass of the elliptical galaxy NGC 720

We describe (1) a new test for dark matter and alternate theories of gravitation based on the relative geometries of the X-ray and optical surface brightness distributions and an assumed form for the potential, of the optical light, (2) a technique to measure the shapes of the total gravitating matter and dark matter of an ellipsoidal system which is insensitive to the precise value of the temperature of the gas and to modest temperature gradients, and (3) a new method to determine the ratio of dark mass to stellar mass that is dependent on the functional forms for the visible star, gas and dark matter distributions, but independent of the distance to the galaxy or the gas temperature. We apply these techniques to X-ray data from the ROSAT Position Sensitive Proportional Counter (PSPC) of the optically flattened elliptical galaxy NGC 720; the optical isophotes have ellipticity epsilon approximately 0.40 extending out to approximately 120 sec. The X-ray isophotes are significantly elongated, epsilon = 0.20-0.30 for semimajor axis a approximately 100 sec. The major axes of the optical and X-ray isophotes are misaligned by approximately 30 deg +/- 15 deg. Spectral analysis of the X-ray data reveals no evidence of temperature gradients or anisotropies and demonstrates that a single-temperature plasma (T approximately 0.6 keV) having subsolar heavy element abundances and a two-temperature model having solar abundances describe the spectrum equally well. Considering only the relative geometries of the X-ray and optical surface brightness distributions and an assumed functional form for the potential of the optical light, we conclude that matter distributed like the optical light cannot produce the observed ellipticities of the X-ray isophotes, independent of the gas pressure, the gas temperature, and the value of the stellar mass; this comparison assumes a state of quasi-hydrostatic equilibrium so that the three-dimensional surfaces of the gas emissivity trace the three-dimensional isopotential surfaces -- we discuss the viability of this assumption for NGC 720. Milgrom's Modification of Newtonian Dynamics (MOND) cannot dispel this manifestation of dark matter. Hence, geometrical considerations require, without mention of pressure or temperature, the presence of an extended, massive dark matter halo in NGC 720. Employing essentially the technique of Buote & Canizares (1992; Buote 1992) we use the shape of the X-ray surface brightness to constrain the shape of the total gravitating matter. The total matter is modeled as either an oblate or prolate spheriod of constant shape and orientation having either a Ferrers (rho approximately r(exp -n)) or Hernquist density. Assuming the X-ray gas is in hydrostatic equilibrium, we construct a model X-ray gas distribution for various temperature profiles. We determine the ellipticity of the total gravitating matter to be epsilon approximately 0.50-0.70. Using the single-temperature model we estimate a total mass approximately (0.41-1.4) x 10(exp 12) h(sub 80) solar mass interior to the ellipsoid of semimajor axis 43.6 h(sub 80) kpc. Ferrers densities as steep as r(exp -3) do not fit the data, but the r(exp -2) and Hernquist models yield excellent fits. We estimate the mass distributions of the stars and the gas and fit the dark matter directly. For a given gas equation of state and functional forms for the visible stars, gas, and dark matter, these models yield a distance-independent and temperature-independent measurement of the ratio of dark mass to stellar mass M(sub DM)/M(sub stars). We estimate a minimum M(sub DM)/M(sub stars) greater than or equal to 4 which corresponds to a total mass slightly greater than that derived from the single-temperature models for distance D = 20h(sub 80) Mpc.

Buote, David A.↗

Focal Gray Matter Plasticity as a Function of Long Duration Head Down Tilted Bed Rest: Preliminary Results

