A MACHINE LEARNING FRAMEWORK FOR ALLEVIATING BOTTLENECKS OF PROJECTION-BASED REDUCED ORDER MODELS.
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The E1039/SpinQuest experiment at Fermi National Accelerator Laboratory uses a 120~GeV proton beam from the Main Injector incident on transversely polarized proton and deuteron targets, using $NH_3$ and $ND_3$, respectively. In addition to measuring the Sivers asymmetry in Drell--Yan $pp$ and $pd$ scattering from sea quarks, SpinQuest will study transverse-spin effects, particularly the transverse single-spin asymmetry (TSSA) in $J/\psi$ production. The angular distributions from the $J/\psi$ decay could play an important role in understanding the gluon contribution to the proton spin structure. However, before extracting these angular distributions, it is necessary to isolate signal events originating from the target from events produced by other sources and from the combinatorial background. To effectively and accurately classify the target events, it is important to ensure that the simulated events are properly tuned to the experimental physics channels. We have introduced an iterative technique to match simulated and experimental events and to classify the physics channels using deep neural networks and a generative model based on normalizing flows.
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Neural networks and computer vision techniques are used to rapidly predict solid oxide fuel and electrolysis cell performance from low-resolution tomographic data.
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During the past five years, deep-learning algorithms have enabled ground-breaking progress towards the prediction of tertiary structure from a protein sequence. Very recently, we developed SAdLSA, a new computational algorithm for protein sequence comparison via deep-learning of protein structural alignments. SAdLSA shows significant improvement over established sequence alignment methods. In this contribution, we show that SAdLSA provides a general machine-learning framework for structurally characterizing protein sequences. By aligning a protein sequence against itself, SAdLSA generates a fold distogram for the input sequence, including challenging cases whose structural folds were not present in the training set. About 70% of the predicted distograms are statistically significant. Although at present the accuracy of the intra-sequence distogram predicted by SAdLSA self-alignment is not as good as deep-learning algorithms specifically trained for distogram prediction, it is remarkable that the prediction of single protein structures is encoded by an algorithm that learns ensembles of pairwise structural comparisons, without being explicitly trained to recognize individual structural folds. As such, SAdLSA can not only predict protein folds for individual sequences, but also detects subtle, yet significant, structural relationships between multiple protein sequences using the same deep-learning neural network. The former reduces to a special case in this general framework for protein sequence annotation.
We present a machine learning framework (GP-NODE) for Bayesian model discovery from partial, noisy and irregular observations of nonlinear dynamical systems. The proposed method takes advantage of differentiable programming to propagate gradient information through ordinary differential equation solvers and perform Bayesian inference with respect to unknown model parameters using Hamiltonian Monte Carlo sampling and Gaussian Process priors over the observed system states. This allows us to exploit temporal correlations in the observed data, and efficiently infer posterior distributions over plausible models with quantified uncertainty. The use of the Finnish Horseshoe as a sparsity-promoting prior for free model parameters also enables the discovery of parsimonious representations for the latent dynamics. A series of numerical studies is presented to demonstrate the effectiveness of the proposed GP-NODE method including predator–prey systems, systems biology and a 50-dimensional human motion dynamical system. This article is part of the theme issue ‘Data-driven prediction in dynamical systems’.
Grafting polymer chains on the surfaces of nanoparticles is a well-known route to control their self-assembly and distribution in a polymer matrix. A wide variety of self-assembled structures are achieved by changing the grafting patterns on the surface of an individual nanoparticle. However, an accurate estimation of the effective potential of mean force between a pair of grafted nanoparticles that determines their assembly and distribution in a polymer matrix is an outstanding challenge in nanoscience. We address this problem via deep learning. As a proof of concept, here we report a deep learning framework that learns the interaction between a pair of single-chain grafted spherical nanoparticles from their molecular dynamics trajectory. Subsequently, we carry out the deep learning potential of mean force-based molecular simulation that predicts the self-assembly of a large number of single-chain grafted nanoparticles into various anisotropic superstructures, including percolating networks and bilayers depending on the nanoparticle concentration in three-dimensions. The deep learning potential of mean force-predicted self-assembled superstructures are consistent with the actual superstructures of single-chain polymer grafted spherical nanoparticles. This deep learning framework is very generic and extensible to more complex systems including multiple-chain grafted nanoparticles. Finally, we expect that this deep learning approach will accelerate the characterization and prediction of the self-assembly and phase behaviour of polymer-grafted and unfunctionalized nanoparticles in free space or a polymer matrix.
The use of machine learning (ML)-based surrogate models is a promising technique to significantly accelerate simulation-driven design optimization of internal combustion (IC) engines, due to the high computational cost of running computational fluid dynamics (CFD) simulations. However, training the ML models requires hyperparameter selection, which is often done using trial-and-error and domain expertise. Another challenge is that the data required to train these models are often unknown a priori. In this work, we present an automated hyperparameter selection technique coupled with an active learning approach to address these challenges. The technique presented in this study involves the use of a Bayesian approach to optimize the hyperparameters of the base learners that make up a super learner model. In addition to performing hyperparameter optimization (HPO), an active learning approach is employed, where the process of data generation using simulations, ML training, and surrogate optimization is performed repeatedly to refine the solution in the vicinity of the predicted optimum. The proposed approach is applied to the optimization of a compression ignition engine with control parameters relating to fuel injection, in-cylinder flow, and thermodynamic conditions. It is demonstrated that by automatically selecting the best values of the hyperparameters, a 1.6% improvement in merit value is obtained, compared to an improvement of 1.0% with default hyperparameters. Overall, the framework introduced in this study reduces the need for technical expertise in training ML models for optimization while also reducing the number of simulations needed for performing surrogate-based design optimization.
As people spend up to 87% of their time indoors, intelligent Heating, Ventilation, and Air Conditioning (HVAC) systems in buildings are essential for maintaining occupant comfort and reducing energy consumption. These HVAC systems in smart buildings rely 'on real-time sensor readings, which in practice often suffer from various faults and could also be vulnerable to malicious attacks. Such faulty sensor inputs may lead to the violation of indoor environment requirements (e.g., temperature, humidity, etc.) and the increase of energy consumption. While many model-based approaches have been proposed in the literature for building HVAC control, it is costly to develop accurate physical models for ensuring their performance and even more challenging to address the impact of sensor faults. In this work, we present a novel learning-based framework for sensor fault-tolerant HVAC control, which includes three deep learning based components for 1) generating temperature proposals with the consideration of possible sensor faults, 2) selecting one of the proposals based on the assessment of their accuracy, and 3) applying reinforcement learning with the selected temperature proposal. Moreover, to address the challenge of training data insufficiency in building-related tasks, we propose a model-assisted learning method leveraging an abstract model of building physical dynamics. Through extensive experiments, we demonstrate that the proposed fault-tolerant HVAC control framework can significantly reduce building temperature violations under a variety of sensor fault patterns while maintaining energy efficiency.
BUTTER ( An Empirical Deep Learning Experimental Framework) is a system with which empirical deep learning experiments can be conducted and their results, including training and model performance characteristics, can be accumulated for further analysis.