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DOE OSTI2022

Guidelines for Publicly Archiving Terrestrial Model Data to Enhance Usability, Intercomparison, and Synthesis

Scientific communities are increasingly publishing data to evaluate, accredit, and build on published research. However, guidelines for curating data for publication are sparse for model-related research, limiting the usability of archived simulation data. In particular, there are no established guidelines for archiving data related to terrestrial models that simulate land processes and their coupled interactions with climate. Terrestrial modelers have a unique set of challenges when publishing data due to the diversity of scientific domains, research questions, and the types and scales of simulations. Researchers in the U.S. Department of Energy’s (DOE) projects use a variety of multiscale models to advance robust predictions of terrestrial and subsurface ecosystem processes. Here, we synthesize archiving needs for data associated with different DOE models, and provide guidelines for publishing terrestrial model data components following FAIR (Findable, Accessible, Interoperable, Reusable) principles. The guidelines recommend archiving model inputs and testing data used in final simulation runs along with associated codes, workflow scripts, and metadata in public repositories. Researchers should consider archiving model outputs if they are within the storage limits of the repository. We also provide considerations for how to bundle files into different data publications with citable digital object identifiers. Finally, we identify repository features and tools that would enable storage and reuse of model data. Given the diversity of DOE terrestrial models, these guidelines are transferable to other model types and will enable efficient reuse of simulation data for purposes such as model intercomparisons, initialization, benchmarking, synthesis, and comparisons with field observations.

58 GEOSCIENCES↗
DOE OSTI2024

Vegetation Warming Experiment: Chamber and ambient plot digital camera imagery for vegetation phenology, Utqiagvik (Barrow), Alaska, 2021

Time lapse photography of experimental plots within five warming chambers (ZPWs) and paired control plots located on the Barrow Environmental Observatory (BEO), Utqiagvik, Alaska. Images were recorded from 17 June to 19 September, 2021 to capture vegetation dynamics during the growing season. Vegetation phenology, including green up and senescence were captured. Images were recorded daily at 30 minute intervals, from 09:00 - 16:30 Alaska daylight time (AKDT, UTC-8), using Wingscapes TimelapseCam Pro cameras. The target species was Carex aquatilis. Individual jpg images from each camera have been combined in zip format. The data package includes a metadata document with example fields of view from each camera (*.pdf). The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Digital camera imagery for vegetation phenology, Seward Peninsula, Alaska, 2019-2021

Time lapse camera images from Kougarok mile marker (MM) 64 and Teller MM 27 NGEE-Arctic field sites on the Seward Peninsula, Alaska, captured from July 2019 to August 2021. Thirty three Wingscape Timelapse Pro cameras were deployed targeting patches of low and tall shrubs (including Alnus sp. and Salix sp.) and general vegetation and landscape views. Images from were recorded at hourly intervals from 11 AM to 2 PM, continuously for 25 months and capture vegetation phenology, snow accumulation and snow melt events. This data package includes images (*.jpg), organized by site and camera ID, and metadata with details of the cameras used, number of images recorded, start and end dates, GPS locations and example fields of view. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Transforming the study of organisms: Phenomic data models and knowledge bases

The rapidly decreasing cost of gene sequencing has resulted in a deluge of genomic data from across the tree of life; however, outside a few model organism databases, genomic data are limited in their scientific impact because they are not accompanied by computable phenomic data. The majority of phenomic data are contained in countless small, heterogeneous phenotypic data sets that are very difficult or impossible to integrate at scale because of variable formats, lack of digitization, and linguistic problems. One powerful solution is to represent phenotypic data using data models with precise, computable semantics, but adoption of semantic standards for representing phenotypic data has been slow, especially in biodiversity and ecology. Some phenotypic and trait data are available in a semantic language from knowledge bases, but these are often not interoperable. In this review, we will compare and contrast existing ontology and data models, focusing on nonhuman phenotypes and traits. We discuss barriers to integration of phenotypic data and make recommendations for developing an operationally useful, semantically interoperable phenotypic data ecosystem.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Roadmap to Automated Mobility Systems: Informing the Planning of a Sustainable, Resilient Transportation Ecosystem for Dallas/Fort Worth International Airport

