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At least 1,243 records · Page 69

Narragansett Bay Water Resources: Using Earth Observations to Identify Trends in Harmful Algal Blooms in Narragansett Bay

Narragansett Bay in Rhode Island is known for its quahog, or hard-shell clam, shellfisheries. However, increased levels in harmful algal blooms (HABs) and high phytoplankton biomass events pose threats to quahog populations, creating conditions that limit quahog growth and reproduction. Quahog shortages, along with public health concerns associated with contamination of shellfish from HAB-produced neurotoxins, have contributed to shellfishery closures. NASA DEVELOP partnered with the Environmental Protection Agency’s National Health and Environmental Effects Research Laboratory and Rhode Island’s Department of Environmental Management to use Earth observations and the partners’ in-situ data to visualize phytoplankton bloom events within the bay. We used Sentinel-3 Ocean and Land Color Instrument (OLCI), Landsat 8 and 9 Operational Land Imager (OLI)data to track several proxies of phytoplankton biomass from June 2016 to October 2023. Multiple sensors and in situ datasets were used to assess the feasibility of monitoring phytoplankton biomass accurately in the relatively small sized Narragansett Bay. We determined that Phytoplankton fluorescence line height was the best parameter to monitor phytoplankton biomass in the bay. Although the relatively small size of the bay and the optical complexity of these nearshore waters can pose a challenge, this assessment showed that Earth observations can be a useful complement to the in-situ monitoring of phytoplankton biomass in Narragansett Bay.

Sentinel-3↗

Performance Analysis of Traditional and Data-Parallel Primitive Implementations of Visualization and Analysis Kernels

Measurements of absolute runtime are useful as a summary of performance when studying parallel visualization and analysis methods on computational platforms of increasing concurrency and complexity. We can obtain even more insights by measuring and examining more detailed measures from hardware performance counters, such as the number of instructions executed by an algorithm implemented in a particular way, the amount of data moved to/from memory, memory hierarchy utilization levels via cache hit/miss ratios, and so forth. This work focuses on performance analysis on modern multi-core platforms of three different visualization and analysis kernels that are implemented in different ways: one is "traditional", using combinations of C++ and VTK, and the other uses a data-parallel approach using VTK-m. Our performance study consists of measurement and reporting of several different hardware performance counters on two different multi-core CPU platforms. The results reveal interesting performance differences between these two different approaches for implementing these kernels, results that would not be apparent using runtime as the only metric.

97 MATHEMATICS AND COMPUTING↗

Ionospheric Disturbances in GNSS TEC Data: SpaceX Falcon 9 Deorbit Maneuvers Over CONUS in April–May 2024

Traveling ionospheric disturbances (TIDs) driven by a large number of internal and external sources are detectable with dense networks of ground‐based Global Navigation Satellite System (GNSS) receivers' measurements of total electron content (TEC). We present the newly developed System for Rapid Analysis of Ionospheric Dynamics (S‐RAID), providing data and visual GNSS TEC products of TIDs of periods ~2–120 min and horizontal resolution up to tens of kilometers for years 2017–2024. The S‐RAID data reveal myriad natural and anthropogenic TIDs from meteorology and space weather, and from human spaceflight activities. In this report, we focus on new prominent disturbances found during SpaceX second stage deorbit maneuvers in April–May 2024. Signatures include waves emanating from the Falcon's trajectory above California and depletions following its deorbit and passage over Arizona. These findings suggest further opportunities to detect and quantify small‐scale events in the ionosphere as well as to understand the responses of the atmosphere‐ionosphere system to known inputs.

58 GEOSCIENCES↗

The Exascale Framework for High Fidelity coupled Simulations (EFFIS): Enabling whole device modeling in fusion science

We present the Exascale Framework for High Fidelity coupled Simulations (EFFIS), a workflow and code coupling framework developed as part of the Whole Device Modeling Application (WDMApp) in the Exascale Computing Project. EFFIS consists of a library, command line utilities, and a collection of run-time daemons. Together, these software products enable users to easily compose and execute workflows that include: strong or weak coupling, in situ (or offline) analysis/visualization/monitoring, command-and-control actions, remote dashboard integration, and more. We describe WDMApp physics coupling cases and computer science requirements that motivate the design of the EFFIS framework. Furthermore, we explain the essential enabling technology that EFFIS leverages: ADIOS for performant data movement, PerfStubs/TAU for performance monitoring, and an advanced COUPLER for transforming coupling data from its native format to the representation needed by another application. Finally, we demonstrate EFFIS using coupled multi-simulation WDMApp workflows and exemplify how the framework supports the project’s needs. We show that EFFIS and its associated services for data movement, visualization, and performance collection does not introduce appreciable overhead to the WDMApp workflow and that the resource-dominant application’s idle time while waiting for data is minimal.

