Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “dynamical core”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,243 records · Page 69
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Angle between DNA linker and nucleosome core particle regulates array compaction revealed by individual-particle cryo-electron tomography

Abstract The conformational dynamics of nucleosome arrays generate a diverse spectrum of microscopic states, posing challenges to their structural determination. Leveraging cryogenic electron tomography (cryo-ET), we determine the three-dimensional (3D) structures of individual mononucleosomes and arrays comprising di-, tri-, and tetranucleosomes. By slowing the rate of condensation through a reduction in ionic strength, we probe the intra-array structural transitions that precede inter-array interactions and liquid droplet formation. Under these conditions, the arrays exhibite irregular zig-zag conformations with loose packing. Increasing the ionic strength promoted intra-array compaction, yet we do not observe the previously reported regular 30-nanometer fibers. Interestingly, the presence of H1 do not induce array compaction; instead, one-third of the arrays display nucleosomes invaded by foreign DNA, suggesting an alternative role for H1 in chromatin network construction. We also find that the crucial parameter determining the structure adopted by chromatin arrays is the angle between the entry and exit of the DNA and the corresponding tangents to the nucleosomal disc. Our results provide insights into the initial stages of intra-array compaction, a critical precursor to condensation in the regulation of chromatin organization.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Multigrid Reduction in Time for Chaotic Dynamical Systems

As CPU clock speeds have stagnated and high performance computers continue to have ever higher core counts, increased parallelism is needed to take advantage of these new architectures. Traditional serial time-marching schemes can be a significant bottleneck, as many types of simulations require large numbers of time-steps which must be computed sequentially. Parallel-in-time schemes, such as the Multigrid Reduction in Time (MGRIT) method, remedy this by parallelizing across time-steps and have shown promising results for parabolic problems. However, chaotic problems have proved more difficult, since chaotic initial value problems (IVPs) are inherently ill-conditioned. MGRIT relies on a hierarchy of successively coarser time-grids to iteratively correct the solution on the finest time-grid, but due to the nature of chaotic systems, small inaccuracies on the coarser levels can be greatly magnified and lead to poor coarse-grid corrections. Here we introduce a modified MGRIT algorithm based on an existing quadratically converging nonlinear extension to the multigrid Full Approximation Scheme (FAS), as well as a novel time-coarsening scheme. Together, these approaches better capture long-term chaotic behavior on coarse-grids and greatly improve convergence of MGRIT for chaotic IVPs. Further, we introduce a novel low-memory variant of the algorithm for solving chaotic PDEs with MGRIT which not only solves the IVP, but also provides estimates for the unstable Lyapunov vectors of the system. Finally, we provide supporting numerical results for the Lorenz system and demonstrate parallel speedup for the chaotic Kuramoto–Sivashinsky PDE over a significantly longer time-domain than in previous works.

97 MATHEMATICS AND COMPUTING↗
NASA NTRS2017

Dust Infall Onto Phobos and Deimos Can Explain Their Carbonaceous Reflectance Signature, Perhaps Overlying a Mars-Impact-Origin Core: A Hypothesis

Discussions of Phobos' and Deimos' (henceforth P&D) origin(s) include an unresolved conflict: dynamical studies which favor coalescence of the moons from a large impact on Mars [1,2], versus reflectance spectroscopy of the moons showing a carbonaceous composition that is not consistent with martian surface materials [3-5]. One way to reconcile this discrepancy is to consider the combined options of a Mars impact origin for Phobos and Deimos, followed by deposition of carbon-rich materials by interplanetary dust particle (IDP) infall. This is significant because, unlike asteroidal bodies, P&D experience a high IDP flux due to their location in Mars' gravity well. We present some relatively simple, initial calculations which indicate that accreted carbon may be sufficient to produce a surface with sufficient added carbon to account for P&D's reflectance spectra. If this is true, then a major objection to an impact origin for P&D is resolved.

