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At least 127 records · Page 7

TriGORank: A Gene Ontology Enriched Learning-to-Rank Framework for Trigenic Fitness Prediction

Machine learning (ML) has been gaining interest in the metabolic engineering community as a means to automate prediction tasks. In this work, we introduce and study the task of using ML to recommend high-fitness triplet mutants as candidates for wet-lab experiments. We first utilize individual fitness and digenic fitness scores as features and train machine learning models that produce a ranked list, from high to low fitness scores, for triplet gene mutants of S. cerevisiae. Then, we incorporate prior metabolic knowledge from an existing gene ontology, by designing a novel graph representation and deducing features that can capture gene similarity and gene interactions. Lastly, experimental results show that our proposed gene ontology enriched model, termed TriGORank, improves both performance and explainability.

Labhishetty, Sahiti↗

SCEC/USGS Community Stress-Drop Validation Study: How Spectral Fitting Approaches Influence Measured Source Parameters

Spectral source parameters used to estimate an earthquake’s stress drop (⁠Δσ⁠) can vary significantly across measurement approaches. The Statewide California Earthquake Center/U.S. Geological Survey Community Stress‐Drop Validation Study was initiated to compare source parameter estimates, focusing initially on a dataset from the 2019 Ridgecrest earthquake sequence. As part of that validation effort, here we focus on one potential source of uncertainty: whether spectral fitting approaches alone, applied to a common set of spectra from the 2019 Ridgecrest sequence result in different source parameter estimates. By using a common set of benchmark spectra analyzed across a consistent frequency band of 1–40 Hz, we eliminate many sources of variability. A subgroup of validation study participants volunteered to estimate the low‐frequency displacement (⁠Ω 0 ⁠) and corner frequency (⁠ƒ c ⁠) by fitting a smooth function to benchmark displacement spectra. Participants used linear‐ or log‐sampled spectra, assumed a Brune or Boatwright spectral model, and applied different misfit criteria. We compare 17 approaches used to estimate ⁠Ω 0 ⁠, ƒ c ⁠, and Δσ for 54 earthquake spectra. Our results reveal that 35% of events have Δσ estimates within a factor of two, whereas others exhibit variations exceeding an order of magnitude. The variability in and can largely be attributed to whether a spectrum is consistent with the smooth function of an idealized simple crack model. The trade‐off between Ω 0 and ƒ c may be more pronounced when using linearly sampled spectra, as higher frequency spectral bumps control the fits. As expected, methods that assumed a Boatwright model tended to have lower Ω 0 and somewhat higher ƒ c compared to those assuming a Brune model, although resulting Δσ estimates are similar. Finally, when compared to the overall validation study results, the fitting approach alone may account for between 5% and 90% (25% on average) of the total variability in spectral Δσ⁠.

58 GEOSCIENCES↗

Analysis of pressure test results of tube fittings for the potential application in cryo systems for helium leak rate reduction

Due to the nature of Helium, it is notoriously difficult to maintain a closed system without experiencing helium inventory loss through leakage in large tubing and piping runs. There are two standard fitting options readily available for piping and tubing assemblies, welded fittings or Swagelok ® . Welding is the best option for leak rate reduction, but more costly than Swagelok ® . A new style of fitting has come to the attention of BNL C-AD Cryo group, and a pressure test and leak rate analysis were performed to evaluate the viability of incorporating this new style fitting into current engineering design of warm helium tubing runs for the purpose of leak rate reduction.

43 PARTICLE ACCELERATORS↗

Fitness for Service Assessment of a Corroded Heat Exchanger

Fermilab s Main Injector Accelerator has used shell & tube heat exchangers to cool various beamline components since its construction in the late 1990s. Many of the heat exchangers still around today are original to the machine. Untreated pond water has been used to exchange heat with the Low Conductivity Water. Throughout the lifetime of Fermilab s heat exchangers, they have undergone significant material degradation in the carbon steel end channels due to corrosion. Wall thickness measurements (per API 510) of each heat exchanger were used to generate a 3D model of the corroded surfaces. In order to continue their safe and reliable operation, ASME FFS-1/API 579 (Fitness-For-Service) was implemented to address their integrity. The assessments consisted of finite element analysis techniques outlined in ASME Section VIII Div. 2 (design by analysis methods for pressure vessels), in accordance with the requirements of ASME FFS-1 Part 4: General Metal Loss, Part 5: Local Metal Loss, and Part 9: Crack Like Flaws. The assessments concluded that each heat exchanger is coined Fit For Service . The Fitness-For-Service standard offers a unique opportunity to facilities and institutions within the DOE National Lab complex to properly and safely assess the integrity of aging equipment necessary to conduct science and research. This poster demonstrates the assessment process and techniques used to determine the heat exchangers are fit for service.

