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At least 1,243 records · Page 69

Case studies on design, simulation and visualization of control and measurement applications using REX control system

REX Control System is a professional advanced tool for design and implementation of complex control systems that belongs to softPLC category. It covers the entire process starting from simulation of functionality of the application before deployment, through implementation on real-time target, towards analysis, diagnostics and visualization. Basically it consists of two parts: the development tools and the runtime system. It is also compatible with Simulink environment, and the way of implementation of control algorithm is very similar. The control scheme is finally compiled (using RexDraw utility) and uploaded into a chosen real-time target (using RexView utility). There is a wide variety of hardware platforms and real-time operating systems supported by REX Control System such as for example Windows Embedded, Linux, Linux/Xenomai deployed on SBC, IPC, PAC, Raspberry Pi and others with many I/O interfaces. It is modern system designed both for measurement and control applications, offering a lot of additional functions concerning data archiving, visualization based on HTML5, and communication standards. The paper will sum up possibilities of its use in educational process, focused on control of case studies of physical models with classical and advanced control algorithms.

97 MATHEMATICS AND COMPUTING↗

A 3D contact analysis approach for the visualization of the electrical contact asperities

The electrical contact is an important phenomenon that should be given into consideration to achieve better performance and long term reliability for the design of devices. Based upon this importance, the electrical contact interface has been visualized as a “3D Contact Map” and used in order to investigate the contact asperities. The contact asperities describe the structures above and below the contact spots (the contact spots define the 3D contact map) to the two conductors which make the contact system. The contact asperities require the discretization of the 3D microstructures of the contact system into voxels. A contact analysis approach has been developed and introduced in this paper which shows the way to the 3D visualization of the contact asperities of a given contact system. For the discretization of 3D microstructure of contact system into voxels, X-ray Computed Tomography (CT) method is used in order to collect the data of a 250 V, 16 A rated AC single pole rocker switch which is used as a contact system for investigation.

47 OTHER INSTRUMENTATION↗

Integration of triaxial testing and pore-scale visualization of methane hydrate bearing sediments

Understanding mechanical interactions between hydrate and hosting sediments is critical for evaluating formation stability and associated environmental impacts of hydrate-bearing sediments during gas production. While core-scale studies of hydrate-bearing sediments are readily available and some explanations of observed results rely on pore-scale behavior of hydrate, actual pore-scale observations supporting the larger-scale phenomena are rarely available for hydrate-bearing sediments, especially with methane as guest molecules. The primary reasons for the scarcity include the challenge of developing tools for small-scale testing apparatus and pore-scale visualization capability. We present a testing assembly that combines pore-scale visualization and triaxial test capability of methane hydrate-bearing sediments. This testing assembly allows temperature regulation and independent control of four pressures: influent and effluent pore pressure, confining pressure, and axial pressure. Axial and lateral effective stresses can be applied independently to a 9.5 mm diameter and 19 mm long specimen while the pore pressure and temperature are controlled to maintain the stability of methane hydrate. The testing assembly also includes an X-ray transparent beryllium core holder so that 3D computed tomography scanning can be conducted during the triaxial loading. This testing assembly permits pore-scale exploration of hydrate-sediment interaction in addition to the traditional stress-strain relationship. Exemplary outcomes are presented to demonstrate applications of the testing assembly on geomechanical property estimations of methane-hydrate bearing sediments.

Seol, Yongkoo (ORCID:0000000295163405)↗

Quantification and visualization of uncertainties in reconstructed penumbral images of implosions at Omega

Penumbral imaging is a technique used in plasma diagnostics in which a radiation source shines through one or more large apertures onto a detector. To interpret a penumbral image, one must reconstruct it to recover the original source. The inferred source always has some error due to noise in the image and uncertainty in the instrument geometry. Interpreting the inferred source thus requires quantification of that inference’s uncertainty. Markov chain Monte Carlo algorithms have been used to quantify uncertainty for similar problems but have never been used for the inference of the shape of an image. Because of this, there are no commonly accepted ways of visualizing uncertainty in two-dimensional data. This paper demonstrates the application of the Hamiltonian Monte Carlo algorithm to the reconstruction of penumbral images of fusion implosions and presents ways to visualize the uncertainty in the reconstructed source. This methodology enables more rigorous analysis of penumbral images than has been done in the past.

