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At least 127 records · Page 7

Elastic depths for detecting shape anomalies in functional data

This this paper, we propose a new family of depth measures called the elastic depths that can be used to greatly improve shape anomaly detection in functional data. Shape anomalies are functions that have considerably different geometric forms or features from the rest of the data. Identifying them is generally more difficult than identifying magnitude anomalies because shape anomalies are often not distinguishable from the bulk of the data with visualization methods. The proposed elastic depths use the recently developed elastic distances to directly measure the centrality of functions in the amplitude and phase spaces. Measuring shape outlyingness in these spaces provides a rigorous quantification of shape which, in turn, gives the elastic depths a strong theoretical and practical advantage over other methods in detecting shape anomalies. A simple boxplot and thresholding method are introduced to identify shape anomalies using the elastic depths. We assess the elastic depth's detection skill on simulated shape outlier scenarios and compare them against popular shape anomaly detectors. Finally, bond yields, image outlines, and hurricane trajectories are used to demonstrate our method's applicability to functional data observed on three different manifolds.

97 MATHEMATICS AND COMPUTING↗

Trimming and Decontamination of Metagenomic Data can Significantly Impact Assembly and Binning Metrics, Phylogenomic and Functional Analysis

Background: Investigators using metagenomic sequencing to study microbiomes often trim and decontaminate reads without knowing their effect on downstream analyses. Objective: This study was designed to evaluate the impacts JGI trimming and decontamination procedures have on assembly and binning metrics, placement of MAGs into species trees, and functional profiles of MAGs extracted from complex rhizosphere metagenomes, as well as how more aggressive trimming impacts these binning metrics. Methods: Twenty-three Miscanthus x giganteus rhizosphere metagenomes were subjected to different combinations and thresholds of force, kmer, and quality trimming and decontamination using BBDuk. Reads were assembled and binned in KBase. Phylogenomic and statistical analyses were applied to evaluate the effects of trimming and decontamination on downstream analyses. Results: We found that JGI trimmed and decontaminated reads had significant impacts on assembly and binning metrics compared to raw reads, including significantly higher total contig counts, more contigs greater than 10k bp in length, and larger total lengths of raw assemblies compared to QC assemblies, and 2.0% lower average contamination of QC MAGs compared to raw MAGs. We also found that differences in the placement of MAGs in species trees increased with decreasing completeness and contamination thresholds. Furthermore, aggressive trimming (Q20) was found to significantly reduce MAG counts. Conclusion: Trimming and decontamination of metagenomics reads prior to assembly can change an investigator’s answer to the questions, “Who is there and what are they doing?” However, mild trimming and decontamination of metagenomic reads with high-quality scores are recommended for removing sample processing and sequencing artifacts.

Whitham, Jason M.↗

Intraseasonal oscillations in the global atmosphere. I - Northern Hemisphere and tropics

Oscillatory modes in the Northern Hemisphere and in the tropics were examined systematically. The 700 mb heights were used to analyze extratropical oscillations, and the outgoing longwave radiation to study tropical oscillations in convection. All datasets were band-pass filtered to focus on the intraseasonal (IS) band of 10-120 days. Leading spatial patterns of variability were obtained by applying empirical orthogonal function analysis to these IS data. The leading principal components were subjected to singular spectrum analysis. In the Northern Hemisphere, there are two important modes of oscillation with periods near 48 and 23 days, respectively. The 48-day mode is the most important of the two. It has both traveling and standing components, and is dominated by a zonal wavenumber two. The 23-day mode has the spatial structure and propagation properties described by Branstator and by Kushnir (1987). In the tropics, the 40-50 day oscillation documented by Madden and Julian (1972), Weickmann (1983), Lau, and their colleagues, dominates the Indian and Pacific oceans from 60 deg E to the date line. From 170 deg W to 90 deg W, however, a 24-28 day oscillation is equally strong. The extratropical modes are often independent of, and sometimes lead, the tropical modes.

Ghil, Michael↗

The NASA JSC Hypervelocity Impact Test Facility (HIT-F)

The NASA Johnson Space Center Hypervelocity Impact Test Facility was created in 1980 to study the hypervelocity impact characteristics of composite materials. The facility consists of the Hypervelocity Impact Laboratory (HIRL) and the Hypervelocity Analysis Laboratory (HAL). The HIRL supports three different-size light-gas gun ranges which provide the capability of launching particle sizes from 100 micron spheres to 12.7 mm cylinders. The HAL performs three functions: (1) the analysis of data collected from shots in the HIRL, (2) numerical and analytical modeling to predict impact response beyond test conditions, and (3) risk and damage assessments for spacecraft exposed to the meteoroid and orbital debris environments.