Humenik, Alex [Fermilab]↗

PISCES two-detector covariance matrix fit for the NOvA Experiment

NOvA is a long-baseline neutrino oscillation experiment with two functionally identical detectors: a Near Detector (ND) at Fermilab, placed 1 km from the neutrino source, and a Far Detector (FD) located 810 km away from the ND in Minnesota. NOvA's primary physics goals are the precise measurements of neutrino oscillation parameters $\theta_{23}$ and $\Delta m^2_{32}$ , determine the neutrino mass ordering, and constrain the value of $\delta_{CP}$, via the study of muon neutrino to electron neutrino oscillation. In the standard NOvA three-flavor analysis, oscillation parameters are extracted using an extrapolation technique in which the ND data constrain the FD prediction through a ratio method. While this allows for systematic uncertainties sharing the same effects in both detectors to cancel, it remains an FD-only fit and does not fully leverage the constraining power of the high-statistics ND. This analysis proposes a simultaneous ND+FD fit using the PISCES method. PISCES (Parameter Inference with Systematic Covariance and Exact Statistics) is a framework designed to support complex configurations such as a joint ND+FD fit. This allows PISCES to take full advantage of the ND data to directly constrain systematic uncertainties across all samples. In PISCES, systematic uncertainties are encoded in a fractional covariance matrix, and statistical uncertainties are handled with a Poisson likelihood, making the approach well suited for low-statistics samples. For interpretability, we further use a Newton–Raphson + PCA method to recover per-systematic pulls from the covariance formulation. This poster presents the full PISCES joint ND+FD fit for the NOvA three-flavor analysis, describes its implementation and evaluates its performance through extensive robustness tests and fake data studies. It also provides a comparison between the PISCES joint ND+FD results and the standard NOvA extrapolation method.

Rajaoalisoa, Miriama [Cincinnati U.] (ORCID:000000↗

Curve fits of predicted inviscid stagnation-point radiative heating rates, cooling factors, and shock standoff distances for hyperbolic earth entry

Curve-fit formulas are presented for the stagnation-point radiative heating rate, cooling factor, and shock standoff distance for inviscid flow over blunt bodies at conditions corresponding to high-speed earth entry. The data which were curve fitted were calculated by using a technique which utilizes a one-strip integral method and a detailed nongray radiation model to generate a radiatively coupled flow-field solution for air in chemical and local thermodynamic equilibrium. The range of free-stream parameters considered were altitudes from about 55 to 70 km and velocities from about 11 to 16 km.sec. Spherical bodies with nose radii from 30 to 450 cm and elliptical bodies with major-to-minor axis ratios of 2, 4, and 6 were treated. Powerlaw formulas are proposed and a least-squares logarithmic fit is used to evaluate the constants. It is shown that the data can be described in this manner with an average deviation of about 3 percent (or less) and a maximum deviation of about 10 percent (or less). The curve-fit formulas provide an effective and economic means for making preliminary design studies for situations involving high-speed earth entry.

Suttles, J. T.↗

Lock for Tube Fittings

Attachment for nuts of tube fittings locks fittings securely. Attachment includes covers for nut on tube fitting and nut on boss fitting.

Hein, L. A.↗

Fracture analysis of radial scientific instrument module registration fittings of the space telescope

The space telescope contains various scientific instrument (SI) modules which are mounted to the Focal Plane Structure (FPS) in a statically determinate manner. This is accomplished by using three registration fittings per SI module, one resisting three translations, another resisting two and the third resisting only one. Due to thermal insulating requirements these fittings are complex devices composed of numerous pieces. The structural integrity of these fittings is of great importance to the safety of the orbiter transporting the telescope, so in addition to the stress analyses performed during the design of these components, fracture susceptibility also needs to be considered. The pieces of the registration fittings for the Radial SI Module containing the Wide Field Planetary Camera are examined to determine which would endanger the orbiter if they fractured and what is the likelihood of their fracture. The latter is stated in terms of maximum allowable initial flaw sizes in these pieces.

Springfield, C. W., Jr.↗

Evaluation of the NASA/JSC Health Related Fitness Program

The effects of the NASA Health Related Fitness Program (HRFP), which includes a 12-week educational component (EC) and quarterly fitness retests (RT), on the results of periodic testing of fitness, body composition, and blood lipids were evaluated in three goups of pilots. These included the group of compliers (those who completed EC and not less than 75 percent RT), the noncompliers (completed EC and lesss than 75 percent RT), and the dropouts from EC. Results show that beneficial changes in physical activity found two years after the completion of the HRFP were related to both the completion of the EC and the periodic fitness reevaluations. These changes were associated with maximal oxygen consumption, percent body fat, body weight, and blood lipids.

