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At least 1,243 records · Page 69

PPI DataHub Project Data Package: S. elongatus PCC 7942 Limited Proteolysis and Thermal Proteome Profiling Structural Proteomics (JM-PB-DP3)

The purpose of this experiment was to investigate structural alterations in proteins involved in central carbon metabolism and photosynthetic electron transfer pathways in Synechococcus elongatus PCC 7942. Sample data was obtained from S. elongatus cell lysates using three complementary mass spectrometry (MS) techniques using limited proteolysis (LiP-MS), thermal proteome profiling (TPP-MS), and redox enrichment (Redox-MS) in evaluating alterations solvent accessibility and structural stability caused by light perturbation at the molecular level. Experimentally processed sample data for LiP and TPP proteomic datasets were derived from the same cell culture stock, prepared simultaneously in parallel, and acquired by mass spectrometry. Processed datasets are openly accessible from the download button and contain secondary processed proteomic results files, computed outputs, and supporting metadata materials. Experimental samples processed for LiP-MS label-free quantification (LFQ) or TPP-MS tandem mass tag (TMT) 10-plex were acquired using a Q-Exactive HF-X mass spectrometer and processed/compiled using either MSGF+ (v2024.03.26) or ​​​​PlexedPiper for proteome evaluation. Additional software supporting downstream proteomic analysis include FragPipe (v.4.0), MSFragger (v.22.1), and an adapted Microbial Isolate LiP Analysis Workflow (located at Zenodo). Processed proteomic data downloads include a sample naming key, normalized quantification results files, and processed protein annotated abundance files.

59 BASIC BIOLOGICAL SCIENCES↗

Comparison of Sub-Ppm Instrument Response Suggests Higher Detection Limits Could Be Used to Quantify Methane Emissions from Oil and Gas Infrastructure

Quantifying and controlling fugitive methane emissions from oil and gas facilities remains essential for addressing climate goals, but the costs associated with monitoring millions of production sites remain prohibitively expensive. Current thinking, supported by measurement and simple dispersion modelling, assumes single-digit parts-per-million instrumentation is required. To investigate instrument response, the inlets of three trace-methane (sub-ppm) analyzers were collocated on a facility designed to release gas of known composition at known flow rates between 0.4 and 5.2 kg CH 4 h –1 from simulated oil and gas infrastructure. Methane mixing ratios were measured by each instrument at 1 Hertz resolution over nine hours. While mixing ratios reported by a cavity ring-down spectrometer (CRDS)-based instrument were on average 10.0 ppm (range 1.8 to 83 ppm), a mid-infrared laser absorption spectroscopy (MIRA)-based instrument reported short-lived mixing ratios far larger than expected (range 1.8 to 779 ppm) with a similar nine-hour average to the CRDS (10.1 ppm). We suggest the peaks detected by the MIRA are likely caused by a micrometeorological phenomenon, where vortex shedding has resulted in heterogeneous methane plumes which only the MIRA can observe. Further analysis suggests an instrument like the MIRA (an optical-cavity-based instrument with cavity size ≤10 cm3 measuring at ≥2 Hz with air flow rates in the order of ≤0.3 slpm at distances of ≤20 m from the source) but with a higher detection limit (25 ppm) could detect enough of the high-concentration events to generate representative 20 min-average methane mixing ratios. Even though development of a lower-cost, high-precision, high-accuracy instrument with a 25 ppm detection threshold remains a significant problem, this has implications for the use of instrumentation with higher detection thresholds, resulting in the reduction in cost to measure methane emissions and providing a mechanism for the widespread deployment of effective leak detection and repair programs for all oil and gas infrastructure.

03 NATURAL GAS↗

Cosmic Reionization on Computers: Statistics, Physical Properties, and Environments of Lyman Limit Systems at z ~ 6

Lyman limit systems (LLSs) are dense hydrogen clouds with high enough H i column densities to absorb Lyman continuum photons emitted from distant quasars. Their high column densities imply an origin in dense environments; however, the statistics and distribution of LLSs at high redshifts still remain uncertain. In this paper, we use self-consistent radiative transfer cosmological simulations from the Cosmic Reionization on Computers (CROC) project to study the physical properties of LLSs at the tail end of cosmic reionization at z ~ 6. We generate 3000 synthetic quasar sight lines to obtain a large number of LLS samples in the simulations. In addition, with the high physical fidelity and resolution of CROC, we are able to quantify the association between these LLS samples and nearby galaxies. Our results show that the fraction of LLSs spatially associated with nearby galaxies increases with H i column density. Moreover, we find that LLSs that are not near any galaxy typically reside in filamentary structures connecting neighboring galaxies in the intergalactic medium (IGM). This quantification of the distribution and association of LLSs to large-scale structure informs our understanding of the IGM–galaxy connection during the "Epoch of Reionization," and provides a theoretical basis for interpreting future observations.

79 ASTRONOMY AND ASTROPHYSICS↗

Mean-field limit of a hybrid system for multi-lane car-truck traffic

In the present work we model multi-lane traffic flow in presence of two population of vehicles: cars and trucks. We first develop a finite-dimensional hybrid system which rely on continuous Bando-Follow-the-Leader dynamics coupled with discrete events motivated by the lane-change maneuvers. Then we rigorously prove that the mean-field limit is given by a system of Vlasov-type PDE with source terms generated by the lane-change maneuvers of the human-driven vehicles.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Force limits measured on a space shuttle flight

The random vibration forces between a payload and the sidewall of the space shuttle have been measured in flight and compared with the force specifications used in ground vibration tests. The flight data are in agreement with a semi-empirical method, which is widely used to predict vibration test force limits.

force limiting vibration tests↗

Research Problems Associated with Limiting the Applied Force in Vibration Tests and Conducting Base-Drive Modal Vibration Tests

The intent of this paper is to make a case for developing and conducting vibration tests which are both realistic and practical (a question of tailoring versus standards). Tests are essential for finding things overlooked in the analyses. The best test is often the most realistic test which can be conducted within the cost and budget constraints. Some standards are essential, but the author believes more in the individual's ingenuity to solve a specific problem than in the application of standards which reduce problems (and technology) to their lowest common denominator. Force limited vibration tests and base-drive modal tests are two examples of realistic, but practical testing approaches. Since both of these approaches are relatively new, a number of interesting research problems exist, and these are emphasized herein.

tests tailored tests cost analysis↗

Aerodynamic Limits on Large Civil Tiltrotor Sizing and Efficiency

The NASA Large Civil Tiltrotor (2nd generation, or LCTR2) has been the reference design for avariety of NASA studies of design optimization, engine and gearbox technology, handling qualities, andother areas, with contributions from NASA Ames, Glenn and Langley Centers, plus academic and industrystudies. Ongoing work includes airfoil design, 3D blade optimization, engine technology studies, andwingrotor aerodynamic interference. The proposed paper will bring the design up to date with the latestresults of such studies, then explore the limits of what aerodynamic improvements might hope toaccomplish. The purpose is two-fold: 1) determine where future technology studies might have the greatestpayoff, and 2) establish a stronger basis of comparison for studies of other vehicle configurations andmissions.

Large Civil Tiltrotor↗