The National Renewable Energy Laboratory (NREL) developed this report to provide Dallas/Fort Worth International Airport (DFW) assistance toward a vision that considers the maturation and proliferation of mobility automation, electrification, and infrastructure integrated with Internet of Things (IoT) technologies as they present themselves on the path to 2035. In planning ongoing infrastructure investments, DFW has goals to accommodate and leverage these enabling technologies toward greater sustainability and enhanced traveler and employee experiences, ensuring that infrastructure investments are fully utilized into the future. The objective of this document is to assist DFW to anticipate and envision future airport access by travelers, employees, and goods by examining existing needs and exploring opportunities enabled by technology that informs longer-term infrastructure planning. The vast infrastructure of DFW, which includes buildings, roadways, and other physical structures, as well as growing digital and energy network infrastructures, requires long-term planning and strategy to fully leverage technology advancement and avoid abandoning assets due to functional obsolescence.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2024

Vegetation Warming Experiment: Landscape-scale digital camera imagery for vegetation phenology, Utqiagvik (Barrow), Alaska, 2022

Images captured using a StarDot NetCam SC phenocamera looking east from the top of the Barrow Environmental Observatory (BEO) Sled Shed, Utqiaġvik, Alaska. The camera was installed to remotely monitor plant phenology across the site of the Brookhaven National Laboratory (BNL) TEST group's ZPW (Zero Power Warming) experiment (2017-2021) during the growing season of 2022. Images were recorded from late spring (18 May) through to mid fall (25 October). Snowmelt, vegetation growth and senescence, and snow accumulation were captured. Images were uploaded to the BNL FTP server every hour, at 10 minute intervals from 2022-07-01 until 2021-08-10, then hourly until the end of data collection on 2022-10-25. Images have been combined in *.tar.gz format (6 GB, 7367 jpg images). The data package includes a metadata document with example fields of view from each month of operation (*.pdf).The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Estimating snow cover from high-resolution satellite imagery by thresholding blue wavelengths

We report the extent and duration of snow cover, a critical component of the hydrologic cycle and the global climate system, is expected to shift dramatically under climate change. Therefore, developing high-resolution assessments of snow cover change is crucial for estimating the impact of changing snow cover on watershed and ecosystems processes in cold regions. Remote sensing tools provide a powerful method for mapping snow-covered area (SCA) across a landscape. The most common method for estimating SCA utilizes the normalized difference snow index (NDSI), which relies on spectral measurements in the shortwave-infrared wavelengths (SWIR). NDSI can effectively estimate catchment- to regional-scale SCA, but it cannot be used to assess fine-scale SCA because of current limitations on the spatial resolution of satellite-derived SWIR measurements. Here, we map SCA using a threshold of blue wavelengths and high-resolution satellite imagery. The thresholding method, which we call the Blue Snow Threshold algorithm (BST), has previously been used with digital camera imagery. We refine and automate the algorithm for use with cloud-free high-resolution satellite imagery and find that the BST can be used to assess fine-scale SCA. For validation, we compared BST-derived estimates of SCA to a) airborne lidar surveys, b) Landsat fractional SCA, and c) snow disappearance dates from Snow Telemetry (SNOTEL) stations. When compared to airborne lidar surveys of SCA, the BST predicted SCA had a range of F-scores between 0.81 and 0.94 in four study areas in California and Colorado. We also found general agreement between SCA and snow disappearance at multiple SNOTEL sites across the western United States. Given the relatively recent availability of high-resolution satellite imagery with spectral measurements in the visible wavelengths but lacking in SWIR, the BST offers a reliable and easy-to-apply tool for examining fine-scale snow-related processes.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Continuous snow depth and temperature measurements from dense network of above-ground distributed temperature profiling systems from 2021-09-23 to 2024-08-23, Seward Peninsula, Alaska