Instruments & Instrumentation↗

Transmission interference fringe ( TIF ) technique for the dynamic visualization of evaporating droplet

Here, the transmission interference fringe (TIF) technique was developed to visualize the dynamics of evaporating droplets based on the Reflection Interference Fringe (RIF) technique for micro-sized droplets. The geometric formulation was conducted to determine the contact angle (CA) and height of macro-sized droplets without the need for the prism used in RIF. The TIF characteristics were analyzed through experiments and simulations to demonstrate a wider range of contact angles from 0 to 90°, in contrast to RIF's limited range of 0–30°. TIF was utilized to visualize the dynamic evaporation of droplets in the constant contact radius (CCR) mode, observing the droplet profile change from convex-only to convex-concave at the end of dry-out from the interference fringe formation. The TIF also observed the contact angle increase from the fringe radius increase. This observation is uniquely reported as the interference fringe (IF) technique can detect the formation of interference fringe between the reflection from the center convex profile and the reflection from the edge concave profile on the far-field screen. Unlike general microscopy techniques, TIF can detect far-field interference fringes as it focuses beyond the droplet-substrate interface. The formation of the convex-concave profile during CCR evaporation is believed to be influenced by the non-uniform evaporative flux along the droplet surface.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

In situ visualization of multicomponents coevolution in a battery pouch cell

Lithium-ion battery (LIB) is a broadly adopted technology for energy storage. With increasing demands to improve the rate capability, cyclability, energy density, safety, and cost efficiency, it is crucial to establish an in-depth understanding of the detailed structural evolution and cell-degradation mechanisms during battery operation. Here, we present a laboratory-based high-resolution and high-throughput X-ray micro–computed laminography approach, which is capable of in situ visualizing of an industry-relevant lithium-ion (Li-ion) pouch cell with superior detection fidelity, resolution, and reliability. This technique enables imaging of the pouch cell at a spatial resolution of 0.5 μm in a laboratory system and permits the identification of submicron features within cathode and anode electrodes. We also demonstrate direct visualization of the lithium plating in the imaged pouch cell, which is an important phenomenon relevant to battery fast charging and low-temperature cycling. Our development presents an avenue toward a thorough understanding of the correlation among multiscale structures, chemomechanical degradation, and electrochemical behavior of industry-scale battery pouch cells.

25 ENERGY STORAGE↗

A catalog of visual-like morphologies in the 5 CANDELS fields using deep learning

We present a catalog of visual-like H-band morphologies of ∼50.000 galaxies (H{sub f160w} < 24.5) in the 5 CANDELS fields (GOODS-N, GOODS-S, UDS, EGS, and COSMOS). Morphologies are estimated using Convolutional Neural Networks (ConvNets). The median redshift of the sample is 〈z〉∼1.25. The algorithm is trained on GOODS-S, for which visual classifications are publicly available, and then applied to the other 4 fields. Following the CANDELS main morphology classification scheme, our model retrieves for each galaxy the probabilities of having a spheroid or a disk, presenting an irregularity, being compact or a point source, and being unclassifiable. ConvNets are able to predict the fractions of votes given to a galaxy image with zero bias and ∼10% scatter. The fraction of mis-classifications is less than 1%. Our classification scheme represents a major improvement with respect to Concentration-Asymmetry-Smoothness-based methods, which hit a 20%–30% contamination limit at high z. The catalog is released with the present paper via the Rainbow database (http://rainbowx.fis.ucm.es/Rainbow-navigator-public/).

79 ASTRONOMY AND ASTROPHYSICS↗

RCSB PDB Mobile : iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) resource provides tools for query, analysis and visualization of the 3D structures in the PDB archive. As the mobile Web is starting to surpass desktop and laptop usage, scientists and educators are beginning to integrate mobile devices into their research and teaching. In response, we have developed the RCSB PDB Mobile app for the iOS and Android mobile platforms to enable fast and convenient access to RCSB PDB data and services. Lastly, using the app, users from the general public to expert researchers can quickly search and visualize biomolecules, and add personal annotations via the RCSB PDB's integrated MyPDB service.

