Results for “ECOLOGY” — Page 7

DOE OSTI2022

Soil viral diversity, ecology and climate change

Soil viruses are highly abundant and have important roles in the regulation of host dynamics and soil ecology. Climate change is resulting in unprecedented changes to soil ecosystems and the life forms that reside there, including viruses. In this Review, we explore our current understanding of soil viral diversity and ecology, and we discuss how climate change (such as extended and extreme drought events or more flooding and altered precipitation patterns) is influencing soil viruses. Finally, here, we provide our perspective on future research needs to better understand how climate change will impact soil viral ecology.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2019

A general framework for quantitatively assessing ecological stochasticity

Understanding the community assembly mechanisms controlling biodiversity patterns is a central issue in ecology. Although it is generally accepted that both deterministic and stochastic processes play important roles in community assembly, quantifying their relative importance is challenging. Here we propose a general mathematical framework to quantify ecological stochasticity under different situations in which deterministic factors drive the communities more similar or dissimilar than null expectation. An index, normalized stochasticity ratio ( NST ), was developed with 50% as the boundary point between more deterministic (<50%) and more stochastic (>50%) assembly. NST was tested with simulated communities by considering abiotic filtering, competition, environmental noise, and spatial scales. All tested approaches showed limited performance at large spatial scales or under very high environmental noise. However, in all of the other simulated scenarios, NST showed high accuracy (0.90 to 1.00) and precision (0.91 to 0.99), with averages of 0.37 higher accuracy (0.1 to 0.7) and 0.33 higher precision (0.0 to 1.8) than previous approaches. NST was also applied to estimate stochasticity in the succession of a groundwater microbial community in response to organic carbon (vegetable oil) injection. Our results showed that community assembly was shifted from more deterministic ( NST = 21%) to more stochastic ( NST = 70%) right after organic carbon input. As the vegetable oil was consumed, the community gradually returned to be more deterministic ( NST = 27%). In addition, our results demonstrated that null model algorithms and community similarity metrics had strong effects on quantifying ecological stochasticity.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2016

Functional remediation components: A conceptual method of evaluating the effects of remediation on risks to ecological receptors

Governmental agencies, regulators, health professionals, tribal leaders, and the public are faced with understanding and evaluating the effects of cleanup activities on species, populations, and ecosystems. While engineers and managers understand the processes involved in different remediation types such as capping, pump and treat, and natural attenuation, there is often a disconnect between (1) how ecologists view the influence of different types of remediation, (2) how the public perceives them, and (3) how engineers understand them. The overall goal of the present investigation was to define the components of remediation types (= functional remediation). Objectives were to (1) define and describe functional components of remediation, regardless of the remediation type, (2) provide examples of each functional remediation component, and (3) explore potential effects of functional remediation components in the post-cleanup phase that may involve continued monitoring and assessment. Functional remediation components include types, numbers, and intensity of people, trucks, heavy equipment, pipes, and drill holes, among others. Several components may be involved in each remediation type, and each results in ecological effects, ranging from trampling of plants, to spreading invasive species, to disturbing rare species, and to creating fragmented habitats. In some cases remediation may exert a greater effect on ecological receptors than leaving the limited contamination in place. A goal of this conceptualization is to break down functional components of remediation such that managers, regulators, and the public might assess the effects of timing, extent, and duration of different remediation options on ecological systems.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

AmeriFlux FLUXNET-1F US-xJE NEON Jones Ecological Research Center (JERC)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-xJE NEON Jones Ecological Research Center (JERC). This is the FLUXNET version of the carbon flux data for the site US-xJE NEON Jones Ecological Research Center (JERC) produced by applying the standard ONEFlux (1F) software. Site Description - This terrestrial relocatable field site is located in the Joseph Jones Ecological Research Center is an 11,000-hectare reserve located within the Lower Coastal Plains and Flatwoods areas in southern Georgia. The Jones site has been managed with low intensity, dormant-season prescribed fires for the past 75 years at a frequency of every 3-4 years.