The dataset contains temperature measurements from distributed temperature profiling (DTP) systems (Dafflon et al., 2022; Wielandt et al., 2022; Wang et al., 2024a; Fiolleau et al., 2024) deployed vertically above the ground surface at a large number of locations from 2021 to 2024. The research is designed to improve understanding of the local heterogeneity in snow depth and snow thermal insulation dynamics, as well as their interactions in a discontinuous permafrost region (Wang et al., 2025). The DTP systems were deployed at 96 locations in a watershed along the Nome-Teller road at mile marker 27 (T27) and at 54 locations on a hillslope along the Kougarok road at mile marker 64 (K64) in the Seward Peninsula, Alaska. The probe location information is stored in Probe_locations_T27.csv and Probe_locations_K64.csv. Temperature measurements were recorded at 15-minute intervals using high-precision digital sensors (accuracy: ±0.1°C, resolution: 0.0078°C). The temperature probes, either 1.4 m or 1.6 m long, contain sensors spaced every 5 cm or 10 cm along their length. The temperature data are stored in compressed files following the format: DTP_snow_air_temperature_(site)_(start)_(end).zip, where site is either T27 or K64, and start and end represent the time series period. Within each ZIP file, individual CSV files are named by probe ID and contain temperature records at different heights above the ground surface.This dataset also includes derived snow depth time series over three snow seasons, estimated from temperature measurements. Snow depth was estimated by identifying the consecutive sensor pair that exhibited the largest drop in high-frequency temperature fluctuations (detailed in the methods). These data are stored in: Snow_depths_flags_(site)_(start)_(end).csv, which includes snow depth time series and corresponding quality flags (defined in the methods) from different probes. Additionally, the dataset includes derived metrics and supporting measurements at selected locations over two snow seasons, contributing to the manuscript of Wang et al., 2025. These locations were chosen based on the availability of high-quality snow depth time series during both seasons. The additional data include: (1) Air temperature proxies measured from the top sensors on the pole when they were not buried by snow, stored in Air_temperature_proxies_(site)_(start)_(end).csv (2) Ground interface temperature, recorded at 3 cm above the ground, stored in Ground_interface_temperature_(site)_(start)_(end).csv (3) Site characteristics, including vegetation height, elevation, and the topographic position index (TPI) within a 50 m radius, stored in Selected_probe_locations_gps_vegheight_tpi_elevation_(site).csv. These metrics were derived from 1 m resolution summer LiDAR-based digital elevation models and digital surface models from Singhania et al., 2023, DOI:10.5440/1832016. Metadata files include data descriptions (_dd.csv) for tabular data. All included files are listed and described in xxxx_flmd.csv.This dataset is an updated version of a previous archive (Wang et al., 2024b, DOI: 10.15485/2475020), incorporating multiple seasons and improved snow depth estimation. Please note that due to large amount of information present in this dataset, many specificities associated with the acquisition of snow temperature, air temperature proxy and estimation of snow depth, and the future archiving of additional datasets on the soil temperature, thaw depth and soil characteristics at these locations, the author would welcome being contacted by people planning to use this dataset.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Light Water Sustainability Program: Optimizing Information Automation Using a New Method Based on System-Theoretic Process Analysis