97 MATHEMATICS AND COMPUTING↗

Wind Tunnel Measured Effects on a Twin-Engine Short-Haul Transport Caused by Simulated Ice Accretions

A series of wind tunnel tests were conducted to assess the effects of leading edge ice contamination upon the performance of a short-haul transport. The wind tunnel test was conducted in the NASA Langley 14 by 22 foot facility. The test article was a 1/8 scale twin-engine short-haul jet transport model. Two separate leading edge ice contamination configurations were tested in addition to the uncontaminated baseline configuration. Several aircraft configurations were examined including various flap and slat deflections, with and without landing gear. Data gathered included force measurements via an internal six-component force balance, pressure measurements through 700 electronically scanned wing pressure ports, and wing surface flow visualization measurements. The artificial ice contamination caused significant performance degradation and caused visible changes demonstrated by the flow visualization. The data presented here is just a portion of the data gathered. A more complete data report is planned for publication as a NASA Technical Memorandum and data supplement.

Reehorst, Andrew↗

An experimental study of the aerodynamic characteristics of planar and non-planar outboard wing planforms

A series of wind tunnel experiments have been conducted to investigate the aerodynamic characteristics of several planar and nonplanar wingtip planforms. Seven different configurations: base-line rectangular, elliptical, swept and tapered, swept and tapered with dihedral, swept and tapered with anhedral, rising arc, and drooping arc, were investigated for two different spans. The data are available in terms of coefficient plots of force data, flow visualization photographs, and velocity and pressure flowfield surveys. All planforms, particularly the nonplanar, have some advantages over the baseline rectangular planform. Span efficiencies up to 20-percent greater than baseline are a possibility. However, it is suggested that the span efficiency concept might need refinement for nonplanar wings. Flow survey data show the change in effective span with vortex roll-up. The flow visualization shows the occurrence of mushroom-cell-separation flow patterns at angles of attack corresponding to stall. These grow with an increase in post-stall angle of attack. For the larger aspect ratios, the cells are observed to split into sub-cells at the higher angles of attack. For all angles of attack, some amount of secondary vortex flow is observed for the planar and nonplanar out-board planforms with sweep and taper.

Naik, D. A.↗

TEACHING AN OLD ACCELERATOR NEW TRICKS

The Argonne Tandem Linac Accelerator System (ATLAS) has been a National User Facility since 1985. In that time, many of the systems that help operators retrieve, modify, and store beamline parameters have not kept pace with the advancement of technology. Development of a new method of storing and retrieving beamline parameters resulted in the testing and installation of a time-series database as a potential replacement for the traditional relational database. InfluxDB was selected due to its self-hosted Open-Source version availability as well as the simplicity of installation and setup. A program was written to periodically gather all accelerator parameters in the control system and store them in the time-series database. This resulted in over 13,000 distinct data points, captured at 5-minute intervals. A second test captured 35 channels on a 1-minute cadence. Graphing of the captured data is being done on Grafana, an Open-Source version is available that co-exists well with InfluxDB as the back-end. Grafana made visualizing the data simple and flexible. The testing has allowed for the use of modern graphing tools to generate new insights into operating the accelerator, as well as opened the door to building large data sets suitable for Artificial Intelligence and Machine Learning applications.

Novak, D.↗

Towards Autonomous Experiments by Connecting High Performance Microscopy with High Performance Computing

The digitization of controls, data, and analysis in microscopy is bringing the idea of autonomous microscopes closer to reality than ever before. Automated transmission electron microscopy (TEM) is already fairly routine for some experiments the only require simple repetitive tasks such as imaging biological macromolecules for single particle cryoEM [1], tilt series for electron tomography [2], and movies for crystallography [3]. The vast majority of TEM experiments are conducted completely by human operators who choose the regions of interest, optimize experimental parameters, and make decisions about data quality visually during an experiment. The field is still a long way from having completely autonomous TEMs that can adapt to sample difficulties and tune experimental parameters based on data quality and desired experimental outcomes. Part of the issue is the lack of capability for feeding information learned from on-line, live data analysis back into the on-going experiment [4]. Furthermore, this presentation will discuss current capabilities for large scale data reduction and analysis using high performance computing (i.e. supercomputing) and progress towards developing a true feed-back loop that places data analysis and theory in the experimental loop.