59 BASIC BIOLOGICAL SCIENCES↗

SDSS IV MaNGA: visual morphological and statistical characterization of the DR15 sample

ABSTRACT We present a detailed visual morphological classification for the 4614 MaNGA galaxies in SDSS Data Release 15, using image mosaics generated from a combination of r band (SDSS and deeper DESI Legacy Surveys) images and their digital post-processing. We distinguish 13 Hubble types and identify the presence of bars and bright tidal debris. After correcting the MaNGA sample for volume completeness, we calculate the morphological fractions, the bi-variate distribution of type and stellar mass M* – where we recognize a morphological transition ‘valley’ around S0a-Sa types – and the variations of the g − i colour and luminosity-weighted age over this distribution. We identified bars in 46.8 per cent of galaxies, present in all Hubble types later than S0. This fraction amounts to a factor ∼2 larger when compared with other works for samples in common. We detected 14 per cent of galaxies with tidal features, with the fraction changing with M* and morphology. For 355 galaxies, the classification was uncertain; they are visually faint, mostly of low/intermediate masses, low concentrations, and discy in nature. Our morphological classification agrees well with other works for samples in common, though some particular differences emerge, showing that our image procedures allow us to identify a wealth of added value information as compared to SDSS-based previous estimates. Based on our classification, we also propose an alternative criteria for the E–S0 separation, in the structural semimajor to semiminor axis versus bulge to total light ratio (b/a − B/T) and concentration versus semimajor to semiminor axis (C − b/a) space.

Vázquez-Mata, J. A. (ORCID:0000000186941204)↗

Visualizing the mass transfer flow in direct-impact accretion

We use a variety of visualization techniques to display the interior and surface flows in a double white dwarf binary undergoing direct-impact mass transfer and evolving dynamically to a merger. The structure of the flow can be interpreted in terms of standard dynamical, cyclostrophic, and geostrophic arguments. We describe and showcase some visualization and analysis techniques of potential interest for astrophysical hydrodynamics. In the context of R Coronae Borealis stars, we find that mixing of accretor material with donor material at the shear layer between the fast accretion belt and the slower rotating accretor body will always result in some dredge-up. We also discuss briefly some potential applications to other types of binaries.

79 ASTRONOMY AND ASTROPHYSICS↗

Network portal: a database for storage, analysis and visualization of biological networks

The ease of generating high-throughput data has enabled investigations into organismal complexity at the systems level through the inference of networks of interactions among the various cellular components (genes, RNAs, proteins and metabolites). The wider scientific community, however, currently has limited access to tools for network inference, visualization and analysis because these tasks often require advanced computational knowledge and expensive computing resources. We have designed the network portal (http://networks.systemsbiology.net) to serve as a modular database for the integration of user uploaded and public data, with inference algorithms and tools for the storage, visualization and analysis of biological networks. The portal is fully integrated into the Gaggle framework to seamlessly exchange data with desktop and web applications and to allow the user to create, save and modify workspaces, and it includes social networking capabilities for collaborative projects. While the current release of the database contains networks for 13 prokaryotic organisms from diverse phylogenetic clades (4678 co-regulated gene modules, 3466 regulators and 9291 cis-regulatory motifs), it will be rapidly populated with prokaryotic and eukaryotic organisms as relevant data become available in public repositories and through user input. The modular architecture, simple data formats and open API support community development of the portal.