This report describes the interim progress for research supporting the design and optimization of information automation systems for nuclear power plants. Much of the domestic nuclear fleet is currently focused on modernizing technologies and processes, including transitioning toward digitalization in the control room and elsewhere throughout the plant, along with a greater use of automation, artificial intelligence, robotics, and other emerging technologies. While there are significant opportunities to apply these technologies toward greater plant safety, efficiency, and overall cost-effectiveness, optimizing their design and avoiding potential safety and performance risks depends on ensuring that human-performance-related organizational and technical design issues are identified and addressed. This report describes modeling tools and techniques, based on sociotechnical system theory, to support these design goals and their application in the current research effort. The report is intended for senior nuclear energy stakeholders, including regulators, corporate management, and senior plant management. We have developed and employed a method to design an optimized information automation ecosystem (IAE) based on the systems-theoretic constructs underlying sociotechnical systems theory in general and the Systems-Theoretic Accident Modeling and Processes (STAMP) approach in particular. We argue that an IAE can be modeled as an interactive information control system whose behavior can be understood in terms of dynamic control and feedback relationships amongst the system’s technical and organizational components. Up to this point, we have employed a Causal Analysis based on STAMP (CAST) technique to examine a performance- and safety-related incident at an industry partner’s plant that involved the unintentional activation of an emergency diesel generator. This analysis provided insight into the behavior of the plant’s current information control structure within the context of a specific, significant event. Our ongoing analysis is focused on identifying near-term process improvements and longer-term design requirements for an optimized IAE system. The latter analyses will employ a second STAMP-derived technique, System-Theoretic Process Analysis (STPA). STPA is a useful modeling tool for generating and analyzing actual or potential information control structures. Finally, we have begun modeling plantwide organizational relationships and processes. Organizational system modeling will supplement our CAST and STPA findings and provide a basis for mapping out a plantwide information control architecture. CAST analysis findings indicate an important underlying contributor to the incident under investigation, and a significant risk to information automation system performance, was perceived schedule pressure, which exposed weaknesses in interdepartmental coordination between and within responsible plant organizations and challenged the resilience of established plant processes, until a human caused the initiating event. These findings are discussed in terms of their risk to overall system performance and their implications for information automation system resilience and brittleness. We present two preliminary information automation models. The proactive issue resolution model is a test case of an information automation concept with significant near-term potential for application and subsequent reduction in significant plant events. The IAE model is a more general representation of a broader, plantwide information automation system. From our results, we have generated a set of preliminary system-level requirements and safety constraints. These requirements will be further developed over the remainder of our project in collaboration with nuclear industry subject matter experts and specialists in the technical systems under consideration. Additionally, we will continue to pursue the system analyses initiated in the first part of our effort, with a particular emphasis on STPA as the main tool to identify weak or weakening control structures that affect the resilience of organizations and programs. Our intent is to broaden the scope of the analysis from an individual use case to a related set of use cases (e.g., maintenance tasks, compliance tasks) with similar human-system performance challenges. This will enable more generalized findings to refine the Proactive Issue Resolution and IAE models, as well as their system-level requirements and safety constraints. We will use organizational system modeling analyses to supplement STPA findings and model development. We conclude the report with a set of summary recommendations and an initial draft list of system-level requirements and safety constraints for optimized information automation systems.

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2023

Topographic Correction of Optical Remote Sensing Images in Mountainous Areas: A systematic review

Rugged terrain distorts optical remote sensing observations and subsequently impacts land cover classification and biophysical and biochemical parameter retrieval over mountainous areas. Therefore, topographic correction (TC) is a prerequisite for many remote sensing applications. Although various TC methods have been explored over the past four decades to mitigate topographic effects, a systematic and global review of these studies is still lacking. Using a multicomponent bibliometric approach, we extracted bibliometric metadata from 426 publications identified by searching titles, keywords, and abstracts for research on “topographic correction” and “topographic effects” in Scopus and Web of Science (WoS) from 1980 to 2022. Here this systematic review revealed a rapid growth in the number of TC studies since the 1980s, primarily driven by the availability of decametric-resolution remote sensing observations and digital elevation models (DEMs). Most of the research has focused on relatively low-elevation regions, with increasing attention beyond American and European regions, particularly in China. The seasonal distribution of satellite acquisition for TC showed considerable imbalance, mainly concentrated in months with favorable solar illumination conditions (e.g., May to October). Important themes emerged from the keyword analysis, including satellite sensors, DEMs, TC methods, evaluation criteria, and applications.

58 GEOSCIENCES↗
DOE OSTI2023

Optimizing Information Automation Using a New Method Based on System-Theoretic Process Analysis: Tool Development and Method Evaluation