Network), NEON (National Ecological Observatory↗

DOE OSTI2024

Exploring Ecological, Morphological, and Environmental Controls on Coastal Foredune Evolution at Annual Scales Using a Process-Based Model

Coastal communities commonly rely upon foredunes as the first line of defense against sea-level rise and storms, thus requiring management guidance to optimize their protective services. Here, we use the AeoLiS model to simulate wind-driven accretion and wave-driven erosion patterns on foredunes with different morphologies and ecological properties under modern-day conditions. Additional sets of model runs mimic potential future climate changes to inform how both morphological and ecological properties may have differing contributions to net dune changes under evolving environmental forcing. This exploratory study, applied to represent the morphological, environmental, and ecological conditions of the northern Outer Banks, North Carolina, USA, finds that dunes experiencing minimal wave collision have similar net volumetric growth rates regardless of beach morphology, though the location and density of vegetation influence sediment deposition patterns across the dune profile. The model indicates that high-density, uniform planting strategies trap sediment close to the dune toe, whereas low-density plantings may allow for accretion across a broader extent of the dune face. The initial beach and dune shape generally plays a larger role in annual-scale dune evolution than vegetation cover. For steeper beach slopes and/or low dune toe elevations, the model generally predicts wave-driven dune erosion at the annual scale.

Environmental Sciences & Ecology↗

NASA NTRS2020

Costa Rica & Panama Ecological Forecasting II: Identifying Current and Future Areas of Environmental Concern in La Amistad International Park to Inform Resource Management

Seven percent of all scientifically known life forms lie within the 202,230 square miles of Central America, making this area ecologically unique and increasing the need for environmental management. The Mesoamerican Biological Corridor forms a conservation partnership throughout Central America to establish a forested corridor of over 600 protected areas. Although conservation programs exist, deforestation still afflicts the area, putting strain on these diverse ecosystems. La Amistad International Park in southern Costa Rica and northern Panama in particular faces conflicting land use changes. Expanding agricultural development and urbanization, combined with concern over indigenous land rights, have raised questions about the implementation of sustainability goals and communication strategies within the region. To help address these issues, the NASA DEVELOP Costa Rica & Panama Ecological Forecasting II team continued a partnership with the Ministry of Environment and Energy in Costa Rica and the National Environmental Authority in Panama. The team created a Land Use Conflict Identification Strategy (LUCIS) model based on land cover maps for 2019 and 2029 that were created in term I using imagery from Landsat 8 Operational Land Imager (OLI). With partner input, the team applied weights to different objectives and combined suitability maps to identify areas of potential biodiversity conflict. Additionally, the team created a Short-term Forest Change (SFTC) Tool using Terra Moderate Resolution Imaging Spectroradiometer, Landsat 8 OLI, and Sentinel-2 Multispectral Instrument to help the partners identify areas of immediate, major forest changes. The LUCIS model indicated higher agricultural growth when compared to the ecological category.

Ecological Forecasting↗

NASA NTRS2020

Costa Rica & Panama Ecological Forecasting II: Identifying Current and Future Areas of Environmental Concern in La Amistad International Park to Inform Resource Management

Seven percent of all scientifically known life forms lie within the 202,230 square miles of Central America, making this area ecologically unique and increasing the need for environmental management. The Mesoamerican Biological Corridor forms a conservation partnership throughout Central America to establish a forested corridor of over 600 protected areas. Although conservation programs exist, deforestation still afflicts the area, putting strain on these diverse ecosystems. La Amistad International Park in southern Costa Rica and northern Panama in particular faces conflicting land use changes. Expanding agricultural development and urbanization, combined with concern over indigenous land rights, have raised questions about the implementation of sustainability goals and communication strategies within the region. To help address these issues, the NASA DEVELOP Costa Rica & Panama Ecological Forecasting II team continued a partnership with the Ministry of Environment and Energy in Costa Rica and the National Environmental Authority in Panama. The team created a Land Use Conflict Identification Strategy (LUCIS) model based on land cover maps for 2019 and 2029 that were created in term I using imagery from Landsat 8 Operational Land Imager (OLI). With partner input, the team applied weights to different objectives and combined suitability maps to identify areas of potential biodiversity conflict. Additionally, the team created a Short-term Forest Change (SFTC) Tool using Terra Moderate Resolution Imaging Spectroradiometer, Landsat 8 OLI, and Sentinel-2 Multispectral Instrument to help the partners identify areas of immediate, major forest changes. The LUCIS model indicated higher agricultural growth when compared to the ecological category.