Crews, Jeanne L.↗

Analysis of Suomi - NPP VIIRS Vignetting Functions Based on Yaw Maneuver Data

The Suomi NPP Visible Infrared Imager Radiometer Suite (VIIRS) reflective bands are calibrated on-orbit via reference to regular solar observations through a solar attenuation screen (SAS) and diffusely reflected off a Spectralon (Registered Trademark) panel. The degradation of the Spectralon panel BRDF due to UV exposure is tracked via a ratioing radiometer (SDSM) which compares near simultaneous observations of the panel with direct observations of the sun (through a separate attenuation screen). On-orbit, the vignetting functions of both attenuation screens are most easily measured when the satellite performs a series of yaw maneuvers over a short period of time (thereby covering the yearly angular variation of solar observations in a couple of days). Because the SAS is fixed, only the product of the screen transmission and the panel BRDF was measured. Moreover, this product was measured by both VIIRS detectors as well as the SDSM detectors (albeit at different reflectance angles off the Spectralon panel). The SDSM screen is also fixed; in this case, the screen transmission was measured directly. Corrections for instrument drift and degradation, solar geometry, and spectral effects were taken into consideration. The resulting vignetting functions were then compared to the pre-launch measurements as well as models based on screen geometry.

Xiong, Xiaoxiong↗

A Robotics Enabled Eddy Current Testing System for Autonomous Inspection of Heat Exchanger Tubes

The objective of the project is to develop a robotics enabled eddy current testing system (REECTS) in automatic probe deployment, inspection, and data acquisition and analysis. The main functions of the REECTS are to: 1) identify geometry and locations of heat exchange tubes with assistance of an imaging recognition system; 2) precisely control the position and motion speed of ECT probes by an adaptive control system; 3) facilitate data analysis and real-time decision making for autonomous inspection assisted by machine learning algorithms.

20 FOSSIL-FUELED POWER PLANTS↗

Subcentimeter-size particle distribution functions in planetary rings from Voyager radio and photopolarimeter occultation data

Analysis of measurements of the scattered and direct components of Voyager 1 radio occultation signals at 3.5 and 13 cm wavelengths yield estimates of the distribution functions of supracentimeter-size particles and thickness of relatively broad regions in Saturn's rings. If mearurements of signal amplitude at a shorter wavelength are combined with the previously analyzed data, the shape of the distribution functions characterizing the smaller particles can be constrained. If size distributions of arbitrary form were considered, many solutions are found that are consistent with the three available observations of signal amplitude. The best-fit power law was calculated to the three observations at three wavelengths for several of the embedded Saturn ringlets. Mie scattering theory predicts that the measured phase of the radio occultation signal is highly sensitive to particles ranging from 0.1 to 1.0 wavelengths in size, thus additional constraints on the subcentimeter-size distribution functions for both the Saturn and Uranus rings can in principle be derived from radio phase measurements.

Zebker, Howard A.↗

Guiding the choice of informatics software and tools for lipidomics research applications

Progress in mass spectrometry lipidomics has led to a rapid proliferation of studies across biology and biomedicine. These generate extremely large raw datasets requiring sophisticated solutions to support automated data processing. To address this, numerous software tools have been developed and tailored for specific tasks. However, for researchers, deciding which approach best suits their application relies on ad hoc testing, which is inefficient and time consuming. Here we first review the data processing pipeline, summarizing the scope of available tools. Next, to support researchers, LIPID MAPS provides an interactive online portal listing open-access tools with a graphical user interface. This guides users towards appropriate solutions within major areas in data processing, including (1) lipid-oriented databases, (2) mass spectrometry data repositories, (3) analysis of targeted lipidomics datasets, (4) lipid identification and (5) quantification from untargeted lipidomics datasets, (6) statistical analysis and visualization, and (7) data integration solutions. Detailed descriptions of functions and requirements are provided to guide customized data analysis workflows.