This report is an update to a prior report that describes progress and findings for a program of research supporting the design and optimization of information automation systems for nuclear power plants. Much of the domestic nuclear fleet is currently focused on modernizing technologies and processes, including transitioning toward digitalization in the control room and throughout the plant, along with a greater interest in the use of automation, artificial intelligence, robotics, and other emerging technologies. While there are significant opportunities to apply these technologies toward greater plant safety, efficiency, and overall cost-effectiveness, optimizing their design and avoiding potential safety and performance risks depends on ensuring that human performance-related organizational and technical design issues are identified and addressed early in the design process. This report describes modeling tools and techniques, based on sociotechnical systems theory, to support these design goals and their application in the current research effort. The report is primarily intended for senior nuclear energy stakeholders, including regulators, corporate management, and senior plant management. We have developed and employed a method to design an optimized information automation ecosystem (IAE) based on the systems-theoretic constructs underlying sociotechnical systems theory in general and the Systems-Theoretic Accident Modeling and Processes (STAMP) approach in particular. We argue that an IAE can be modeled as an interactive information control system whose behavior can be understood in terms of dynamic control, feedback, and communication relationships amongst the system’s technical and organizational components. We have employed two STAMP-based tools in this effort. The first is Causal Analysis based on STAMP (CAST), an accident and incident analysis technique that was used to examine a performance- and safety-related incident at an industry partner’s plant involving the unintentional activation of an emergency diesel generator. This analysis provided insight into the behavior of the plant’s current information control structure within the context of a specific, significant event. The second tool is Systems Theoretic Process Analysis (STPA) which is a proactive risk analysis tool used to examine existing and potential, planned sociotechnical systems. STPA was used to identify risk factors in the current design of a generic nuclear power plant (NPP) preventive maintenance system. Our analyses focused on identifying near-term system improvements and longer-term design requirements for an optimized IAE system. CAST analysis findings indicate an important underlying contributor to the incident under investigation, and a significant risk to information automation system performance, was perceived time and schedule pressure, which exposed weaknesses in interdepartmental coordination between and within responsible plant organizations and challenged the resilience of established plant processes, until a human caused the eventual event. These findings are discussed in terms of their risk to overall system performance and their implications for information automation system resilience and brittleness. STPA findings exposed several areas of concern in the design of current preventive maintenance systems. We also present two preliminary information automation models. The proactive issue resolution (PIR) model is a test case of an information automation concept with significant near-term potential for application and subsequent reduction in significant plant events. The IAE model is a more general representation of a broader, plantwide information automation system and represents an end-state vision for our work. From our results, we have generated an initial set of preliminary system-level requirements and safety constraints for these models. We have also focused on early development of easy to learn, easy to use “transportable” tools for sociotechnical systems analysis. We intend these to be used by NPP personnel as a means of gaining reliable and relatively quick insight into (1) sociotechnical systems factors impacting incidents and accidents, (2) potential sociotechnical risk factors in existing or planned system designs, and (3) potential weaknesses in a system’s safety and/or information control structure. We conclude the report with a set of summary recommendations, a discussion of planned and potential follow-on research and development, and a draft list of system-level requirements and safety constraints for optimized information automation systems.

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2024

Vegetation Warming Experiment: Landscape-scale digital camera imagery for vegetation phenology, Utqiagvik (Barrow), Alaska, 2018

Images captured using a StarDot NetCam SC phenocamera looking east from the top of the Barrow Environmental Observatory (BEO) Sled Shed, Utqiagvik, Alaska. The camera was installed to remotely monitor plant phenology and operation of the BNL TEST group's ZPW (Zero Power Warming) chambers during the growing season of 2018. Images were captured from early spring (13 April) through to mid fall (18 October). Snowmelt, vegetation growth and senescence, and snow accumulation were captured. Images were uploaded to the BNL FTP server every hour until 16 June, and then every 10 minutes. Files were renamed with the date and time of the image. jpg images have been compressed in *.tar.gz format (7.9 GB). Different fields of view (northeasterly) were also captured using 3 Wingscapes TimelapseCam cameras mounted on a mast on the sled shed. Images were recorded from 21 June to 24 September, 2018, at 30 minute intervals, from 11:00 - 14:30, Alaska daylight time (AKDT, UTC-8). Movie files (.mp4) of each Wingscapes camera dataset. Additional metadata included in *.pdf and *.csv files. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Remote sensing and statistical analysis of the effects of hurricane María on the forests of Puerto Rico