Fries, M.↗
DOE OSTI2015

IN-SYNC. II. VIRIAL STARS FROM SUBVIRIAL CORES—THE VELOCITY DISPERSION OF EMBEDDED PRE-MAIN-SEQUENCE STARS IN NGC 1333

The initial velocity dispersion of newborn stars is a major unconstrained aspect of star formation theory. Using near-infrared spectra obtained with the APOGEE spectrograph, we show that the velocity dispersion of young (1-2 Myr) stars in NGC 1333 is 0.92 ± 0.12 km s{sup –1} after correcting for measurement uncertainties and the effect of binaries. This velocity dispersion is consistent with the virial velocity of the region and the diffuse gas velocity dispersion, but significantly larger than the velocity dispersion of the dense, star-forming cores, which have a subvirial velocity dispersion of 0.5 km s{sup –1}. Since the NGC 1333 cluster is dynamically young and deeply embedded, this measurement provides a strong constraint on the initial velocity dispersion of newly formed stars. We propose that the difference in velocity dispersion between stars and dense cores may be due to the influence of a 70 μG magnetic field acting on the dense cores or be the signature of a cluster with initial substructure undergoing global collapse.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

The hTERT core promoter forms three parallel G-quadruplexes

The structure of the 68 nt sequence with G-quadruplex forming potential within the hTERT promoter is disputed. One model features a structure with three stacked parallel G-quadruplex units, while another features an unusual duplex hairpin structure adjoined to two stacked parallel and antiparallel quadruplexes. We report here the results of an integrated structural biology study designed to distinguish between these possibilities. As part of our study, we designed a sequence with an optimized hairpin structure and show that its biophysical and biochemical properties are inconsistent with the structure formed by the hTERT wild-type sequence. By using circular dichroism, thermal denaturation, nuclear magnetic resonance spectroscopy, analytical ultracentrifugation, small-angle X-ray scattering, molecular dynamics simulations and a DNase I cleavage assay we found that the wild type hTERT core promoter folds into a stacked, three-parallel G-quadruplex structure. The hairpin structure is inconsistent with all of our experimental data obtained with the wild-type sequence. All-atom models for both structures were constructed using molecular dynamics simulations. These models accurately predicted the experimental hydrodynamic properties measured for each structure. We found with certainty that the wild-type hTERT promoter sequence does not form a hairpin structure in solution, but rather folds into a compact stacked three-G-quadruplex conformation.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Measuring the melting curve of iron at super-Earth core conditions

The discovery of more than 4500 extrasolar planets has created a need for modeling their interior structure and dynamics. Given the prominence of iron in planetary interiors, we require accurate and precise physical properties at extreme pressure and temperature. A first-order property of iron is its melting point, which is still debated for the conditions of Earth’s interior. Here, we used high-energy lasers at the National Ignition Facility and in situ x-ray diffraction to determine the melting point of iron up to 1000 gigapascals, three times the pressure of Earth’s inner core. We used this melting curve to determine the length of dynamo action during core solidification to the hexagonal close-packed (hcp) structure. We find that terrestrial exoplanets with four to six times Earth’s mass have the longest dynamos, which provide important shielding against cosmic radiation.

58 GEOSCIENCES↗
DOE OSTI2015

Ab initio phonon‐coupled nonadiabatic relaxation dynamics of [Au 25 (SH) 18 ] − clusters

Nanoscale gold clusters exhibit unique electronic and optical properties. Here, we study the excited state dynamics and electron–phonon coupling of [Au 25 (SH) 18 ] – nanoclusters by using quantum‐classical molecular dynamics combined with time‐dependent density‐functional theory. Our result reproduces the experimental measurements and provides further insights into the relaxation dynamics of ligand protected gold clusters. We examine the ultrafast electronic dynamics induced by specific phonon modes. The roles of the Au 13 core and Au 12 ring in the optical process are investigated. We find that the LUMO–HOMO transition is dominated by AuAu stretching of the Au 13 core, whereas the LUMO + 1 − HOMO transition is induced by breathing vibrations of the Au core as well as AuS stretching. We clarify the interplay between electron–phonon couplings and specific energy‐transfer processes in [Au 25 (SH) 18 ] – nanoclusters.

Chen, Xue↗
DOE OSTI2025

Hydride Migration within RhH 2 Ag 19 Superatom: A Combined Neutron Diffraction and DFT Analysis

Abstract An investigation combining neutron diffraction and DFT allows determining the most likely hydride migration pathway within the icosahedral metal framework of [RhH 2 Ag 19 {S 2 P(O n Pr) 2 } 12 ] (RhH 2 Ag 19 ). Starting from the experimentally derived solid‐state structures, a computational analysis is able to reveal an energetically favorable migration pathway with a maximum energy barrier of 4.2 kcal mol −1 . The two hydrides migrate simultaneously within the Rh@Ag 12 icosahedral core, traversing several positional isomers. This study expands the understanding of hydride dynamics in nanoclusters and provides critical insights into the structural flexibility of the superatom framework. These findings have significant implications for hydrogen storage, catalysis, and the design of advanced hydride‐containing materials.

