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DOE OSTI2023

What is microbial dormancy?

Life can be stressful. One way to deal with stress is to simply wait it out. Microbes do this by entering a state of reduced activity and increased resistance commonly called ‘dormancy’. But what is dormancy? Different scientific disciplines emphasize distinct traits and phenotypic ranges in defining dormancy for their microbial species and system-specific questions of interest. Here, we propose a unified definition of microbial dormancy, using a broad framework to place earlier discipline-specific definitions in a new context. We then discuss how this new definition and framework may improve our ability to investigate dormancy using multi-omics tools. Finally, we leverage our framework to discuss the diversity of genomic mechanisms for dormancy in an extreme environment that challenges easy definitions – the permafrost.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

QCD factorization with multihadron fragmentation functions

Important aspects of quantum chromodynamics (QCD) factorization theorems are the properties of the objects involved that can be identified as universal. One example is that the definitions of parton densities and fragmentation functions for different types of hadrons differ only in the identity of the nonperturbative states that form the matrix elements, but are otherwise the same. This leads to independence of perturbative calculations on nonperturbative details of external states. It also lends support to interpretations of correlation functions as encapsulations of intrinsic nonperturbative properties. These characteristics have usually been presumed to still hold true in fragmentation functions even when the observed nonperturbative state is a small-mass cluster of n hadrons rather than simply a single isolated hadron. However, the multidifferential aspect of cross sections that rely on these latter types of fragmentation functions complicates the treatment of kinematical approximations in factorization derivations. That has led to recent claims that the operator definitions for fragmentation functions need to be modified from the single hadron case with nonuniversal prefactors. With such concerns as our motivation, we retrace the steps for factorizing the unpolarized semi-inclusive e + e − annihilation cross section and confirm that they do apply without modification to the case of a small-mass multihadron observed in the final state. In particular, we verify that the standard operator definition from single hadron fragmentation, with its usual prefactor, remains equally valid for the small-mass n -hadron case with the same hard parts and evolution kernels, whereas the more recently proposed definitions with nonuniversal prefactors do not. Our results reaffirm the reliability of most past phenomenological applications of dihadron fragmentation functions. Published by the American Physical Society 2025

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2022

Practical jet flavour through NNLO

Abstract An infrared and collinear (IRC) safe definition of the partonic flavour of a jet is vital for precision predictions of quantum chromodynamics at colliders. Jet flavour definitions have been presented in the literature, but they are typically defined through modification of the jet algorithm to be sensitive to partonic flavour at every stage of the clustering. While this does ensure that the sum of flavours in a jet is IRC safe, a flavour-sensitive clustering procedure is difficult to apply to realistic data. We introduce a distinct and novel approach to jet flavour that can be applied to a collection of partons defined by any algorithm. Our definition of jet flavour is the sum of flavours of all partons that remain after Soft Drop grooming, reclustered with the "Image missing" <#comment/> algorithm. We prove that this prescription is IRC safe through next-to-next-to-leading order (NNLO), and so can interface with the most precise fixed-order calculations for jets available at present. We validate the IRC safety of this definition with numeric fixed-order codes and further show that jet flavour with Soft Drop reclustered with a generalised $$k_T$$ k T algorithm fails to be IRC safe at NNLO.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2026

Roadmap for the future of extreme wildfire events

Background Extreme wildfire events (EWEs) represent a growing threat globally, posing substantial risks to ecosystems, human communities, and infrastructure. Despite increased recognition of their ecological, social, and economic significance, current definitions of EWEs vary widely, reflecting disciplinary biases and regional contexts. This article emerges from an interdisciplinary workshop convened to reassess and refine the definition of EWEs, examine their impacts across ecological and social dimensions, and identify critical knowledge gaps impeding our understanding of these infrequent but important events. Results Our synthesis highlights significant limitations with existing definitions, particularly their reliance on subjective thresholds and their emphasis on extreme fire behavior alone. EWEs encompass a spectrum of complex, multi-dimensional phenomena that extend beyond immediate biophysical characteristics to include cumulative social, economic, and ecological impacts. These impacts often manifest over extended timeframes and include hazardous environmental contamination, severe geomorphic disturbances, ecosystem transformations, and unintended consequences of post-fire management actions. Current wildfire modeling frameworks inadequately capture these compounding factors, particularly the interactions among social systems, ecological conditions, and extreme fire behavior. To overcome these issues, we advocate for an interdisciplinary and context-sensitive approach to defining and studying EWEs. This revised definition emphasizes wildfires exhibiting anomalies in fire behavior, ecological outcomes, or social impacts relative to historically observed baselines, accommodating variability across different geographic regions and ecological settings. Conclusions Adopting an interdisciplinary framework that integrates biophysical and social sciences will enhance the predictive capability of wildfire models and improve resilience planning and response strategies. Filling identified knowledge gaps—such as limited high-quality empirical fire behavior data and insufficient integration of social dynamics into modeling—will better prepare communities and ecosystems to cope with and adapt to EWEs. This inclusive approach underscores the necessity for collaboration across disciplines and sectors, essential to managing extreme wildfires in an era of increasing climatic and ecological uncertainty.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Storage Futures Study: The Challenge of Defining Long-Duration Energy Storage