Ecological Forecasting↗

NASA NTRS2020

Costa Rica & Panama Ecological Forecasting II: Identifying Current and Future Areas of Environmental Concern in La Amistad International Park to Inform Resource Management

Seven percent of all scientifically known life forms lie within the 202,230 square miles of Central America, making this area ecologically unique and increasing the need for environmental management. The Mesoamerican Biological Corridor forms a conservation partnership throughout Central America to establish a forested corridor of over 600 protected areas. Although conservation programs exist, deforestation still afflicts the area, putting strain on these diverse ecosystems. La Amistad International Park in southern Costa Rica and northern Panama in particular faces conflicting land use changes. Expanding agricultural development and urbanization, combined with concern over indigenous land rights, have raised questions about the implementation of sustainability goals and communication strategies within the region. To help address these issues, the NASA DEVELOP Costa Rica & Panama Ecological Forecasting II team continued a partnership with the Ministry of Environment and Energy in Costa Rica and the National Environmental Authority in Panama. The team created a Land Use Conflict Identification Strategy (LUCIS) model based on land cover maps for 2019 and 2029 that were created in term I using imagery from Landsat 8 Operational Land Imager (OLI). With partner input, the team applied weights to different objectives and combined suitability maps to identify areas of potential biodiversity conflict. Additionally, the team created a Short-term Forest Change (SFTC) Tool using Terra Moderate Resolution Imaging Spectroradiometer, Landsat 8 OLI, and Sentinel-2 Multispectral Instrument to help the partners identify areas of immediate, major forest changes. The LUCIS model indicated higher agricultural growth when compared to the ecological category.

Ecological Forecasting↗

NASA NTRS2019

The Terrestrial Organism and Biogeochemistry Spatial Sampling Design for the National Ecological Observatory Network

The National Ecological Observatory Network (NEON) seeks to facilitate ecological prediction at a continental scale by measuring processes that drive change and responses at sites across the United States for thirty years. The spatial distribution of observations of terrestrial organisms and soil within NEON sites is determined according to a “design‐based” sample design that relies on the randomization of sampling locations. Development of the sample design was guided by high‐level NEON objectives and the multitude of data products that will be subjected to numerous analytical approaches to address the causes and consequences of ecological change. A requirement framework permeates the NEON design, ensuring traceability from each facet of the design to the high‐level requirements that make the NEON mission statement actionable. Requirements were developed for the terrestrial sample design to guide the key components of the design: Randomizing the sample locations ensures the unbiased collection of data, is appropriate for organisms and soil, and provides data suitable for a variety of analyses. Stratification increases efficiency and allows sampling to focus on those parts of the landscape measured by other NEON observation platforms. Attention to the sample size and spatial plot allocation ensures that data products will be sufficient to inform questions asked of the data and the NEON objectives. Establishing a framework with the capacity for re‐evaluate and design iteration allows for adaption to unexpected challenges and optimization of the sample design based on early data returns. The utility of the NEON sampling design is highlighted by its application across terrestrial systems. The data generated from this unique design will be used to quantify patterns in: the abundance and diversity of small mammals, breeding birds, insects, and soil microbes; vegetation structure, biomass, productivity, and diversity; and soil biogeochemistry.

National Ecological Observatory Network↗

DOE OSTI2019

Development of Concentration Ratios and Transfer Factors for Human and Ecological Probabilistic Performance Assessments - 19781

Human and ecological risk assessments utilize concentration ratios and transfer factors to calculate contaminant concentrations in plant and animal tissues in equilibrium with soil or water (concentration ratios) or based on an animal's contaminant intake from various media (transfer factors). These ratios and factors are used to evaluate human dose via food ingestion pathways and to evaluate ecological dose to an organism. In a probabilistic performance assessment, concentration ratio and transfer factor distributions are developed for every element, and these distributions are applied across the spatial and temporal domain of the assessment. As a result, it is necessary to scale the underlying data distributions by applying the central limit theorem to develop appropriate distributions of the mean for the temporal and spatial scale of the model. Herein we discuss the methodologies for identifying and ranking references, and how to develop statistical distributions of concentration ratios and transfer factors for probabilistic performance assessment models. We also discuss factors that could be pertinent to differences when selecting references and developing distributions for human versus ecological risk assessment scenarios. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2020