Chemistry↗
DOE OSTI2018

Bacterial endophyte communities in Pinus flexilis are structured by host age, tissue type, and environmental factors

Background and aims: Forest tree microbiomes are vital to forest dynamics, diversity, and ecosystem processes. Mature limber pines ( Pinus flexilis ) host a core microbiome of acetic acid bacteria in their foliage, but the bacterial endophyte community structure, variation, and assembly across tree ontogeny is unknown. The aims of this research were to test if the core microbiome observed in adult P. flexilis is established at the seedling stage, if seedlings host different endophyte communities in root and shoot tissues, and how environmental factors structure seedling endophyte communities. Methods: The 16S rRNA gene was sequenced to characterize the bacterial endophyte communities in roots and shoots of P. flexilis seedlings grown in plots at three elevations at Niwot Ridge, Colorado, subjected to experimental treatments (watering and heating). The data was compared to previously sequenced endophyte communities from adult tree foliage sampled in the same year and location. Results: Seedling shoots hosted a different core microbiome than adult tree foliage and were dominated by a few OTUs in the family Oxalobacteraceae , identical or closely related to strains with antifungal activity. Shoot and root communities significantly differed from each other but shared major OTUs. Watering but not warming restructured the seedling endophyte communities. Conclusions: The results indicate differences in assembly and ecological function across conifer life stages. Seedlings may recruit endophytes to protect against fungi under increased soil moisture.

16S rRNA↗
DOE OSTI2024

Acoustic and electrical properties of Fe-Ti oxides with application to the deep lunar mantle

The overturn of titanium-rich mantle cumulates has been invoked to explain the structure and dynamics of the Moon. These dense cumulates are stable at the core-mantle boundary (CMB) and could explain field observations inferred from geophysical studies. Here, we report acoustic and electrical experiments on natural ilmenite-rutile aggregates up to 4.5 GPa and 1920 K. Seismic velocities show a weak pressure and temperature dependence, with Vs ~ 4.2 (+/-0.2) km/s and Vp ~8.0 (+/-0.2) km/s at the CMB conditions. Conductivity increases by a factor of 10 4 from 373 to 1920 K and is >10(3) S/m above 1573 K. Seismic and electrical models for the lunar mantle based on our results, considering mixtures of Fe-Ti oxides and olivine, indicate that field velocity and conductivity estimates are reproduced satisfactorily with 3-16 vol.% Fe-Ti oxides and 20 vol.% melt. Interactions between a Ti-rich, melt-bearing layer and the adjacent core likely affect the cooling and magnetic history of the Moon.

58 GEOSCIENCES↗
DOE OSTI2019

Achieving Highly Durable Random Alloy Nanocatalysts through Intermetallic Cores

Pt catalysts are widely studied for the oxygen reduction reaction, but their cost and susceptibility to poisoning limit their use. A strategy to address both problems is to incorporate a second transition metal to form a bimetallic alloy; however, the durability of such catalysts can be hampered by leaching of non-noble metal components. Here, we show that random alloyed surfaces can be stabilized to achieve high durability by depositing the alloyed phase on top of intermetallic seeds using a model system with PdCu cores and PtCu shells. Specifically, random alloyed PtCu shells were deposited on PdCu seeds that were either the atomically random face-centered cubic phase (FCC A1, Fm$\bar{3}$m) or the atomically ordered CsCl-like phase (B2, Pm$\bar{3}$m). Precise control over crystallite size, particle shape, and composition allowed for comparison of these two core@shell PdCu@PtCu catalysts and the effects of the core phase on electrocatalytic durability. Indeed, the nanocatalyst with the intermetallic core saw only an 18% decrease in activity after stability testing (and minimal Cu leaching), whereas the nanocatalyst with the random alloy core saw a 58% decrease (and greater Cu leaching). The origin of this enhanced durability was probed by classical molecular dynamics simulations of model catalysts, with good agreement between model and experiment. Although many random alloy and intermetallic nanocatalysts have been evaluated, this study directly compares random alloy and intermetallic cores for electrocatalysis with the enhanced durability achieved with the intermetallic cores likely general to other core@shell nanocatalysts.