59 BASIC BIOLOGICAL SCIENCES↗

Clear as mud redefined: Tunable transparent mineral scaffolds for visualizing microbial processes below ground

Microbes inhabiting complex porous microenvironments in sediments and aquifers catalyze reactions that are critical to global biogeochemical cycles and ecosystem health. However, the opacity and complexity of porous sediment and rock matrices have considerably hindered the study of microbial processes occurring within these habitats. Here, we generated microbially compatible, optically transparent mineral scaffolds to visualize and investigate microbial colonization and activities occurring in these environments, in laboratory settings and in situ. Using inexpensive synthetic cryolite mineral, we produced optically transparent scaffolds mimicking the complex 3D structure of sediments and rocks by adapting a suspension-based, freeze-casting technique commonly used in materials science. Fine-tuning of parameters, such as freezing rate and choice of solvent, provided full control of pore size and architecture. The combined effects of scaffold porosity and structure on the movement of microbe-sized particles, tested using velocity tracking of fluorescent beads, showed diverse yet reproducible behaviors. The scaffolds we produced are compatible with epifluorescence microscopy, allowing the fluorescence-based identification of colonizing microbes by DNA-based staining and fluorescence in situ hybridization (FISH) to depths of 100 µm. Additionally, Raman spectroscopy analysis indicates minimal background signal in regions used for measuring deuterium and 13 C enrichment in microorganisms, highlighting the potential to directly couple D 2 O or 13 C stable isotope probing and Raman-FISH for quantifying microbial activity at the single-cell level. To demonstrate the relevance of cryolite scaffolds for environmental field studies, we visualized their colonization by diverse microorganisms within rhizosphere sediments of a coastal seagrass plant using epifluorescence microscopy. The tool presented here enables highly resolved, spatially explicit, and multimodal investigations into the distribution, activities, and interactions of underground microbes typically obscured within opaque geological materials until now.

36 MATERIALS SCIENCE↗

Direct Visualization of Surface Spin-Flip Transition in MnBi 4 Te 7

Here, we report direct visualization of spin-flip transition of the surface layer in antiferromagnet MnBi 4 Te 7 , a natural superlattice of alternating MnBi 2 Te 4 and Bi 2 Te 3 layers, using cryogenic magnetic force microscopy (MFM). The observation of magnetic contrast across domain walls and step edges confirms that the antiferromagnetic order persists to the surface layers. The magnetic field dependence of the MFM images reveals that the surface magnetic layer undergoes a first-order spin-flip transition at a magnetic field that is lower than the bulk transition, in excellent agreement with a revised Mills model. Our analysis suggests no reduction of the order parameter in the surface magnetic layer, implying robust ferromagnetism in the single-layer limit. The direct visualization of surface spin-flip transition not only opens up exploration of surface metamagnetic transitions in layered antiferromagnets, but also provides experimental support for realizing quantized transport in ultrathin films of MnBi 4 Te 7 and other natural superlattice topological magnets.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Nanoscale visualization of the thermally driven evolution of antiferromagnetic domains in FeTe thin films

Antiferromagnetic order, being a ground state of a number of exotic quantum materials, is of immense interest both from the fundamental physics perspective and for driving potential technological applications. For a complete understanding of antiferromagnetism in materials, nanoscale visualization of antiferromagnetic domains, domain walls, and their robustness to external perturbations is highly desirable. Here, we synthesize antiferromagnetic FeTe thin films using molecular-beam epitaxy. We visualize local antiferromagnetic ordering and domain formation using spin-polarized scanning tunneling microscopy. From the atomically resolved scanning tunneling microscopy topographs, we calculate local structural distortions to find a high correlation with the distribution of the antiferromagnetic order. This is consistent with the monoclinic structure in the antiferromagnetic state. Interestingly, we observe a substantial domain-wall change by small temperature variations, unexpected for the low-temperature changes used compared to the much higher antiferromagnetic ordering temperature of FeTe. This is in contrast to electronic nematic domains in the cousin FeSe multilayer films, where we find no electronic or structural change within the same temperature range. Further, our experiments provide the atomic-scale imaging of perturbation-driven magnetic domain evolution simultaneous with the ensuing structural response of the system. The results reveal surprising thermally driven modulations of antiferromagnetic domains in FeTe thin films well below the Néel temperature.

36 MATERIALS SCIENCE↗

Three-dimensional texture visualization approaches: theoretical analysis and examples

Crystallographic textures are commonly represented in terms of Euler angle triplets and contour plots of planar sections through Euler space. In this paper, the basic theory is provided for the creation of alternative orientation representations using three-dimensional visualizations. The use of homochoric, cubochoric, Rodrigues and stereographic orientation representations is discussed, and illustrations are provided of fundamental zones for all rotational point-group symmetries. A connection is made to the more traditional Euler space representations. An extensive set of three-dimensional visualizations in both standard and anaglyph movies is available.