A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming

Abstract Unraveling the drivers controlling community assembly is a central issue in ecology. Although it is generally accepted that selection, dispersal, diversification and drift are major community assembly processes, defining their relative importance is very challenging. Here, we present a framework to quantitatively infer community assembly mechanisms by phylogenetic bin-based null model analysis (iCAMP). iCAMP shows high accuracy (0.93–0.99), precision (0.80–0.94), sensitivity (0.82–0.94), and specificity (0.95–0.98) on simulated communities, which are 10–160% higher than those from the entire community-based approach. Application of iCAMP to grassland microbial communities in response to experimental warming reveals dominant roles of homogeneous selection (38%) and ‘drift’ (59%). Interestingly, warming decreases ‘drift’ over time, and enhances homogeneous selection which is primarily imposed on Bacillales. In addition, homogeneous selection has higher correlations with drought and plant productivity under warming than control. iCAMP provides an effective and robust tool to quantify microbial assembly processes, and should also be useful for plant and animal ecology.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2016

Novel covariance-based neutrality test of time-series data reveals asymmetries in ecological and economic systems

Systems as diverse as the interacting species in a community, alleles at a genetic locus, and companies in a market are characterized by competition (over resources, space, capital, etc) and adaptation. Neutral theory, built around the hypothesis that individual performance is independent of group membership, has found utility across the disciplines of ecology, population genetics, and economics, both because of the success of the neutral hypothesis in predicting system properties and because deviations from these predictions provide information about the underlying dynamics. However, most tests of neutrality are weak, based on static system properties such as species-abundance distributions or the number of singletons in a sample. Time-series data provide a window onto a system’s dynamics, and should furnish tests of the neutral hypothesis that are more powerful to detect deviations from neutrality and more informative about to the type of competitive asymmetry that drives the deviation. Here, we present a neutrality test for time-series data. We apply this test to several microbial time-series and financial time-series and find that most of these systems are not neutral. Our test isolates the covariance structure of neutral competition, thus facilitating further exploration of the nature of asymmetry in the covariance structure of competitive systems. Much like neutrality tests from population genetics that use relative abundance distributions have enabled researchers to scan entire genomes for genes under selection, we anticipate our time-series test will be useful for quick significance tests of neutrality across a range of ecological, economic, and sociological systems for which time-series data are available. Here, future work can use our test to categorize and compare the dynamic fingerprints of particular competitive asymmetries (frequency dependence, volatility smiles, etc) to improve forecasting and management of complex adaptive systems.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

Ecological niche models display nonlinear relationships with abundance and demographic performance across the latitudinal distribution of Astragalus utahensis (Fabaceae)

Abstract The potential for ecological niche models (ENMs) to accurately predict species' abundance and demographic performance throughout their geographic distributions remains a topic of substantial debate in ecology and biogeography. Few studies simultaneously examine the relationship between ENM predictions of environmental suitability and both a species' abundance and its demographic performance, particularly across its entire geographic distribution. Yet, studies of this type are essential for understanding the extent to which ENMs are a viable tool for identifying areas that may promote high abundance or performance of a species or how species might respond to future climate conditions. In this study, we used an ensemble ecological niche model to predict climatic suitability for the perennial forb Astragalus utahensis across its geographic distribution. We then examined relationships between projected climatic suitability and field‐based measures of abundance, demographic performance, and forecasted stochastic population growth (λ s ). Predicted climatic suitability showed a J‐shaped relationship with A. utahensis abundance, where low‐abundance populations were associated with low‐to‐intermediate suitability scores and abundance increased sharply in areas of high predicted climatic suitability. A similar relationship existed between climatic suitability and λ s from the center to the northern edge of the latitudinal distribution. Patterns such as these, where density or demographic performance only increases appreciably beyond some threshold of climatic suitability, support the contention that ENM‐predicted climatic suitability does not necessarily represent a reliable predictor of abundance or performance across large geographic regions.

