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At least 1,243 records · Page 69

A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Accurate and comprehensive annotation of transcript sequences is essential for transcript quantification and differential gene and transcript expression analysis. Single-molecule long-read sequencing technologies provide improved integrity of transcript structures including alternative splicing, and transcription start and polyadenylation sites. However, accuracy is significantly affected by sequencing errors, mRNA degradation, or incomplete cDNA synthesis. We present a new and comprehensive Arabidopsis thaliana Reference Transcript Dataset 3 (AtRTD3). AtRTD3 contains over 169,000 transcripts—twice that of the best current Arabidopsis transcriptome and including over 1500 novel genes. Seventy-eight percent of transcripts are from Iso-seq with accurately defined splice junctions and transcription start and end sites. We develop novel methods to determine splice junctions and transcription start and end sites accurately. Mismatch profiles around splice junctions provide a powerful feature to distinguish correct splice junctions and remove false splice junctions. Stratified approaches identify high-confidence transcription start and end sites and remove fragmentary transcripts due to degradation. AtRTD3 is a major improvement over existing transcriptomes as demonstrated by analysis of an Arabidopsis cold response RNA-seq time-series. AtRTD3 provides higher resolution of transcript expression profiling and identifies cold-induced differential transcription start and polyadenylation site usage. AtRTD3 is the most comprehensive Arabidopsis transcriptome currently. It improves the precision of differential gene and transcript expression, differential alternative splicing, and transcription start/end site usage analysis from RNA-seq data. The novel methods for identifying accurate splice junctions and transcription start/end sites are widely applicable and will improve single-molecule sequencing analysis from any species.

transcription start and end sites↗

Impact of Systematic Modeling Uncertainties on Kilonova Property Estimation

The precise atomic structure and therefore the wavelength-dependent opacities of lanthanides are highly uncertain. This uncertainty introduces systematic errors in modeling transients like kilonovae and estimating key properties such as mass, characteristic velocity, and heavy metal content. Here, we quantify how atomic data from across the literature as well as choices of thermalization efficiency of r-process radioactive decay heating impact the light curve and spectra of kilonovae. Specifically, we analyze the spectra of a grid of models produced by the radiative transfer code Sedona that span the expected range of kilonova properties to identify regions with the highest systematic uncertainty. Our findings indicate that differences in atomic data have a substantial impact on estimates of lanthanide mass fraction, spanning approximately 1 order of magnitude for lanthanide-rich ejecta, and demonstrate the difficulty in precisely measuring the lanthanide fraction in lanthanide-poor ejecta. Mass estimates vary typically by 25%–40% for differing atomic data. Similarly, the choice of thermalization efficiency can affect mass estimates by 20%–50%. Observational properties such as color and decay rate are highly model dependent. Velocity estimation, when fitting solely based on the light curve, can have a typical error of ∼100%. Atomic data of light r-process elements can strongly affect blue emission. Even for well-observed events like GW170817, the total lanthanide production estimated using different atomic data sets can vary by a factor of ∼6.

Gravitational wave sources↗

Polarimetric Geometric Modeling for mm-VLBI Observations of Black Holes

The Event Horizon Telescope (EHT) is a millimeter very long baseline interferometry (VLBI) array that has imaged the apparent shadows of the supermassive black holes M87* and Sagittarius A*. Polarimetric data from these observations contain a wealth of information on the black hole and accretion flow properties. In this work, we develop polarimetric geometric modeling methods for mm-VLBI data, focusing on approaches that fit data products with differing degrees of invariance to broad classes of calibration errors. We establish a fitting procedure using a polarimetric “m-ring” model to approximate the image structure near a black hole. By fitting this model to synthetic EHT data from general relativistic magnetohydrodynamic models, we show that the linear and circular polarization structure can be successfully approximated with relatively few model parameters. We then fit this model to EHT observations of M87* taken in 2017. In total intensity and linear polarization, the m-ring fits are consistent with previous results from imaging methods. In circular polarization, the m-ring fits indicate the presence of event-horizon-scale circular polarization structure, with a persistent dipolar asymmetry and orientation across several days. The same structure was recovered independently of observing band, used data products, and model assumptions. Despite this broad agreement, imaging methods do not produce similarly consistent results. Our circular polarization results, which imposed additional assumptions on the source structure, should thus be interpreted with some caution. Polarimetric geometric modeling provides a useful and powerful method to constrain the properties of horizon-scale polarized emission, particularly for sparse arrays like the EHT.