Wier, Larry T.↗

Least-Squares Curve-Fitting Program

Least Squares Curve Fitting program, AKLSQF, easily and efficiently computes polynomial providing least-squares best fit to uniformly spaced data. Enables user to specify tolerable least-squares error in fit or degree of polynomial. AKLSQF returns polynomial and actual least-squares-fit error incurred in operation. Data supplied to routine either by direct keyboard entry or via file. Written for an IBM PC X/AT or compatible using Microsoft's Quick Basic compiler.

Kantak, Anil V.↗

Drag of Exposed Fittings and Surface Irregularities on Airplane Fuselages

Measurements of drag were made on fittings taken from a typical fuselage to determine whether the difference between the observed full size fuselage drag and model fuselage drag could be attributed to the effects of fittings and surface irregularities found on the full size fuselage and not on the model. There are wide variations in the drag coefficients for the different fittings. In general those which protrude little from the surface or are well streamlined show very low and almost negligible drag. The measurements show, however, that a large part of the difference between model and full scale test results may be attributed to these fittings.

Wood, Donald H↗

Floating shock fitting via Lagrangian adaptive meshes

In recent works we have formulated a new approach to compressible flow simulation, combining the advantages of shock-fitting and shock-capturing. Using a cell-centered Roe scheme discretization on unstructured meshes, we warp the mesh while marching to steady state, so that mesh edges align with shocks and other discontinuities. This new algorithm, the Shock-fitting Lagrangian Adaptive Method (SLAM) is, in effect, a reliable shock-capturing algorithm which yields shock-fitted accuracy at convergence. Shock-capturing algorithms like this, which warp the mesh to yield shock-fitted accuracy, are new and relatively untried. However, their potential is clear. In the context of sonic booms, accurate calculation of near-field sonic boom signatures is critical to the design of the High Speed Civil Transport (HSCT). SLAM should allow computation of accurate N-wave pressure signatures on comparatively coarse meshes, significantly enhancing our ability to design low-boom configurations for high-speed aircraft.

Vanrosendale, John↗

Metafitting: Weight optimization for least-squares fitting of PTTI data

For precise time intercomparisons between a master frequency standard and a slave time scale, we have found it useful to quantitatively compare different fitting strategies by examining the standard uncertainty in time or average frequency. It is particularly useful when designing procedures which use intermittent intercomparisons, with some parameterized fit used to interpolate or extrapolate from the calibrating intercomparisons. We use the term 'metafitting' for the choices that are made before a fitting procedure is operationally adopted. We present methods for calculating the standard uncertainty for general, weighted least-squares fits and a method for optimizing these weights for a general noise model suitable for many PTTI applications. We present the results of the metafitting of procedures for the use of a regular schedule of (hypothetical) high-accuracy frequency calibration of a maser time scale. We have identified a cumulative series of improvements that give a significant reduction of the expected standard uncertainty, compared to the simplest procedure of resetting the maser synthesizer after each calibration. The metafitting improvements presented include the optimum choice of weights for the calibration runs, optimized over a period of a week or 10 days.

Douglas, Rob J.↗

Local area analysis of high-degree solar oscillations: New ring fitting procedures

The local area analysis of five-minute solar oscillations using ring diagrams to determine subphotospheric velocity flows is a tool for convection zone dynamics. In relation to the problem of the large computational task of fitting the rings, a faster method is presented that carries out the ring fitting using data obtained with a high l helioseismometer. Noise sources are eliminated, and a perturbation approach is used to fit the azimuthally averaged spectrum. The parameters determined in this way are held constant while the ring diagram is fitted. The results obtained are presented and discussed.

Haber, Deborah A.↗

Alignment Jigs For Bonding End Fittings To Truss Members

Set of alignment jigs hold fittings during adhesive bonding of fittings to ends of truss members. For each member, jigs hold two end fittings collinear while member allowed to move slightly, within dimensional tolerances, during injection and curing of adhesive. Once adhesive cured, fittings remain collinear even though member not necessarily perfectly straight between them.