Baer, Kathryn C.↗

DOE OSTI2022

Delayed fire mortality has long‐term ecological effects across the Southern Appalachian landscape

Abstract Fire is a critical ecological process to the forests of the Southern Appalachians. Where fire was excluded from forest types that historically burned frequently, unanticipated changes can occur when fire is reintroduced. For example, the development of new fuel characteristics can change the patterns of fire mortality and associated ecological responses. To test the fire effects of delayed fire mortality (mortality initiated by fire that occurs subsequent to the fire year) in the Southern Appalachians, USA, we developed a fire‐effects model using both field studies and remote sensing. We then simulated these effects at a landscape scale to estimate broader ecological effects. Fire‐effects models that accounted for delayed mortality increased landscape biomass removed annually (~23%) and increased the number of sites with high light conditions (leaf area index < 4) when compared to simulations that only account for immediate mortality. While delayed mortality occurred across species and age classes, it was especially prevalent among older trees (>100 years old) and fire‐resistant species ( Quercus spp.). Overall, regeneration (trees <20 years old) changed very little, even with the inclusion of delayed mortality. This evidence suggests that, even when accounting for delayed mortality, individual fires are unlikely to shift the landscape composition toward the conditions of forests prior to fire exclusion and may even increase mesophication long term due to the loss of overstory dominant xeric trees.

Robbins, Zachary J.↗

DOE OSTI2014

Assessing ecological risks to the fish community from residual coal fly ash in Watts Bar Reservoir, Tennessee

For this research, extensive site-specific biological and environmental data were collected to support an evaluation of risks to the fish community in Watts Bar Reservoir from residual ash from the December 2008 Tennessee Valley Authority (TVA) Kingston ash release. This paper describes the approach used and results of the risk assessment for the fish community, which consists of multiple measurement endpoints (measures of exposure and effects) for fish. The lines of evidence included 1) comparing postspill annual fish community assessments with nearby prespill data and data from other TVA reservoirs, 2) evaluating possible effects of exposures of fish eggs and larval fish to ash in controlled laboratory toxicity tests, 3) evaluating reproductive competence of field-exposed fish, 4) assessing individual fish health through physical examination, histopathology, and blood chemistry, 5) comparing fish tissue concentrations with literature-based critical body residues, and 6) comparing concentrations of ash-related contaminants in surface waters with US Environmental Protection Agency's (USEPA) Ambient Water Quality Standards for Fish and Aquatic Life. These measurement endpoints were treated as independent lines of evidence that were integrated into an overall weight-of-evidence estimate of risk to the fish community. Collectively, the data and analysis presented here indicate that ash and ash-related constituents pose negligible risks to the fish communities in Watts Bar Reservoir. This conclusion contradicts the predictions by some researchers immediately following the ash release of devastating effects on the aquatic ecology of Watts Bar Reservoir. The information presented in this article reaffirms the wisdom of carefully evaluating the evidence before predicting probable ecological effects of a major event such as the TVA Kingston ash release. Lastly, this study demonstrates that a thorough and detailed investigation using multiple measurement endpoints is needed to properly evaluate ecological effects.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2019

Ecological engineering projects increased vegetation cover, production, and biomass in semiarid and subhumid Northern China

Multiple ecological engineering projects have been implemented in semiarid and subhumid Northern China since 1978 with the purpose to combat desertification, control dust storms, and improve vegetation cover. Although a plethora of local studies exist, the effectiveness of these projects has not been studied in a systematic and comprehensive way. Here, we used multiple satellite-based time-series data as well as breakpoint analysis to assess shifts in leaf area index (a proxy for green vegetation cover), gross primary production, and aboveground biomass in Northern China. We documented increased vegetation growth in northwest and southeastern parts of the region, despite drought anomalies as documented by the standardized precipitation-evapotranspiration index during 1982–2016. Significant breakpoints in leaf area index were observed for over 72.5% of the southeastern and northwestern regions, and 70.6% of these breakpoints were detected after 1999, which correspond well to the areas with the highest ecological engineering efforts. Areas with negative trends were mainly located in the Inner Mongolian Plateau, Hulun Biur, Horqin Sand Land, and urban areas. The Loess Plateau had the largest increase in vegetation growth, followed by the north parts of Northern China where biomass increased more in the provinces of Shanxi, Liaoning, Shannxi, Hebei, and Beijing than Xinjiang, Inner Mongolia, Tianjin, and Qinghai. Our results show that multiple ecological engineering projects in the region have increased vegetation cover, production, and aboveground biomass that have led to improved environmental conditions in the study area.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