79 ASTRONOMY AND ASTROPHYSICS↗

Optimal command generation for tracking a class of discontinuous trajectories

Commands are found to drive a linear system to optimally track a class of prescribed trajectories, each of which contains a point of discontinuity. The paper focuses on the guidance problem of command generation, to be implemented in a feedforward fashion; the necessary additional control or feedback regulation structure is not studied in detail, but assumed to be provided in applications as a conventional error-feedback regulator. Solutions are found for the infinite-time problem which are optimal with respect to a quadratic performance criterion; suboptimal controls which satisfy a continuity condition are also found. The controls have applications to certain problems in aircraft guidance where command trajectories are piecewise continuous. Several examples are worked out in detail, with comparisons with conventional, nonfeedforward solutions to the problem, and a brief discussion of a simpler, suboptimal solution.

Weissenberger, S.↗

Improved simulation of aerosol, cloud, and density measurements by shuttle lidar

Data retrievals are simulated for a Nd:YAG lidar suitable for early flight on the space shuttle. Maximum assumed vertical and horizontal resolutions are 0.1 and 100 km, respectively, in the boundary layer, increasing to 2 and 2000 km in the mesosphere. Aerosol and cloud retrievals are simulated using 1.06 and 0.53 microns wavelengths independently. Error sources include signal measurement, conventional density information, atmospheric transmission, and lidar calibration. By day, tenuous clouds and Saharan and boundary layer aerosols are retrieved at both wavelengths. By night, these constituents are retrieved, plus upper tropospheric, stratospheric, and mesospheric aerosols and noctilucent clouds. Density, temperature, and improved aerosol and cloud retrievals are simulated by combining signals at 0.35, 1.06, and 0.53 microns. Particlate contamination limits the technique to the cloud free upper troposphere and above. Error bars automatically show effect of this contamination, as well as errors in absolute density nonmalization, reference temperature or pressure, and the sources listed above. For nonvolcanic conditions, relative density profiles have rms errors of 0.54 to 2% in the upper troposphere and stratosphere. Temperature profiles have rms errors of 1.2 to 2.5 K and can define the tropopause to 0.5 km and higher wave structures to 1 or 2 km.

Russell, P. B.↗

Results from observations of the 15 June 1983 occultation by the Neptune system

Observations of eight Neptune occultations from six sites in the southwestern Pacific on June 15, 1983. The data were used to search for evidence of rings around Neptune down to a distance of 0.03 Neptune radii from the planetary surface, but the results were negative. An astrometric analysis of the timings yielded solution for the equatorial radius a(0) of Neptune at 1 microbar pressure and the oblatness e at this level. The results are: a(0) = 25,295 + or - 50 km; e = 0.022 + or - 0.004, from which a value for a(1) (equatorial radius at 1 bar pressure) of 24,830 + or - 100 km; and a rotation period of P = 15 h (+3, -2 h) is derived. These results are based on a recent determination of Neptune's pole position and mass quadruple moment, and are consistent with the hypothesis that Neptune and Uranus have homologous mass distributions, although the constraint on interior structure is a weak one. If the probable uncertainty of the pole position is taken into account, error bars on e and derived quantities should be increased by about 50 percent. The present determinations of Neptune atmospheric temperatures at 1 microbar are consistent with earlier results and when combined with all previous data give an average value of 156 + or - 10 K. There is only slight evidence for any latitude dependence in the temperatures. Profiles with a high signal-to-noise ratio suggest the possible presence of an absorbing layer at altitudes higher than the 1-microbar level.

Hubbard, W. B.↗

Automated mesoscale wind fields derived from GOES satellite imagery

A new multispectral image-processing system for extracting mesoscale wind fields automatically from sequences of GOES imagery is described. This system can produce equivalent or superior cloud-wind estimates compared to the time-consuming manual methods used on various interactive meteorological processing systems. Analysis of automated mesoscale cloud winds yield an estimated random error value of less than 1 m/s and produces both regional and mesoscale vector wind-field structure and divergence patterns that are consistent in time and highly correlated with subsequent severe thunderstorm development. As an example, the system is here applied to SMS II five-minute imagery from April 24, 1975 and the results are compared with manually obtained ones.

Wilson, G. S.↗

Generalized parity relations for large space structures with uncertain parameters

The generalized parity relations method is a technique that can be used to detect sensor and actuator failures on a large space structure. A model of a grid structure was used to evaluate the performance of these relations. It shows their relative sensitivity to modeling errors. A method using sensor outputs and actuator inputs is required for the design of the generalized parity relations. Three different estimators are studied. The last estimator can generate relations optimized for the detection of a particular failure which are interesting when the level of sensor noise is high.

Dutilloy, J. R.↗

Dual keel space station control/structures interaction study

A study was made to determine the influence of truss bay size on the performance of the space station control system. The objective was to determine if any control problems existed during reboost and to assess the level of potential control/structures interaction during operation of the control moment gyros used for vertical stabilization. The models analyzed were detailed finite-element representations of the 5 meter and 9 foot growth versions of the 300 kW dual keel station. Results are presented comparing the performance of the reboost control system for both versions of the space station. Standards for comparison include flexible effects at the attitude control sensor locations and flexible contributions to pointing error at the solar collectors. Bode analysis results are presented for the attitude control system and control, structural, and damping sensitivities are examined.