This document explores the definition of "long duration" as applied to energy storage. Given the growing use of this term, a uniform definition could aid in communication and consistency among various stakeholders. There is large and growing use of the ARPA-E definition of greater than 10 hours. However, the term "long-duration energy storage" is often used as shorthand for storage with sufficient duration to provide firm capacity and support grid resource adequacy. The actual duration needed for this application varies significantly from as little as a few hours to potentially multiple days. This leads to the unsatisfying conclusion that there cannot be a simple, uniform, and static definition of long duration storage that captures its ability to provide firm capacity and also aids consistent communication.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2023

Technical Report on Waveform Fit Metrics for Global Models

The new WAVEFORMS Initiative in the Ground-based Nuclear Detonation Detection (GNDD) program includes an increased emphasis on the development of Earth models and methods to predict entire seismic and acoustic waveforms more accurately. In general, this increased emphasis is predicated on the need to better characterize seismic events and provide improved model-based discrimination between event types including earthquakes and explosions. More specifically, while current moment tensor inversion methods tend to work well for larger events (M>~4) using tuned 1-D Earth models, the development of state-of-the-art 3-D models and methods is required for the prediction of shorter period waves over large areas for discrimination of smaller events. There is no standard metric for model-based waveform prediction accuracy used in the waveform modeling/inversion community. However, there are several popular waveform misfit definitions; and minimizing the corresponding objective functions is the goal of waveform inversion. Some example misfit definitions employed for adjoint waveform tomography include measures of simple travel time differences (e.g. Tape et al., 2010), cross-correlation travel time differences (e.g. Luo and Schuster, 1991), multi-taper frequency dependent methods (e.g. Lei et al., 2020), time-frequency phase misfit functions (e.g. Fichtner 2010; Rodgers et al., 2022), normalized cross-correlation methods (e.g. Tao et al., 2018), and others. In some cases, these misfit definitions also involve complicated weighting schemes and summations over multiple frequency bands making it difficult to duplicate the misfit measurement with alternative models and datasets. Although each of the misfit definitions mentioned above are useful for developing waveform models, the actual misfit values are not usually meaningful outside of a given project, model, and/or dataset. Therefore, it is difficult to understand and communicate model performance for predicting waveforms and comparing to other models and/or new model iterations with a different dataset. Therefore, there is a need for a generalized method for evaluating overall model performance that is independent from the specific misfit chosen to develop the waveform models that is also intuitive and meaningful. In this report, we describe a new metric we refer to as ‘Percent of Correlated Signal’. The following sections describe and demonstrate the metric with a case study event and a more rigorous test using a random selection of globally distributed events. While the focus here is on global tomography models, the metric is meant to applicable to regional ‘wiggle-for-wiggle’ waveform models/studies as well.

58 GEOSCIENCES↗

DOE OSTI2025

Representing lateral groundwater flow from land to river in Earth system models

Lateral groundwater flow (LGF) is an important hydrologic process in controlling water table dynamics. Due to the relatively coarse spatial resolutions of land surface models, the representation of this process is often overlooked or overly simplified. In this study, we developed a hillslope-based lateral groundwater flow model. Specifically, we first developed a hillslope definition model based on an existing watershed delineation model to represent the subgrid spatial variability in topography. Building upon this hillslope definition, we then developed a physical-based lateral groundwater flow using Darcy’s equation. This model explicitly considers the relationships between the groundwater table along the hillslope and the river water table levels. We coupled this intra-grid model to the land component (E3SM Land Model: ELM) and river component (MOdel for Scale Adaptive River Transport: MOSART) of the Energy Exascale Earth System Model (E3SM). We tested both the hillslope definition model and the lateral groundwater flow model and performed sensitivity experiments using different configurations. Simulations for a single grid cell at 0.5°×0.5° within the Amazon basin show that the definition of hillslope is the key to modeling lateral flow processes and the runoff partition between surface and subsurface can be dramatically changed using the hillslope approach. Although our method provides a pathway to improve the lateral flow process, future improvements are needed to better capture the subgrid structure to account for the spatial variability in hillslopes within the simulated grid of land surface models.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