An ecological framework for microbial metabolites in the ocean ecosystem

The ocean microbe‐metabolite network involves thousands of individual metabolites that encompass a breadth of chemical diversity and biological functions. These microbial metabolites mediate biogeochemical cycles, facilitate ecological relationships, and impact ecosystem health. While analytical advancements have begun to illuminate such roles, a challenge in navigating the deluge of marine metabolomics information is to identify a subset of metabolites that have the greatest ecosystem impact. Here, we present an ecological framework to distill knowledge of fundamental metabolites that underpin marine ecosystems. We borrow terms from macroecology that describe important species, namely “dominant,” “keystone,” and “indicator” species, and apply these designations to metabolites within the ocean microbial metabolome. These selected metabolites may shape marine community structure, function, and health and provide focal points for enhanced study of microbe‐metabolite networks. Applying ecological concepts to marine metabolites provides a path to leverage metabolomics data to better describe and predict marine microbial ecosystems.

microbial metabolites↗

DOE OSTI2023

Quantitative Representativeness and Constituency of the Long-Term Agroecosystem Research Network and Analysis of Complementarity with Existing Ecological Networks

Abstract Studies conducted at sites across ecological research networks usually strive to scale their results to larger areas, trying to reach conclusions that are valid throughout larger enclosing regions. Network representativeness and constituency can show how well conditions at sampling locations represent conditions also found elsewhere and can be used to help scale-up results over larger regions. Multivariate statistical methods have been used to design networks and select sites that optimize regional representation, thereby maximizing the value of datasets and research. However, in networks created from already established sites, an immediate challenge is to understand how well existing sites represent the range of environments in the whole area of interest. We performed an analysis to show how well sites in the USDA Long-Term Agroecosystem Research (LTAR) Network represent all agricultural working lands within the conterminous United States (CONUS). Our analysis of 18 LTAR sites, based on 15 climatic and edaphic characteristics, produced maps of representativeness and constituency. Representativeness of the LTAR sites was quantified through an exhaustive pairwise Euclidean distance calculation in multivariate space, between the locations of experiments within each LTAR site and every 1 km cell across the CONUS. Network representativeness is from the perspective of all CONUS locations, but we also considered the perspective from each LTAR site. For every LTAR site, we identified the region that is best represented by that particular site—its constituency—as the set of 1 km grid locations best represented by the environmental drivers at that particular LTAR site. Representativeness shows how well the combination of characteristics at each CONUS location was represented by the LTAR sites’ environments, while constituency shows which LTAR site was the closest match for each location. LTAR representativeness was good across most of the CONUS. Representativeness for croplands was higher than for grazinglands, probably because croplands have more specific environmental criteria. Constituencies resemble ecoregions but have their environmental conditions “centered” on those at particular existing LTAR sites. Constituency of LTAR sites can be used to prioritize the locations of experimental research at or even within particular sites, or to identify the extents that can likely be included when generalizing knowledge across larger regions of the CONUS. Sites with a large constituency have generalist environments, while those with smaller constituency areas have more specialized environmental combinations. These “specialist” sites are the best representatives for smaller, more unusual areas. The potential of sharing complementary sites from the Long-Term Ecological Research (LTER) Network and the National Ecological Observatory Network (NEON) to boost representativeness was also explored. LTAR network representativeness would benefit from borrowing several NEON sites and the Sevilleta LTER site. Later network additions must include such specialist sites that are targeted to represent unique missing environments. While this analysis exhaustively considered principal environmental characteristics related to production on working lands, we did not consider the focal agronomic systems under study, or their socio-economic context.

54 ENVIRONMENTAL SCIENCES↗