Long duration spaceflight (i.e., 22 days or longer) has been associated with changes in sensorimotor systems, resulting in difficulties that astronauts experience with posture control, locomotion, and manual control. The microgravity environment is an important causal factor for spaceflight induced sensorimotor changes. Whether these sensorimotor changes are solely related to peripheral changes from reduced vestibular stimulation, body unloading, body fluid shifts or that they may be related to structural and functional brain changes is yet unknown. However, a recent study reported associations between microgravity and flattening of the posterior eye globe and protrusion of the optic nerve [1] possibly as the result of increased intracranial pressure due to microgravity induced bodily fluid shifts [3]. Moreover, elevated intracranial pressure has been related to white matter microstructural damage [2]. Thus, it is possible that spaceflight may affect brain structure and thereby cognitive functioning. Long duration head down tilt bed rest has been suggested as an exclusionary analog to study microgravity effects on the sensorimotor system [4]. Bed rest mimics microgravity in body unloading and bodily fluid shifts. In consideration of the health and performance of crewmembers both in- and post-flight, we are conducting a prospective longitudinal 70-day bed rest study as an analog to investigate the effects of microgravity on brain structure [5]. Here we present results of the first six subjects. Six subjects were assessed at 12 and 7 days before-, at 7, 30, and ~70 days in-, and at 8 and 12 days post 70 days of bed rest at the NASA bed rest facility in UTMB, Galveston, TX, USA. At each time point structural MRI scans (i.e., high resolution T1-weighted imaging and Diffusion Tensor Imaging (DTI)) were obtained using a 3T Siemens scanner. Focal changes over time in gray matter density were assessed using the voxel based morphometry 8 (VBM8) toolbox under SPM. Longitudinal processing in VBM8 includes linear registration of each scan to the mean of the subject and subsequently transforming all scans in to MNI space by applying the warp from the mean subject to MNI to the individual gray matter segmentations. Modulation was applied so that all images represented the volume of the original structure in native space. Voxel wise analysis was carried out on the gray matter images after smoothing, using a flexible factorial design with family wise error correction. Focal changes in white matter microstructural integrity were assessed using tract based spatial statistics (TBSS) as part of FMRIB software library (FSL). TBSS registers all DTI scans to standard space. It subsequently creates a study specific white matter skeleton of the major white matter tracts. For each subject, for each DTI metric (i.e. fractional anisotropy (FA), mean diffusivity (MD), axial diffusivity (AD), and radial diffusivity (RD)), the maximum value in a line perpendicular to the skeleton tract is projected to the skeleton. Non-parametric permutation based t-tests and ANOVA's were used for voxel-wise comparison of the skeletons. For both VBM and TBSS, comparison of pre bed rest measurements did not show significant differences. VBM analysis revealed decreased gray matter density in bilateral areas including the frontal medial cortex, the insular cortex and the caudate (see Figure) from 'pre to in bed rest'. Over the same time period, there was an increase in gray matter density in the cerebellum, occipital-, and parietal cortex, including the precuneus (see Figure). The majority of these changes did not recover from 'during to post bed rest'. TBSS analysis did not reveal significant changes in white matter microstructural integrity after correction for multiple comparisons. Uncorrected analyses (p<.015) revealed an increase in RD in the cerebellum and brainstem from pre bed rest to the first week in bed rest that did not recover post bed rest. Extended bed rest, which is an analog for microgravity, can result in gray matter changes and potentially in microstructural white matter changes in areas that are important for neuro motor behavior and cognition. These changes did not recover at two weeks post bed rest. Whether the effects of bed rest wear off at longer times post bed rest, and if they are associated with behavior are important questions that warrant further research.

Koppelmans, V.↗

Evaluating Lyman- α constraints for general dark-matter velocity distributions: Multiple scales and cautionary tales

One of the most important observational constraints on possible models of dark-matter physics exploits the Lyman-α absorption spectrum associated with photons traversing the intergalactic medium. Because these data allow us to probe the linear matter power spectrum with great accuracy down to relatively small distance scales, finding ways of accurately evaluating such Lyman-α constraints across large classes of candidate models of dark-matter physics is of paramount importance. While such Lyman-α constraints have been evaluated for dark-matter models that give rise to relatively simple dark-matter velocity distributions, more complex models—particularly those whose dark-matter velocity distributions stretch across multiple scales—have recently been receiving increasing attention. In this paper, we undertake a study of the Lyman-α constraints associated with general dark-matter velocity distributions. Although such Lyman-α constraints are difficult to evaluate in principle, in practice there currently exist two classes of methods in the literature through which such constraints can be recast into forms which are easier to evaluate and which therefore allow a more rapid determination of whether a given dark-matter model is ruled in or out. Accordingly, we utilize both of these recasts in order to determine the Lyman-α bounds on different classes of dark-matter velocity distributions. Here we also develop a general method by which the results of these different recasts can be compared. For relatively simple dark-matter velocity distributions, we demonstrate that these two classes of recasts tend to align and give similar results. However, we find that the situation is far more complex for distributions involving multiple velocity scales: while these two classes of recasts continue to yield similar results within certain regions of parameter space, they nevertheless yield dramatically different results within precisely those regions of parameter space which are likely to be phenomenologically relevant. This, then, serves as a cautionary tale regarding the use of such recasts for complex dark-matter velocity distributions.

79 ASTRONOMY AND ASTROPHYSICS↗

Evidence for the existence and ecological relevance of fast-cycling mineral-associated organic matter

Longstanding theories and models classify mineral-associated organic matter as the large ( ~ 60%) but slow-cycling and persistent portion of soil organic matter. Strong physico-chemical interactions and diffusion limitations restrict the turnover of mineral-associated organic matter, allowing carbon and nitrogen bound therein to persist in soil for as long as centuries to millennia. However, mineral-associated organic matter is a chemically and functionally diverse pool with a substantial portion cycling at relatively fast (i.e., minutes to years) timescales. Despite a growing body of evidence for the heterogenous and multi-pool nature of mineral-associated organic matter, we lack consensus on how to conceptualize and directly quantify fast-cycling mineral-associated organic matter and its ecological significance. We demonstrate that the dynamic qualities of fast-cycling mineral-associated organic matter vary based on 1) the chemistry of the mineral particles and organic matter, 2) the complex set of interactions between organic matter and the mineral matrix, and 3) the presence and strength of destabilizing forces that lead to decomposition or loss of mineral-associated organic matter (i.e., plant-microbe interactions, agricultural intensification, and climate change). Finally, we discuss potential implications and research opportunities for how we measure, manage, and model the dynamic subfraction of this otherwise persistent pool of soil organic matter.