Sword, Lee F.↗

Two-Component Fitting of Coronal-Hole and Quiet-Sun He I 1083 Spectra

We present reduction techniques and first results for detailed fitting of solar spectra obtained with the NASA/National Solar Observatory Spectromagnetograph (NASA/NSO SPM over a 2 nm bandpass centered on the He 1 1083 nm line. The observation for this analysis was a spectra-spectroheliogram obtained at the NSO/Kitt Peak Vacuum Telescope (KPVT) on 00 Apr 17 at 21:46 UT spanning an area of 512 x 900 arc-seconds; the field of view included a coronal hole near disk center as well as surrounding quiet sun. Since the He I line is very weak and blended with nearby solar and telluric lines, accurate determination of the continuum intensity as a function of wavelength is crucial. We have modified the technique of Malanushenko {\it et al.) (1992; {\it AA) (\bf 259), 567) to tie regions of continuua and the wings of spectral lines which show little variation over the image to standard reference spectra such as the NSO Fourier Transform Spectrometer atlas (Wallace {\it et al). 1993; NSO Tech Report \#93-001). We performed detailed least-squares fits of spectra from selected areas, accounting for all the known telluric and solar absorbers in the spectral bandpass. The best physically consistent fits to the Helium lines were obtained with Gaussian profiles from two components (one ''cool'', characteristic of the upper chromosphere; one ''hot'', representing the cool transition region at 2-3 x 10$^{4)$ K). In the coronal hole, the transition-region component, shifted by 6-7 km/s to the blue, is mildly dominant, consistent with mass outflow as suggested by Dupree {\it et all. (1996; {\it Ap. J.}-{\bf 467), 121). In quiet-sun spectra there is less evidence of outward flow, and the chromospheric component is more important. All our fitted spectra show a very weak unidentified absorption feature at 1082.880 nm in the red wing of the nearby Si I line.

Jones, Harrison P.↗

Steps Toward a Large Space-Based UV/Optical Fizeau Interferometer: The GSFC Fizeau Interferometer Testbed (FIT)

Goddard Space Flight Center is pursuing the development of space-based, long-baseline (0.5km) UV-optical Fizeau imaging interferometers to enable the next major stride toward very high angular resolution astronomical observations. This effort includes the development and operation of the Fizeau Interferometry Testbed (FIT), in collaboration with the Naval Research Lab/NPOI, Univ. of MD, and Sigma Space Corporation. The FIT will be used to explore the principles of and requirements for the Stellar Imager (SI) mission concept (http://hires.gsfc.nasa.gov/~si) and other such Fizeau Interferometers/Sparse Aperture Telescope missions, leading in the end to the Planet Imager (PI), which is the ultimate goal of the current Origins Program. The primary goal of the FIT program is to demonstrate closed-loop control of mirrors (tip, tilt, piston, translation of array elements) and the overall system to keep the optical beams in phase and enable high quality imaging by a many-element (7-30) Fizeau Interferometric System. The FIT will also be used to assess various wave-front reconstruction and sensing and image reconstruction algorithms for utility and accuracy by application to real data generated by the Testbed. In this paper, we describe the design and goals of the system, provide a status report on its construction, and note our future plans.

Carpenter, K. G.↗

Fitting a Two-Component Scattering Model to Polarimetric SAR Data from Forests

Two simple scattering mechanisms are fitted to polarimetric synthetic aperture radar (SAR) observations of forests. The mechanisms are canopy scatter from a reciprocal medium with azimuthal symmetry and a ground scatter term that can represent double-bounce scatter from a pair of orthogonal surfaces with different dielectric constants or Bragg scatter from a moderately rough surface, which is seen through a layer of vertically oriented scatterers. The model is shown to represent the behavior of polarimetric backscatter from a tropical forest and two temperate forest sites by applying it to data from the National Aeronautic and Space Agency/Jet Propulsion Laboratory's Airborne SAR (AIRSAR) system. Scattering contributions from the two basic scattering mechanisms are estimated for clusters of pixels in polarimetric SAR images. The solution involves the estimation of four parameters from four separate equations. This model fit approach is justified as a simplification of more complicated scattering models, which require many inputs to solve the forward scattering problem. The model is used to develop an understanding of the ground-trunk double-bounce scattering that is present in the data, which is seen to vary considerably as a function of incidence angle. Two parameters in the model fit appear to exhibit sensitivity to vegetation canopy structure, which is worth further exploration. Results from the model fit for the ground scattering term are compared with estimates from a forward model and shown to be in good agreement. The behavior of the scattering from the ground-trunk interaction is consistent with the presence of a pseudo-Brewster angle effect for the air-trunk scattering interface. If the Brewster angle is known, it is possible to directly estimate the real part of the dielectric constant of the trunks, a key variable in forward modeling of backscatter from forests. It is also shown how, with a priori knowledge of the forest height, an estimate for the attenuation coefficient of the canopy can be obtained directly from the multi-incidence-angle polarimetric observations. This attenuation coefficient is another key variable in forward models and is generally related to the canopy density.

temperate forests↗