Widely recognized as one of the worst natural disaster in Puerto Rico's history, hurricane María made landfall on September 20, 2017 in southeast Puerto Rico as a high-end category 4 hurricane on the Saffir-Simpson scale causing widespread destruction, fatalities and forest disturbance. This study focused on hurricane María's effect on Puerto Rico's forests as well as the effect of landform and forest characteristics on observed disturbance patterns. In this work, we used Google Earth Engine (GEE) to assess the severity of forest disturbance using a disturbance metric based on Landsat 8 satellite data composites with pre and post-hurricane María. Forest structure, tree phenology characteristics, and landforms were obtained from satellite data products, including digital elevation model and global forest canopy height. Our analyses showed that forest structure, and characteristics such as forest age and forest type affected patterns of forest disturbance. Among forest types, highest disturbance values were found in sierra palm, transitional, and tall cloud forests; seasonal evergreen forests with coconut palm; and mangrove forests. For landforms, greatest disturbance metrics was found at high elevations, steeper slopes, and windward surfaces. As expected, high levels of disturbance were also found close to the hurricane track, with disturbance less severe as hurricane María moved inland. Results demonstrated that forest and landform characteristics accounted for 34% of the variation in spatial forest spectral disturbance patterns. This study demonstrated an informative regional approach, combining remote sensing with statistical analyses to investigate factors that result in variability in hurricane effects on forest ecosystems.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Vegetation Warming Experiment: Landscape-scale digital camera imagery for vegetation phenology, Utqiagvik, Alaska, 2021

Images captured using a StarDot NetCam SC phenocamera looking east from the top of the Barrow Environmental Observatory (BEO) Sled Shed, Utqiagvik, Alaska. The camera was installed to remotely monitor plant phenology and operation of the Brookhaven National Laboratory (BNL) TEST group's ZPW (Zero Power Warming) chambers during the growing season of 2021. Images were captured from early spring (1 April) through to mid fall (22 October). Snowmelt, vegetation growth and senescence, and snow accumulation were captured. Images were uploaded to the BNL FTP server every hour, then from 2021-07-09 images were recorded every 10 minutes until the end of data collection on 2021-10-22. Images have been combined in *.zip format (6.1 GB). Closer fields of view (northeasterly) were also captured using 4 Wingscapes TimelapseCam cameras mounted on a mast on the sled shed. These cameras were operated from 2021-06-19 to 2021-09-22, with images recorded every 30 minutes from 9:00 to 16:30 Alaska daylight time (AKDT, UTC-8). Individual jpg images from each camera have been combined in zip format. The data package includes a metadata document with example fields of view from each camera (*.pdf). The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Vegetation Warming Experiment: Landscape-scale digital camera imagery for vegetation phenology, Utqiagvik (Barrow), Alaska, 2019

Images captured using a StarDot NetCam SC phenocamera looking east from the top of the Barrow Environmental Observatory (BEO) Sled Shed, Utqiagvik, Alaska. The camera was installed to remotely monitor plant phenology and operation of the Brookhaven National Laboratory (BNL) TEST group's ZPW (Zero Power Warming) chambers during the growing season of 2019. Images were captured from early spring (4 April) through to mid fall (30 October). Snowmelt, vegetation growth and senescence, and snow accumulation were captured. Images were uploaded to the BNL FTP server every hour, then from 2019-06-27 to 2019-10-02 images were recorded every 10 minutes, then at hourly intervals until the end of data collection on 2019-10-30. Files were renamed with the date and time of the image. jpg images have been compressed in *.tar.gz format (5.6 GB). Closer fields of view (northeasterly) were also captured using 4 Wingscapes TimelapseCam cameras mounted on a mast on the sled shed. These cameras were operated from 2019-06-23 to 2019-09-25, with images recorded every 30 minutes from 9:00 to 16:30 Alaska daylight time (AKDT, UTC-8). Individual jpg images have been compressed in zip format for each camera and also presented as mp4 timelapse movies.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Arctic Soil Patterns Analogous to Fluid Instabilities: Supporting Data