Young, John W.↗

Computational aspects of sensitivity calculations in transient structural analysis

A key step in the application of formal automated design techniques to structures under transient loading is the calculation of sensitivities of response quantities to the design parameters. This paper considers structures with general forms of damping acted on by general transient loading and addresses issues of computational errors and computational efficiency. The equations of motion are reduced using the traditional basis of vibration modes and then integrated using a highly accurate, explicit integration technique. A critical point constraint formulation is used to place constraints on the magnitude of each response quantity as a function of time. Three different techniques for calculating sensitivities of the critical point constraints are presented. The first two are based on the straightforward application of the forward and central difference operators, respectively. The third is based on explicit differentiation of the equations of motion. Condition errors, finite difference truncation errors, and modal convergence errors for the three techniques are compared by applying them to a simple five-span-beam problem. Sensitivity results are presented for two different transient loading conditions and for both damped and undamped cases.

Greene, William H.↗

Computational aspects of sensitivity calculations in transient structural analysis

A key step in the application of formal automated design techniques to structures under transient loading is the calculation of sensitivities of response quantities to the design parameters. This paper considers response quantities to the design parameters. This paper considers structures with general forms of damping acted on by general transient loading and addresses issues of computational errors and computational efficiency. The equations of motion are reduced using the traditional basis of vibration modes and then integrated using a highly accurate, explicit integration technique. A critical point constraint formulation is used to place constraints on the magnitude of each response quantity as a function of time. Three different techniques for calculating sensitivities of the critical point constraints are presented. The first two are based on the straightforward application of the forward and central difference operators, respectively. The third is based on explicit differentiation of the equations of motion. Condition errors, finite difference truncation errors, and modal convergence errors for the three techniques are compared by applying them to a simple five-span-beam problem. Sensitivity results are presented for two different transient loading conditions and for both damped and undamped cases.

Greene, William H.↗

Atmospheric water vapour over oceans from SSM/I measurements

A statistical retrieval technique is developed to derive the atmospheric water vapor column content from the Special Sensor Microwave/Imager (SSM/I) measurements. The radiometer signals are simulated by means of radiative-transfer calculations for a large set of atmospheric/oceanic situations. These simulated responses are subsequently summarized by multivariate analyses, giving water-vapor coefficients and error estimates. Radiative-transfer calculations show that the SSM/I microwave imager can detect atmospheric water vapor structures with an accuracy from 0.145 to 0.17 g/sq cm. The accuracy of the method is confirmed by globally distributed match-ups with radiosonde measurements.

Schluessel, Peter↗

On lightly damped linear systems

A simple engineering approximation using undamped modes is shown to be valid for determining the effect of small viscous or equivalent viscous-type damping forces on the forced vibration response of a lightly damped linear systems. It is shown that intermodal coupling of the undamped modes may be neglected with negligible error, except when the system has degenerate or quasi-degenerate modes. This can occur in complex structural systems such as aircraft or spacecraft. In such cases, one of these two modes has virtually no damping, whereas the other effectively has the damping of both.

Young, M. I.↗

Automated assembly of large space structures

The topics are presented in viewgraph form and include: the Telerobotic Assembly Facility; joint components; the robot end effector; assembly projected time; typical truss assembly breakdown; the Automated Structures Assembly Facility's current control hierarchy; an assembly problem summary; observations and results; sensor monitoring and error recovery; recommendations and conclusions; and current plans and development.

Marvin D Rhodes↗

The Catalog of Positions of Optically Bright Extragalactic Radio Sources OBRS-1

It is expected that the European Space Agency mission Gaia will make it possible to determine coordinates in the optical domain of more than 500,000 quasars. In 2006, a radio astrometry project was launched with the overall goal of making comparisons between coordinate systems derived from future space-born astrometry instruments and the coordinate system constructed from analysis of global very long baseline interferometry (VLBI) more robust. Investigation of the rotation, zonal errors, and non-alignment of the radio and optical positions caused by both radio and optical structures is needed to validate both techniques. In order to support these studies, the densification of the list of compact extragalactic objects that are bright in both radio and optical ranges is desirable. A set of 105 objects from the list of 398 compact extragalactic radio sources with decl. > -10deg was observed with the Very Long Baseline Array and European VLBI Network (EVN) with the primary goal of producing images with milliarcsecond resolution. These sources are brighter than 18 mag in the V band, and they were previously detected by the EVN. In this paper, coordinates of observed sources have been derived with milliarcsecond accuracies from analysis of these VLBI observations using an absolute astrometry method. The catalog of positions for 105 target sources is presented. The accuracies of source coordinates are in the range of 0.3.7 mas, with a median of 1.1 mas.