WRF-simulated low-level jets over Iowa: characterization and sensitivity studies

Abstract. Output from 6 months of high-resolution simulations with the Weather Research and Forecasting (WRF) model are analyzed to characterize local low-level jets (LLJs) over Iowa for winter and spring in the contemporary climate. Low-level jets affect rotor plane aerodynamic loading, turbine structural loading and turbine performance, and thus accurate characterization and identification are pertinent. Analyses using a detection algorithm wherein the wind speed above and below the jet maximum must be below 80 % of the jet wind speed within a vertical window of approximately 20–530 m a.g.l. (above ground level) indicate the presence of an LLJ in at least one of the 14 700 4 km×4 km grid cells over Iowa on 98 % of nights. Nocturnal LLJs are most frequently associated with stable stratification and low turbulent kinetic energy (TKE) and hence are more frequent during the winter months. The spatiotemporal mean LLJ maximum (jet core) wind speed is 9.55 m s−1, and the mean height is 182 m. Locations of high LLJ frequency and duration across the state are seasonally varying, with a mean duration of 3.5 h. The highest frequency occurs in the topographically complex northwest of the state in winter and in the flatter northeast of the state in spring. Sensitivity of LLJ characteristics to the (i) LLJ definition and (ii) vertical resolution at which the WRF output is sampled is examined. LLJ definitions commonly used in the literature are considered in the first sensitivity analysis. These sensitivity analyses indicate that LLJ characteristics are highly variable with definition. Use of different definitions identifies both different frequencies of LLJs and different LLJ events. Further, when the model output is down-sampled to lower vertical resolution, the mean jet core wind speed height decreases, but spatial distributions of regions of high frequency and duration are conserved. Implementation of a polynomial interpolation to extrapolate down-sampled output to full-resolution results in reduced sensitivity of LLJ characteristics to down-sampling.

17 WIND ENERGY↗

DOE OSTI2026

RCSB protein data Bank: Next‐generation advanced search for exploration of experimental structures and computed structure models

Abstract The Protein Data Bank (PDB), established in 1971, is the primary global, open‐access archive for experimentally determined 3D macromolecular structures (proteins, RNA, DNA). The research‐focused RCSB.org web‐portal provides access to these data alongside more than one million machine‐learning‐predicted structure models, greatly expanding the available structural landscape. Rapid growth of both experimental and computational structures has increased the need for powerful yet accessible search tools that serve a broad and diverse scientific community. Herein, we describe a redesigned RCSB Protein Data Bank RCSB.org Advanced Search capability that supports intuitive discovery of 3D structures through a unified interface. This interface integrates annotation‐, sequence‐, and 3D structure‐based searches, embeds an interactive 3D viewer, and incorporates curated biological knowledge, such as catalytic site definitions from Mechanism and Catalytic Site Atlas and ligand‐guided structural motifs, for constructing geometry‐driven queries. A new Chemical Search tool allows definition of chemical queries via an integrated drawing tool or standard identifiers, seamlessly combining them with annotation filters. By allowing query definition directly within spatial and chemical contexts, these search interfaces reduce the need for detailed knowledge of residue numbering, chain identifiers, or external cheminformatics software. This capability enables efficient exploration of structures, chemical diversity, and structure–function relationships across all life domains. The redesigned interfaces can be accessed directly at rcsb.org/search/advanced for Advanced Search and rcsb.org/search/chemical for Chemical Search.

Rose, Yana [Research Collaboratory for Structural ↗

DOE OSTI2022

Jet timing

The measurement of the arrival time of a particle, such as a lepton, a photon, or a pion, reaching the detector provides valuable information. A similar measurement for a hadronic final state, however, is much more challenging as one has to extract the relevant information from a collection of particles. In this paper, we explore various possibilities in defining the time of a jet through the measurable arrival times of the jet constituents. We find that a definition of jet time based on a transverse momentum weighted sum of the times of the constituents has the best performance. For prompt jets, the performance depends on the jet trajectory. For delayed jets, the performance depends on the trajectory of the jet, the trajectory of the mother particle, and the location of the displaced vertex. Compared to the next-best-performing jet time definition, the transverse momentum weighted sum has roughly a factor of ten times better jet time resolution. We give a detailed discussion of the relevant effects and characterize the full geometrical dependence of the performance. These results highlight the critical importance of using a proper definition of jet time with its corresponding detector-dependent calibration and the exciting possibility of deepening our understanding of jets in the time domain.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2022