59 BASIC BIOLOGICAL SCIENCES↗

Compiler analysis for irregular problems in FORTRAN D

We developed a dataflow framework which provides a basis for rigorously defining strategies to make use of runtime preprocessing methods for distributed memory multiprocessors. In many programs, several loops access the same off-processor memory locations. Our runtime support gives us a mechanism for tracking and reusing copies of off-processor data. A key aspect of our compiler analysis strategy is to determine when it is safe to reuse copies of off-processor data. Another crucial function of the compiler analysis is to identify situations which allow runtime preprocessing overheads to be amortized. This dataflow analysis will make it possible to effectively use the results of interprocedural analysis in our efforts to reduce interprocessor communication and the need for runtime preprocessing.

Vonhanxleden, Reinhard↗

Digital image analysis of Landsat data

The paper defines some basic processing functions than can be performed digitally, discusses a variety of computer peripherals including hard copy output devices and television terminals, compares the characteristics of stand-alone image analysis systems, and briefly describes the important features of image processing and geographic information systems software. Several examples are discussed to demonstrate the efficient use of computers through implementation of hard copy image recorders and television display terminals. The commercially available stand-alone image analysis systems include a computer, appropriate peripherals, and sufficient software to perform analysis without other computational support.

Alford, W. L.↗

Interpolation algorithms and image data artifacts

Interpolation, or resampling coefficients, which are generated from low pass filter Fourier transforms yield more accurate resampled values than those obtained using cubic spline techniques. This is due to the utilization of six data points rather than four as currently used in cubic spline analysis. After resampling functions are applied to image data, artifacts which are similar to ringing may become pronounced. These effects are often present in the original data and the interpolation merely enhances them.

Forman, M. L.↗

DATAMAP upgrade version 4.0

The changes made on the data analysis and management program DATAMAP (Data from Aeromechanics Test and Analytics - Management and Analysis Package) are detailed. These changes are made to Version 3.07 (released February, 1981) and are called Version 4.0. Version 4.0 improvements were performed by Sterling Software under contract to NASA Ames Research Center. The increased capabilities instituted in this version include the breakout of the source code into modules for ease of modification, addition of a more accurate curve fit routine, ability to handle higher frequency data, additional data analysis features, and improvements in the functionality of existing features. These modification will allow DATAMAP to be used on more data sets and will make future modifications and additions easier to implement.

Watts, Michael E.↗

Rational functional representation of flap noise spectra including correction for reflection effects

A rational function is presented for the acoustic spectra generated by deflection of engine exhaust jets for under-the-wing and over-the-wing versions of externally blown flaps. The functional representation is intended to provide a means for compact storage of data and for data analysis. The expressions are based on Fourier transform functions for the Strouhal normalized pressure spectral density, and on a correction for reflection effects based on Thomas' (1969) N-independent-source model extended by use of a reflected ray transfer function. Curve fit comparisons are presented for blown-flap data taken from turbofan engine tests and from large-scale cold-flow model tests. Application of the rational function to scrubbing noise theory is also indicated.

Miles, J. H.↗

Rational function representation of flap noise spectra including correction for reflection effects

A rational function is presented for the acoustic spectra generated by deflection of engine exhaust jets for under-the-wing and over-the-wing versions of externally blown flaps. The functional representation is intended to provide a means for compact storage of data and for data analysis. The expressions are based on Fourier transform functions for the Strouhal normalized pressure spectral density, and on a correction for reflection effects based on the N-independent-source model of P. Thomas extended by use of a reflected ray transfer function. Curve fit comparisons are presented for blown flap data taken from turbofan engine tests and from large scale cold-flow model tests. Application of the rational function to scrubbing noise theory is also indicated.

Miles, J. H.↗

Automated data acquisition technology development:Automated modeling and control development

This report documents the completion of, and improvements made to, the software developed for automated data acquisition and automated modeling and control development on the Texas Micro rackmounted PC's. This research was initiated because a need was identified by the Metal Processing Branch of NASA Marshall Space Flight Center for a mobile data acquisition and data analysis system, customized for welding measurement and calibration. Several hardware configurations were evaluated and a PC based system was chosen. The Welding Measurement System (WMS), is a dedicated instrument strickly for use of data acquisition and data analysis. In addition to the data acquisition functions described in this thesis, WMS also supports many functions associated with process control. The hardware and software requirements for an automated acquisition system for welding process parameters, welding equipment checkout, and welding process modeling were determined in 1992. From these recommendations, NASA purchased the necessary hardware and software. The new welding acquisition system is designed to collect welding parameter data and perform analysis to determine the voltage versus current arc-length relationship for VPPA welding. Once the results of this analysis are obtained, they can then be used to develop a RAIL function to control welding startup and shutdown without torch crashing.

Romine, Peter L.↗