97 MATHEMATICS AND COMPUTING↗

Giovanni: The Bridge between Data and Science

NASA Giovanni (Goddard Interactive Online Visualization ANd aNalysis Infrastructure) is a web-based remote sensing and model data visualization and analysis system developed by the Goddard Earth Sciences Data and Information Services Center (GES DISC). This web-based tool facilitates data discovery, exploration and analysis of large amount of global and regional data sets, covering atmospheric dynamics, atmospheric chemistry, hydrology, oceanographic, and land surface. Data analysis functions include Lat-Lon map, time series, scatter plot, correlation map, difference, cross-section, vertical profile, and animation etc. Visualization options enable comparisons of multiple variables and easier refinement. Recently, new features have been developed, such as interactive scatter plots and maps. The performance is also being improved, in some cases by an order of magnitude for certain analysis functions with optimized software. We are working toward merging current Giovanni portals into a single omnibus portal with all variables in one (virtual) location to help users find a variable easily and enhance the intercomparison capability

Shen, Suhung↗

Real Data and Rapid Results: Ocean Color Data Analysis with Giovanni (GES DISC Interactive Online Visualization and ANalysis Infrastructure)

The NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) has taken a major step addressing the challenge of using archived Earth Observing System (EOS) data for regional or global studies by developing an infrastructure with a World Wide Web interface which allows online, interactive, data analysis: the GES DISC Interactive Online Visualization and ANalysis Infrastructure, or "Giovanni." Giovanni provides a data analysis environment that is largely independent of underlying data file format. The Ocean Color Time-Series Project has created an initial implementation of Giovanni using monthly Standard Mapped Image (SMI) data products from the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) mission. Giovanni users select geophysical parameters, and the geographical region and time period of interest. The system rapidly generates a graphical or ASCII numerical data output. Currently available output options are: Area plot (averaged or accumulated over any available data period for any rectangular area); Time plot (time series averaged over any rectangular area); Hovmeller plots (image view of any longitude-time and latitude-time cross sections); ASCII output for all plot types; and area plot animations. Future plans include correlation plots, output formats compatible with Geographical Information Systems (GIs), and higher temporal resolution data. The Ocean Color Time-Series Project will produce sensor-independent ocean color data beginning with the Coastal Zone Color Scanner (CZCS) mission and extending through SeaWiFS and Moderate Resolution Imaging Spectroradiometer (MODIS) data sets, and will enable incorporation of Visible/lnfrared Imaging Radiometer Suite (VIIRS) data, which will be added to Giovanni. The first phase of Giovanni will also include tutorials demonstrating the use of Giovanni and collaborative assistance in the development of research projects using the SeaWiFS and Ocean Color Time-Series Project data in the online Laboratory for Ocean Color Users (LOCUS). The synergy of Giovanni with high-quality ocean color data provides users with the ability to investigate a variety of important oceanic phenomena, such as coastal primary productivity related to pelagic fisheries, seasonal patterns and interannual variability, interdependence of atmospheric dust aerosols and harmful algal blooms, and the potential effects of climate change on oceanic productivity.

Acker, J. G.↗

Web-Based Tools for Data-Informed Remedy Optimization: Software Theory and User Guide