Petrov, L.↗

Calculating and Mitigating the Risk of a Cut Glove to a Space Walking Astronaut

One of the high risk operations on the International Space Station (ISS) is conducting a space walk, or an Extra Vehicular Activity (EVA). Threats to the space walking crew include airlock failures, space suit failures, and strikes from micro ]meteoroids and orbital debris (MM/OD). There are risks of becoming untethered from the space station, being pinched between the robotic arm and a piece of equipment, tearing your suit on a sharp edge, and other human errors that can be catastrophic. For decades NASA identified and tried to control sharp edges on external structure and equipment by design; however a new and unexpected source of sharp edges has since become apparent. Until recently, one of the underappreciated environmental risks was damage to EVA gloves during a spacewalk. The ISS has some elements which have been flying in the environment of space for over 14 years. It has and continues to be bombarded with MM/OD strikes that have created small, sharp craters all over the structure, including the dedicated EVA handrails and surrounding structure. These craters are capable of cutting through several layers of the EVA gloves. Starting in 2006, five EVA crewmembers reported cuts in their gloves so large they rendered the gloves unusable and in some cases cut the spacewalk short for the safety of the crew. This new hazard took engineers and managers by surprise. NASA has set out to mitigate this risk to safety and operations by redesigning the spacesuit gloves to be more resilient and designing a clamp to isolate MM/OD strikes on handrails, and is considering the necessity of an additional tool to repair strikes on non ]handrail surfaces (such as a file). This paper will address how the ISS Risk Team quantified an estimate of the MM/OD damage to the ISS, and the resulting likelihood of sustaining a cut glove in order to measure the effectiveness of the solutions being investigated to mitigate this risk to the mission and crew.

Castillo, Theresa↗

Controller Design for Propeller Phase Synchronization with Aeroacoustic Performance Metrics

Active noise reduction using phase control takes advantage of the propellers used in a distributed electric air vehicle by treating each propeller as an independent acoustic source. These acoustic sources can destructively interfere if the propellers are synchronized. With this method, the radiated sound power around the vehicle can be reduced. The purpose of this paper is to design a controller that regulates propeller positions to reduce the radiated sound power through destructive interference and to demonstrate the performance of the controller through acoustic testing. There are two control requirements for reducing the sound pressure level considered in this paper. The first is accurately regulating the difference between the propeller azimuthal blade positions (phase) relative to their neighbors. By changing the phase at the source, we can control the phase of the sound wave at an arrival position to create destructive interference. The second consideration is maintaining high coherence between the two propeller sources. To achieve significant attenuation, the controller needs to regulate phase error and suppress sources of incoherence. Performance is demonstrated through sound recordings performed in the NASA Langley Structural Acoustic Loads and Transmission (SALT) anechoic chamber. We show that the controller is capable of reducing sound pressure level at a given observer location by 17 dB at the blade passage frequency and that this method can reduce the radiated sound power by 6 dB at the blade passage frequency.

Andrew Patterson↗

TPSAS-NF1676L-32030-DND

Composite structures are often difficult to inspect due to the anisotropic nature of the material systems and the range of flaws and defects that can arise in the manufacturing process. NASA?s Advanced Composites Project, a public-private partnership between government, universities and industry, seeks to address improved methods, tools, and protocols to reduce the development and certification timeline for composite materials and structures. The rapid inspection of composites is one of the three focused research areas of the project. One deliverable of the project is to develop an NDE Methods and Capabilities Handbook. This Handbook provides a publically available guidance document that facilitates the selection of appropriate NDE techniques and provides recommended protocols for detecting and characterizing common flaw types in solid laminate polymer matrix composite (PMC) structures. The Handbook will reduce the time required to develop qualified inspection processes for composite aircraft structures during the development, certification, and manufacturing phases by providing a reference that helps minimize trial and error and provides guidance on best practices, techniques, and settings, for specific flaw types and geometries. The Handbook will include an NDE Guidance Matrix that provides an applicability rating for NDE techniques as they apply to given flaw types. NDE techniques will include, but is not limited to ultrasound, laser based ultrasound, infrared thermography, and x-ray CT. Flaw types will include, but are not limited to porosity, delamination, voids, AFP defects and impact damage. The Handbook will contain details that support the applicability rating including, but not limited to, specimen details, inspection parameters, data analysis techniques, inspection efficiency (speed & cost), and limitations. This presentation will describe key Handbook activities with examples of the techniques and flaw types examined by the Advanced Composite Consortium members.

Patricia A Howell↗