A fragmentation approach to jet flavor

An intuitive definition of the partonic flavor of a jet in quantum chromodynamics is often only well-defined in the deep ultraviolet, where the strong force becomes a free theory and a jet consists of a single parton. However, measurements are performed in the infrared, where a jet consists of numerous particles and requires an algorithmic procedure to define their phase space boundaries. To connect these two regimes, we introduce a novel and simple partonic jet flavor definition in the infrared. We define the jet flavor to be the net flavor of the partons that lie exactly along the direction of the Winner-Take-All recombination scheme axis of the jet, which is safe to all orders under emissions of soft particles, but is not collinear safe. Collinear divergences can be absorbed into a perturbative fragmentation function that describes the evolution of the jet flavor from the ultraviolet to the infrared. The evolution equations are linear and a small modification to traditional DGLAP and we solve them to leading-logarithmic accuracy. The evolution equations exhibit fixed points in the deep infrared, we demonstrate quantitative agreement with parton shower simulations, and we present various infrared and collinear safe observables that are sensitive to this flavor definition.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2022

Epistemology of voltage control in DER-rich power system

Despite the recent development of several scalable, robust, and resilient control approaches with superior convergence properties considering an increasing penetration of distributed energy resources (DERs), cognitive oversights often simplify several aspects of the cyber–physical power system in the controller development. Here, following the identification of the limitations of classical controller definitions, we justify alternative definitions of voltage control approaches classifiers considering three inter-disciplinary domains: (i) power system, (ii) optimization and decision-making, and (iii) networking and cyber-security, to develop a taxonomy for helping in real-world comparative performance analysis and deployability of these controllers. We observe that classical and introduced domain-based definitions together can better classify the control algorithms.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2025

Quantum complexity in gravity, quantum field theory, and quantum information science

Quantum complexity quantifies the difficulty of preparing a state or implementing a unitary transformation with limited resources. Applications range from quantum computation to condensed matter physics and quantum gravity. Here, we seek to bridge the approaches of these fields, which define and study complexity using different frameworks and tools. We describe several definitions of complexity, along with their key properties. In quantum information theory, we focus on complexity growth in random quantum circuits. In quantum many-body systems and quantum field theory (QFT), we discuss a geometric definition of complexity in terms of geodesics on the unitary group. In dynamical systems, we explore a definition of complexity in terms of state or operator spreading, as well as concepts from tensor-networks. We also outline applications to simple quantum systems, quantum many-body models, and QFTs including conformal field theories (CFTs). Finally, we explain the proposed relationship between complexity and gravitational observables within the holographic anti-de Sitter (AdS)/CFT correspondence.

Baiguera, Stefano [Istituto Nazionale di Fisica Nu↗

DOE OSTI2024

Coherence in Chemistry: Foundations and Frontiers

Coherence refers to correlations in waves. Because matter has a wave-particle nature, it is unsurprising that coherence has deep connections with the most contemporary issues in chemistry research (e.g., energy harvesting, femtosecond spectroscopy, molecular qubits and more). But what does the word "coherence" really mean in the context of molecules and other quantum systems? We provide a review of key concepts, definitions, and methodologies, surrounding coherence phenomena in chemistry, and we describe how the terms "coherence" and "quantum coherence" refer to many different phenomena in chemistry. Moreover, we show how these notions are related to the concept of an interference pattern. Coherence phenomena are indeed complex, and ambiguous definitions may spawn confusion. By describing the many definitions and contexts for coherence in the molecular sciences, we aim to enhance understanding and communication in this broad and active area of chemistry.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2025

Remote Sensing Improves Multi‐Hazard Flooding and Extreme Heat Detection by Fivefold Over Current Estimates

The co‐occurrence of multiple hazards is of growing concern globally as the frequency and magnitude of extreme climate events increases. Despite studies examining the spatial distribution of such events, there has been little work in examining if all relevant life threatening and damaging hazards are captured in existing hazard databases and by common hazard metrics. For example, local/regional flash flooding events are seldom captured by optical satellite instruments and are subsequently excluded from global hazard databases. Similarly, the heat hazard definitions most frequently used in multi‐hazard studies inherently fail to capture events that are life‐threatening but climatologically within an expected range. Our goal is to determine the potential for increasing multi‐hazard event detection capabilities by inferring additional hazard footprints from widely accessible satellite data. We use daily precipitation and temperature satellite data to develop an open‐source framework that infers additional hazard footprints that are not included in traditional methods. With the state of Texas as our study area, we detected 2.5 times as many flood hazards, equivalent to $320 million in property and crop damages. Furthermore, our expanded heat hazard definition increases the impacted area by 56.6%, equivalent to 91.5 million km 2 over an 18 year period. Increasing hazard detection capabilities and expanding existing definitions of hazards using daily satellite data increases the temporal and spatial resolutions at which multi‐hazard events are detected. Having more complete data sets of all relevant hazard extents improves our ability to track global trends and more accurately determine the magnitude of hazard exposure inequities.