This report documents the development and application of two web-based decision-support tools for pump-and-treat (P&T) groundwater remediation systems: PTOLEMY (Pump-and-Treat Optimized Location Evaluation to Maximize Yields) and OPTIMA (Optimization for Pump-and-Treat Implementation, Management, & Assessment). These tools enhance remedy design and management by leveraging advanced computational methods – specifically deep learning and multi-objective optimization – within a user-friendly platform. By integrating data-driven models with established hydrogeological knowledge, PTOLEMY and OPTIMA enable more efficient evaluation of well placement and operational strategies, helping site managers balance multiple remediation objectives under complex conditions. Both tools are implemented as modules within the SOCRATES (Suite Of Comprehensive Rapid Analysis Tools for Environmental Sites) web platform, which provides data access, visualization, and analytics to support remedy optimization across sites in the U.S. Department of Energy Office of Environmental Management complex. PTOLEMY is a rapid screening module designed to identify promising locations for new extraction wells. It employs a multi-channel three-dimensional convolutional neural network (MC3D-CNN) trained on high-fidelity simulation data to predict the relative performance (in terms of contaminant mass recovery) of potential well sites. Through an interactive web interface, PTOLEMY visualizes the probability of high performance across a site, highlighting areas where an extraction well is likely to yield above-threshold contaminant removal over a multi-year period. PTOLEMY’s map-based displays and exportable results support transparent communication of screening analyses. By focusing attention on the most favorable candidate locations, the tool augments traditional engineering judgment and physics-based modeling, providing a data informed basis for subsequent detailed evaluations. OPTIMA is a multi objective optimization module designed to find wellfield layouts and operating schedules that meet various cleanup goals. It quickly evaluates thousands of candidate setups – combinations of well locations, timing, and rates – and returns a small set of best trade-off options for comparison. At its core, OPTIMA uses a U-Net-based surrogate model – a deep-learning emulator of a groundwater flow and transport simulator – to dramatically accelerate scenario evaluations. Coupling this fast surrogate with the NSGA-II (Non-dominated Sorting Genetic Algorithm II) evolutionary algorithm, OPTIMA explores a wide decision space of well locations and schedules to identify Pareto-optimal solutions that trade off key objectives (e.g., minimizing cleanup time, maximizing contaminant mass removal, and minimizing plume extent). The tool outputs a family of optimal configurations and visualizes their trade-offs (Pareto frontiers of cleanup metrics and maps of optimized well placements). Site managers can use these results to understand the range of viable strategies and to select candidate designs for more detailed verification. OPTIMA is currently under active development and not yet fully released; this guide provides early documentation to support planning and gather user feedback.

54 ENVIRONMENTAL SCIENCES↗

Coal Power Plant Reinvestment Visualization Tool

This tool, available at https://energycommunities.gov/coal-power-plant-reinvestment-visualization-tool/, serves as a public database and map for the purposes of enabling state and local economic development officials, project developers, and power plant owners to identify and pursue opportunities for plant and community reinvestment. The Coal Power Plant Reinvestment Visualization Tool focuses on coal power plants that have been closed or set-to-retire, alongside key infrastructure characteristics that are relevant for potential redevelopment reinvestment opportunities, including the opportunity to query these data based off pre-defined or user-set queries to identify opportunities for coal power facility reinvestment to support solar, wind, manufacturing, and nuclear. These Data for visualization and query include, but are not limited to: • Electric Transmission Lines • EPA Brownfield Sites (assessed with Federal funding) • Petroleum Terminals • Ports • Railroads • Others The tool will be updated periodically to provide relevant information to enable state and local economic development officials, project developers, and power plant owners to identify and pursue opportunities for economic revitalization and community reinvestment. Within this application data are focused on U.S. power plants with coal generation, where at least one on-site generator utilizes or utilized coal as a fuel source, including planned retirements through 2058 (EIA, 2024). Additional information on energy communities and revitalization opportunities can be accessed on the Interagency Working Group on Coal & Power Plant Communities & Economic Revitalization Energy Communities website (https://energycommunities.gov).

Closures↗

LevSeq: Rapid Generation of Sequence-Function Data for Directed Evolution and Machine Learning

Sequence-function data provides valuable information about the protein functional landscape but is rarely obtained during directed evolution campaigns. Here, we present Long-read every variant Sequencing (LevSeq), a pipeline that combines a dual barcoding strategy with nanopore sequencing to rapidly generate sequence-function data for entire protein-coding genes. LevSeq integrates into existing protein engineering workflows and comes with open-source software for data analysis and visualization. The pipeline facilitates data-driven protein engineering by consolidating sequence-function data to inform directed evolution and provide the requisite data for machine learning-guided protein engineering (MLPE). LevSeq enables quality control of mutagenesis libraries prior to screening, which reduces time and resource costs. Simulation studies demonstrate LevSeq’s ability to accurately detect variants under various experimental conditions. Lastly, we show LevSeq’s utility in engineering protoglobins for new-to-nature chemistry. Widespread adoption of LevSeq and sharing of the data will enhance our understanding of protein sequence-function landscapes and empower data-driven directed evolution.

59 BASIC BIOLOGICAL SCIENCES↗

HERO WEC 2024 - Electrical Configuration Deployment Data

The following submission includes raw and processed electrical configuration deployment data from the in water deployment of NREL's Hydraulic and Electric Reverse Osmosis Wave Energy Converter (HERO WEC), in the form of parquet files, TDMS files, CSV files, bag files, and MATLAB workspaces. This dataset was collected in April 2024 at the Jennette's pier test site in North Carolina. Raw data as TDMS, CSV, and bag files are provided here alongside processed data in the form of MATLAB workspaces and Parquet files. This dataset includes the Python code used to process the data and MATLAB scripts to visualize the processed data. All data types, calculations, and processing is described in the included "Data Descriptions" document. All files in this dataset are described in detail in the included README. This data set has been developed by the National Renewable Energy Laboratory, operated by Alliance for Sustainable Energy, LLC, for the U.S. Department of Energy (DOE) under Contract No. DE-AC36-08GO28308. Funding provided by the U.S. Department of Energy Office of Energy Efficiency and Renewable Energy Water Power Technologies Office.