This dataset characterizes solifluction lobe morphology and spatial patterns using pre-existing LiDAR-derived digital elevation models of 25 sites across Norway with accompanying long term climate data for each site. Data were collected as part of an effort to better understand controls on the formation of solifluction patterns and to test the idea that they are analogous to fluid instabilities. We also provide soil velocity profiles and estimates of effective viscosity from across the world, drawn from literature. They were collected to improve our understanding of the rheology of soliflucting soil. See this article for more information on the theoretical motivation behind this dataset see "Arctic soil patterns analogous to fluid instabilities" (Glade et al., 2021). Data files arranged in a hierarchy and include image files *.tif and *.png, GIS shapefiles and geopackages (*.gpkg), *.csv (with same file as *.xlsx), and *.py (Python scripts readable with a text editor). Files also bundled into *.zip files. Note (2021-10-20): unit corrections made on two files: RR.csv and snowfall.csv. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

RivGraph: Automatic extraction and analysis of river and delta channel network topology

River networks sustain life and landscapes by carrying and distributing water, sediment, and nutrients throughout ecosystems and communities. At the largest scale, river networks drain continents through tree-like tributary networks. At typically smaller scales, river deltas and braided rivers form loopy, complex distributary river networks via avulsions and bifurcations.In order to model flows through these networks or analyze network structure, the topology, or connectivity, of the network must be resolved. Additionally, morphologic properties of each river channel as well as the direction of flow through the channel inform how fluxes travel through the network’s channels. Riv Graphis a Python package that automates the extraction and characterization of river channel networks from a user-provided binary image, or mask, of a channel network (Fig. 1). Masks may be derived from (typically remotely-sensed) imagery, simulations, or even hand-drawn. RivGraph will create explicit representations of the channel network by resolving river centerlines as links, and junctions as nodes. Flow directions are solved for each link of the network without using auxiliary data, e.g., a digital elevation model (DEM). Morphologic properties are computed as well, including link lengths, widths, sinuosities, branching angles,and braiding indices. If provided,RivGraph will preserve georeferencing information of the mask and will export results as ESRI shapefiles, GeoJSONs, and GeoTIFFs for easy import into GIS software.RivGraph can also return extracted networks as networkx objects for convenient interfacing with the full-featured networkx package (Hagberg et al., 2008). Finally, RivGraph offers a suite of topologic metrics that were specifically designed for river channel network analysis (Tejedor et al., 2015b).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology

Abstract. Vegetation phenology plays a key role in controlling the seasonality of ecosystem processes that modulate carbon, water and energy fluxes between the biosphere and atmosphere. Accurate modelling of vegetation phenology in the interplay of Earth's surface and the atmosphere is thus crucial to understand how the coupled system will respond to and shape climatic changes. Phenology is controlled by meteorological conditions at different timescales: on the one hand, changes in key meteorological variables (temperature, water, radiation) can have immediate effects on the vegetation development; on the other hand, phenological changes can be driven by past environmental conditions, known as memory effects. However, the processes governing meteorological memory effects on phenology are not completely understood, resulting in their limited performance of vegetation phenology represented in land surface models. A deep learning model, specifically a long short-term memory network (LSTM), has the potential to capture and model the meteorological memory effects on vegetation phenology. Here, we apply the LSTM to model the vegetation phenology using meteorological drivers and high-temporal-resolution canopy greenness observations through digital repeat photography by the PhenoCam network. We compare a multiple linear regression model, a no-memory-effect LSTM model and a full-memory-effect LSTM model to predict the whole seasonal greenness trajectory and the corresponding phenological transition dates across 50 sites and 317 site years during 2009–2018, covering deciduous broadleaf forests, evergreen needleleaf forests and grasslands. Results show that the deep learning model outperforms the multiple linear regression model, and the full-memory-effect LSTM model performs better than the no-memory-effect model for all three plant function types (median R2 of 0.878, 0.957 and 0.955 for broadleaf forests, evergreen needleleaf forests and grasslands). We also find that the full-memory-effect LSTM model is capable of predicting the seasonal dynamic variations of canopy greenness and reproducing trends in shifting phenological transition dates. We also performed a sensitivity analysis of the full-memory-effect LSTM model to assess its plausibility, revealing its coherence with established knowledge of vegetation phenology sensitivity to meteorological conditions, particularly changes in temperature. Our study highlights that (1) multi-variate meteorological memory effects play a crucial role in vegetation phenology, and (2) deep learning opens up new avenues for improving the representation of vegetation phenological processes in land surface models via a hybrid modelling approach.

Geology↗