equity↗

DOE OSTI2021

Deep Bayesian local crystallography

Abstract The advent of high-resolution electron and scanning probe microscopy imaging has opened the floodgates for acquiring atomically resolved images of bulk materials, 2D materials, and surfaces. This plethora of data contains an immense volume of information on materials structures, structural distortions, and physical functionalities. Harnessing this knowledge regarding local physical phenomena necessitates the development of the mathematical frameworks for extraction of relevant information. However, the analysis of atomically resolved images is often based on the adaptation of concepts from macroscopic physics, notably translational and point group symmetries and symmetry lowering phenomena. Here, we explore the bottom-up definition of structural units and symmetry in atomically resolved data using a Bayesian framework. We demonstrate the need for a Bayesian definition of symmetry using a simple toy model and demonstrate how this definition can be extended to the experimental data using deep learning networks in a Bayesian setting, namely rotationally invariant variational autoencoders.

36 MATERIALS SCIENCE↗

DOE OSTI2020

Machine learning prediction of incidence of Alzheimer’s disease using large-scale administrative health data

Nationwide population-based cohort provides a new opportunity to build an automated risk prediction model based on individuals’ history of health and healthcare beyond existing risk prediction models. We tested the possibility of machine learning models to predict future incidence of Alzheimer’s disease (AD) using large-scale administrative health data. From the Korean National Health Insurance Service database between 2002 and 2010, we obtained de-identified health data in elders above 65 years (N = 40,736) containing 4,894 unique clinical features including ICD-10 codes, medication codes, laboratory values, history of personal and family illness and socio-demographics. To define incident AD we considered two operational definitions: “definite AD” with diagnostic codes and dementia medication (n = 614) and “probable AD” with only diagnosis (n = 2026). We trained and validated random forest, support vector machine and logistic regression to predict incident AD in 1, 2, 3, and 4 subsequent years. For predicting future incidence of AD in balanced samples (bootstrapping), the machine learning models showed reasonable performance in 1-year prediction with AUC of 0.775 and 0.759, based on “definite AD” and “probable AD” outcomes, respectively; in 2-year, 0.730 and 0.693; in 3-year, 0.677 and 0.644; in 4-year, 0.725 and 0.683. The results were similar when the entire (unbalanced) samples were used. Important clinical features selected in logistic regression included hemoglobin level, age and urine protein level. This study may shed a light on the utility of the data-driven machine learning model based on large-scale administrative health data in AD risk prediction, which may enable better selection of individuals at risk for AD in clinical trials or early detection in clinical settings.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2024

The shape of convection in 2D and 3D global simulations of stellar interiors

Context. Theoretical descriptions of convective overshooting in stellar interiors often rely on a basic one-dimensional parameterization of the flow called the filling factor for convection. Several different definitions of the filling factor have been developed for this purpose, based on: (1) the percentage of the volume, (2) the mass flux, and (3) the convective flux that moves through the boundary. Aims. We examine these definitions of the filling factor with the goal of establishing their ability to explain differences between 2D and 3D global simulations of stellar interiors that include fully compressible hydrodynamics and realistic microphysics for stars. Methods. We study convection and overshooting in pairs of identical two-dimensional (2D) and three-dimensional (3D) global simulations of stars produced with MUSIC , a fully compressible, time-implicit hydrodynamics code. We examine pairs of simulations for (1) a 3 M ⊙ red giant star near the first dredge-up point, (2) a 1 M ⊙ pre-main-sequence star with a large convection zone, (3) the current sun, and (4) a 20 M ⊙ main-sequence star with a large convective core. Results. Our calculations of the filling factor based on the volume percentage and the mass flux indicate asymmetrical convection near the surface for each star with an outer convection zone. However, near the convective boundary, convective flows achieve inward-outward symmetry for each star that we study; for 2D and 3D simulations, these filling factors are indistinguishable. A filling factor based on the convective flux is contaminated by boundary-layer-like flows, making a theoretical interpretation difficult. We present two possible new alternatives to these frequently used definitions of a filling factor, which instead compare flows at two different radial points. The first alternative is the penetration parameter of Anders et al. (2022, ApJ, 926, 169). The second alternative is a new statistic that we call the plume interaction parameter. We demonstrate that both of these parameters captures systematic differences between 2D and 3D simulations around the convective boundary.

79 ASTRONOMY AND ASTROPHYSICS↗