16 TIDAL AND WAVE POWER↗

Demonstrations at Supercomputing 1998

Contents of the papers include: Visualization techniques- The next generation, Small-machine visualizing very big data sets, Public display of Lunar Prospector data, Steering molecules via Feel, High-dimensional data browser, Multi-source visualization, Interactive surface flow visualization, and the Virtual Windtunnel.

Bryson, Steve↗

Message Brokering Evaluation for Live Spacecraft Telemetry Monitoring, Recorded Playback, and Analysis

Live monitoring and post-flight analysis of telemetry data play a vital role in the development, diagnosis, and deployment of components of a space flight mission. Requirements for such a system include low end-to-end latency between data producers and visualizers, preserved ordering of messages, data stream archiving with random access playback, and real-time creation of derived data streams. We evaluate the RabbitMQ and Kafka message brokering systems, on how well they can enable a real-time, scalable, and robust telemetry framework that delivers telemetry data to multiple clients across heterogeneous platforms and flight projects. In our experiments using an actively developed robotic arm testbed, Kafka yielded a much higher message throughput rate and a consistent publishing rate across the number of topics and consumers. Consumer message rates were consistent across the number of topics but can exhibit bursty behavior with an increase in the contention for a single topic partition with increasing number of consumers.

Lee, Daren↗

Studying Diurnal Variations of Aerosols with NASA MERRA-2 Reanalysis Data

Aerosols play an important role in atmospheric dynamics, climate variations, and Earth's energy cycle by altering the radiation balance in the atmosphere through interaction with clouds, providing fertilizer for forests and canopy, and as a supply of iron to the ocean over long time periods. Studies suggest that much of the feedback between dust aerosols and dynamics is associated with diurnal and synoptic scale variability. However, the lack of sub-daily resolution of aerosols from satellite observations makes it difficult to study the diurnal characteristics, especially over tropical and subtropical regions. Investigation of this topic utilizes over 37 years of simulated global aerosol products from NASA atmospheric reanalysis, in the second Modern-Era Retrospective analysis for Research and Applications (MERRA-2) data set, available from NASA Goddard Earth Science Data and Information Services Center (GES DISC). MERRA-2 covers the period 1980-present, and is continuing as an ongoing climate analysis. Aerosol assimilation is included throughout the period, using data from MODIS, MISR, AERONET, and AVHRR (in the pre-EOS period). The aerosols are assimilated using the MERRA-2 aerosol model, which interacts directly with radiation parameterization, and is radiatively coupled with atmospheric model dynamics in the Goddard Earth Observing System Model, Version 5 (GEOS-5). Hourly, monthly, and monthly diurnal data are available at spatial resolution of 0.5o x 0.625o (latitude x longitude). By using MERRA-2 hourly and monthly diurnal products, different aerosol diurnal variabilities are observed over North America, Africa, Asia, and Australia, that may be due to different meteorological conditions and aerosol sources. The presentation will also provide an overview of MERRA-2 data services at GES DISC, such as how to find and download data, and how to quickly visualize and analyze data online with Giovanni.

aerosol↗

Identification and estimation of the area planted with irrigated rice based on the visual interpretation of LANDSAT MSS data

The objective was to test the feasibility of the application of MSS-LANDSAT data to irrigated rice crop identification and area evaluation, within four rice growing regions of the Rio Grande do Sul state, in order to extend the methodology for the whole state. The applied methodology was visual interpretation of the following LANDSAT products: channels 5 and 7 black and white imageries and color infrared composite imageries all at the scale of 1:250.000. For crop identification and evaluation, the multispectral criterion and the seasonal variation were utilized. Based on the results it was possible to conclude that: (1) the satellite data were efficient for crop area identification and evaluation; (2) the utilization of the multispectral criterion, allied to the seasonal variation of the rice crop areas from the other crops and, (3) the large cloud cover percentage found in the satellite data made it impossible to realize a rice crop spectral monitoring and, therefore, to define the best dates for such data acquisition for rice crop assessment.

Parada, N. D. J.↗