Chemistry↗

XtalCAMP: a comprehensive program for the analysis and visualization of scanning Laue X-ray micro-/nanodiffraction data

XtalCAMP is a software package based on the MATLAB platform, which is suitable for, but not limited to, the analysis and visualization of scanning Laue X-ray micro-/nanodiffraction data. The main objective of the software is to provide complementary functionalities to the Laue indexing software packages used at several synchrotron beamlines. Here, the graphical user interfaces allow the easy analysis of characteristic microstructure features, including real-time intensity mapping for a quick examination of phase, grain and defect distribution, 2D color-coded mapping of microstructural properties from the output of other Laue indexing software, crystal orientation visualization, grain boundary characterization based on orientation/misorientation calculation, principal strain/stress analysis, and strain ellipsoid representation, as well as a series of additional toolkits. As an example, XtalCAMP is applied to the microstructural investigation of a solution-heat-treated Ni-based superalloy manufactured using a laser 3D-printing technique, and a deformed natural quartzite from Val Bregaglia in the Central Alps.

36 MATERIALS SCIENCE↗

Visualizing the Bohr effect in hemoglobin: neutron structure of equine cyanomethemoglobin in the R state and comparison with human deoxyhemoglobin in the T state

Neutron crystallography provides direct visual evidence of the atomic positions of deuterium-exchanged H atoms, enabling the accurate determination of the protonation/deuteration state of hydrated biomolecules. Comparison of two neutron structures of hemoglobins, human deoxyhemoglobin (T state) and equine cyanomethemoglobin (R state), offers a direct observation of histidine residues that are likely to contribute to the Bohr effect. Previous studies have shown that the T-state N-terminal and C-terminal salt bridges appear to have a partial instead of a primary overall contribution. Four conserved histidine residues [αHis72(EF1), αHis103(G10), αHis89(FG1), αHis112(G19) and βHis97(FG4)] can become protonated/deuterated from the R to the T state, while two histidine residues [αHis20(B1) and βHis117(G19)] can lose a proton/deuteron. αHis103(G10), located in the α 1 :β 1 dimer interface, appears to be a Bohr group that undergoes structural changes: in the R state it is singly protonated/deuterated and hydrogen-bonded through a water network to βAsn108(G10) and in the T state it is doubly protonated/deuterated with the network uncoupled. The very long-term H/D exchange of the amide protons identifies regions that are accessible to exchange as well as regions that are impermeable to exchange. The liganded relaxed state (R state) has comparable levels of exchange (17.1% non-exchanged) compared with the deoxy tense state (T state; 11.8% non-exchanged). Interestingly, the regions of non-exchanged protons shift from the tetramer interfaces in the T-state interface (α 1 :β 2 and α 2 :β 1 ) to the cores of the individual monomers and to the dimer interfaces (α 1 :β 1 and α 2 :β 2 ) in the R state. The comparison of regions of stability in the two states allows a visualization of the conservation of fold energy necessary for ligand binding and release.

59 BASIC BIOLOGICAL SCIENCES↗

SNNVis: Visualizing Graph Embedding of Evolutionary Optimization for Spiking Neural Networks

While Spiking Neural Networks (SNNs) show a lot of promise, it is difficult to optimize them because applying traditional gradient-based optimization techniques is difficult. Even though evolutionary algorithms (EAs) have been shown to promise to optimize SNNs, understanding the relationship between evolving the characteristics of SNNs and their performance to improve the optimization algorithm is challenging because of the complex characteristics and huge population size. We propose visual analytics with novel graph embedding for evolutionary SNNs to address the challenges. While existing graph embedding techniques have limitations in preserving the specific features of the nodes and edges, our approach maintains them. Also, we develop visual analytics for understanding the relationship between the network performance and the features of nodes and edges and exploring and analyzing the evolving SNNs to build insights into improving the EA.

Chae, Junghoon [ORNL] (ORCID:0000000206016746)↗