36 MATERIALS SCIENCE↗
DOE OSTI2020

The Structural Origins of Intense Circular Dichroism in a Waggling Helicene Nanoribbon

We report the synthesis of a new perylene-diimide-based helical nanoribbon, which exhibits the largest molar electronic circular dichroism in the visible range of any molecule. Here, this nanoribbon also displays a substantial increase in molar circular dichroism relative to a smaller helical analogue, even though they share a similar structure: both nanoribbons incorporate two conformationally dynamic double-[4]helicene termini and a rigid [6]helicene-based core within their helical superstructures. Using DFT and TDDFT calculations, we find that the double-[4]helicenes within both nanoribbons orient similarly in solution; as such, conformational differences do not account for the disparities in circular dichroism. Instead, our results implicate the configuration of the double-[6]helicene within the larger nanoribbon as the source of the observed chiroptical amplification.

36 MATERIALS SCIENCE↗
DOE OSTI2020

Surface oxygenation of multicomponent nanoparticles toward active and stable oxidation catalysts

Abstract The need for active and stable oxidation catalysts is driven by the demands in production of valuable chemicals, remediation of hydrocarbon pollutants and energy sustainability. Traditional approaches focus on oxygen-activating oxides as support which provides the oxygen activation at the catalyst-support peripheral interface. Here we report a new approach to oxidation catalysts for total oxidation of hydrocarbons (e.g., propane) by surface oxygenation of platinum (Pt)-alloyed multicomponent nanoparticles (e.g., platinum-nickel cobalt (Pt–NiCo)). The in-situ/operando time-resolved studies, including high-energy synchrotron X-ray diffraction and diffuse reflectance infrared Fourier transform spectroscopy, demonstrate the formation of oxygenated Pt–NiOCoO surface layer and disordered ternary alloy core. The results reveal largely-irregular oscillatory kinetics associated with the dynamic lattice expansion/shrinking, ordering/disordering, and formation of surface-oxygenated sites and intermediates. The catalytic synergy is responsible for reduction of the oxidation temperature by ~100 °C and the high stability under 800 °C hydrothermal aging in comparison with Pt, and may represent a paradigm shift in the design of self-supported catalysts.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

Single-electron charge transfer into putative Majorana and trivial modes in individual vortices

Majorana bound states are putative collective excitations in solids that exhibit the self-conjugate property of Majorana fermions—they are their own antiparticles. In iron-based superconductors, zero-energy states in vortices have been reported as potential Majorana bound states, but the evidence remains controversial. Here, we use scanning tunneling noise spectroscopy to study the tunneling process into vortex bound states in the conventional superconductor NbSe 2 , and in the putative Majorana platform FeTe 0.55 Se 0.45 . We find that tunneling into vortex bound states in both cases exhibits charge transfer of a single electron charge. Our data for the zero-energy bound states in FeTe 0.55 Se 0.45 exclude the possibility of Yu–Shiba–Rusinov states and are consistent with both Majorana bound states and trivial vortex bound states. Our results open an avenue for investigating the exotic states in vortex cores and for future Majorana devices, although further theoretical investigations involving charge dynamics and superconducting tips are necessary.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2018

Algebraic motion of vertically displacing plasmas

In this paper, the vertical motion of a tokamak plasma is analytically modelled during its non-linear phase by a free-moving current-carrying rod inductively coupled to a set of fixed conducting wires or a cylindrical conducting shell. The solutions capture the leading term in a Taylor expansion of the Green's function for the interaction between the plasma column and the surrounding vacuum vessel. The plasma shape and profiles are assumed not to vary during the vertical drifting phase such that the plasma column behaves as a rigid body. In the limit of perfectly conducting structures, the plasma is prevented to come in contact with the wall due to steep effective potential barriers created by the induced Eddy currents. Resistivity in the wall allows the equilibrium point to drift towards the vessel on the slow timescale of flux penetration. The initial exponential motion of the plasma, understood as a resistive vertical instability, is succeeded by a non-linear “sinking” behaviour shown to be algebraic and decelerating. Finally, the acceleration of the plasma column often observed in experiments is thus concluded to originate from an early sharing of toroidal current between the core, the halo plasma, and the wall or from the thermal quench dynamics precipitating loss of plasma current.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2024

Large-scale Multiphysics Simulations of Small Modular Reactors Operating in Natural Circulation