Biological and medical sciences↗

Got plenty of nothing: cosmic voids as a probe of particle dark matter

The search for a particle dark matter signal in terms of radiation produced by dark matter annihilation or decay has to cope with the extreme faintness of the predicted signal and the presence of masking astrophysical backgrounds. It has been shown that using the correlated information between the dark matter distribution in the Universe with the fluctuations of the cosmic radiation fields has the potential to allow setting apart a pure dark matter signal from astrophysical emissions, since spatial fluctuations in the radiation field due to astrophysical sources and dark matter emission have different features. The cross-correlation technique has been proposed and adopted for dark matter studies by looking at dark matter halos (overdensities). Here in this paper we extend the technique by focusing on the information on dark matter distribution offered by cosmic voids, and by looking specifically at the gamma-ray dark matter emission: we show that, while being underdense and therefore producing a reduced emission as compared to halos, nevertheless in voids the relative size of the cross-correlation signal due to decaying dark matter vs. astrophysical sources is significantly more favourable, producing signal-to-background ratios S/B (even significantly) larger than 1 for decay lifetimes up to 2 × 10 30 s. This is at variance with the case of halos, where S/B is typically (even much) smaller than 1. We show that forthcoming galaxy surveys such as Euclid combined with future generation gamma-ray detectors with improved specifications have the ability to provide a hint of such a signal with a predicted significance up to 5.7σ for galaxies and 1.6σ for the cosmic shear. The bound on the dark matter lifetime attainable exploiting voids is predicted to improve on current bounds in a mass range for the WIMP of 25 ÷ 900 GeV.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Mixed warm dark matter constraints using Milky Way satellite galaxy counts

Warm dark matter has been strongly constrained in recent years as the sole component of dark matter. However, a less-explored alternative is that dark matter consists of a mixture of warm and cold dark matter (MWDM). In this work, we use observations of Milky Way satellite galaxies to constrain MWDM scenarios where the formation of small-scale structure is suppressed either by generic thermal relic warm dark matter or a sterile neutrino produced through the Shi-Fuller mechanism. To achieve this, we model satellite galaxies by combining numerical simulations with semianalytical models for the subhalo population, and use a galaxy-halo connection model to match galaxies onto dark matter subhalos. By comparing the number of satellites predicted by MWDM models to the observed satellite population from the Dark Energy Survey and Pan-STARRS1, we constrain the fraction of warm dark matter, f WDM , as a function of its mass, m WDM . We exclude dark matter being composed entirely of thermal relic warm dark matter with m WDM ≤ 6.6 keV at a posterior ratio of 10 ∶ 1 , consistent with previous works. However, we find that warm dark matter with smaller mass is allowed when mixed with cold dark matter, and that the f WDM constraints strengthen with decreasing m WDM until they plateau at f WDM ≲ 0.45 for m WDM ≲ 1.5 keV . Likewise, in the case of a sterile neutrino with mass of 7 keV produced through the Shi-Fuller mechanism, we exclude a fraction of f ν s ≲ 0.45 , independent of mixing angle. Our results extend constraints on MWDM to a region of parameter space that has been relatively unconstrained with previous analysis.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Searches for Sub-GeV Dark Matter with NOvA and LDMX and Performance Studies of the Cosmic-Ray Veto for Mu2e

The constituents of dark matter are still unknown, and the viable possibilities span a very large mass range. Specific scenarios for the origin of dark matter sharpen the focus to within about an MeV to 100 TeV. Most of the stable constituents of known matter have masses in the lower range, and a thermal origin for dark matter works in a simple and predictive manner in this mass range as well. Non-gravitational couplings of dark matter to Standard Model particles would make it possible to produce dark matter at accelerators. Through 120 GeV proton-nucleus collisions, NOvA is effectively a beam dump experiment for producing and detecting dark matter. This thesis presents a search for dark matter – electron scattering in the NOvA near detector from sub-GeV dark matter produced at the target. A future search for sub-GeV dark matter with the Light Dark Matter eXperiment (LDMX) is discussed, along with a study of LDMX's expected sensitivity to visibly decaying dark photons. Additionally, performance studies of the Mu2e cosmic ray veto (CRV) are presented. A calibration procedure for the CRV counters is discussed, along with tests of the efficiency, position resolution, and light yield decline of the CRV counters.

Horoho, Tyler Gregory [Virginia U.] (ORCID:0000000↗