Thanks to the advancements in high-performance computing, advanced modeling and simulation have become crucial in driving the development and deployment of next-generation nuclear reactors, such as small modular reactors (SMRs). SMRs offer the promise of cost-effective baseload electricity production and improved safety, while addressing some of the challenges associated with large reactor designs, such as high capital costs and extended construction timelines. As part of the Exascale Computing Project, the large-scale multiphysics simulation of an entire SMR primary system has been achieved by combining computational fluid dynamics and neutronics. In addition to the successful demonstration of full-core SMR simulations, the current study integrated the impact of natural circulation into the system. Natural circulation is the primary mechanism driving coolant circulation in SMRs. The mass flow rate in the core depends on the core power, and a numerical model has been developed to predict it. The pressure drop caused by the helical coil steam generator was also accounted for by developing a pressure drop correlation based on high-fidelity large eddy simulation results, further improving prediction accuracy. In conclusion, the results of the study demonstrate that the implemented natural circulation model is effective in predicting the responses of SMR full-core multiphysics simulations.

ECP↗
DOE OSTI2012

DIFFERENTIAL EMISSION MEASURE ANALYSIS OF MULTIPLE STRUCTURAL COMPONENTS OF CORONAL MASS EJECTIONS IN THE INNER CORONA

In this paper, we study the temperature and density properties of multiple structural components of coronal mass ejections (CMEs) using differential emission measure (DEM) analysis. The DEM analysis is based on the six-passband EUV observations of solar corona from the Atmospheric Imaging Assembly on board the Solar Dynamic Observatory. The structural components studied include the hot channel in the core region (presumably the magnetic flux rope of the CME), the bright loop-like leading front (LF), and coronal dimming in the wake of the CME. We find that the presumed flux rope has the highest average temperature (>8 MK) and density ({approx}1.0 Multiplication-Sign 10{sup 9} cm{sup -3}), resulting in an enhanced emission measure over a broad temperature range (3 {<=} T(MK) {<=} 20). On the other hand, the CME LF has a relatively cool temperature ({approx}2 MK) and a narrow temperature distribution similar to the pre-eruption coronal temperature (1 {<=} T(MK) {<=} 3). The density in the LF, however, is increased by 2%-32% compared with that of the pre-eruption corona, depending on the event and location. In coronal dimmings, the temperature is more broadly distributed (1 {<=} T(MK) {<=} 4), but the density decreases by {approx}35%-{approx}40%. These observational results show that: (1) CME core regions are significantly heated, presumably through magnetic reconnection; (2) CME LFs are a consequence of compression of ambient plasma caused by the expansion of the CME core region; and (3) the dimmings are largely caused by the plasma rarefaction associated with the eruption.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2013

MAPPING THE CENTRAL REGION OF THE PPN CRL 618 AT SUBARCSECOND RESOLUTION AT 350 GHz

CRL 618 is a well-studied pre-planetary nebula. We have mapped its central region in continuum and molecular lines with the Submillimeter Array at 350 GHz at {approx}0.''3-0.''5 resolutions. Two components are seen in the 350 GHz continuum: (1) a compact emission at the center tracing the dense inner part of the H II region previously detected in a 23 GHz continuum and it may trace a fast ionized wind at the base; and (2) an extended thermal dust emission surrounding the H II region, tracing the dense core previously detected in HC{sub 3}N at the center of the circumstellar envelope. The dense core is dusty and may contain millimeter-sized dust grains. It may have a density enhancement in the equatorial plane. It is also detected in carbon chain molecules HC{sub 3}N and HCN and their isotopologues, with higher excitation lines tracing closer to the central star. It is also detected in CH{sub 2}CHCN toward the innermost part. Most of the emission detected here arises within {approx}630 AU (0.''7) of the central star. A simple radiative transfer model is used to derive the kinematics, physical conditions, and the chemical abundances in the dense core. The dense core is expanding and accelerating, with the velocity increasing roughly linearly from {approx}3 km s{sup -1} in the innermost part to {approx}16 km s{sup -1} at 630 AU. The mass-loss rate in the dense core is extremely high with a value of {approx}1.15 Multiplication-Sign 10{sup -3} M{sub Sun} yr{sup -1}. The dense core has a mass of {approx}0.47 M{sub Sun} and a dynamical age of {approx}400 yr. It could result from a recent enhanced heavy mass-loss episode that ends the asymptotic giant branch phase. The isotopic ratios of {sup 12}C/{sup 13}C and {sup 14}N/{sup 15}N are 9 {+-} 4 and 150 {+-} 50, respectively, both lower than the solar values.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