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At least 1,243 records · Page 69

Absolute quantitation of propranolol from 200-μm regions of mouse brain and liver thin tissues using laser ablation-dropletProbe-mass spectrometry

Rationale: The ability to quantify drugs and metabolites in tissue with sub-mm resolution is a challenging but much needed capability in pharmaceutical research. To fill this void, a novel surface sampling approach combining laser ablation with the commercial dropletProbe automated liquid surface sampling system (LA-dropletProbe) was developed and presented here.Methods: Parylene C-coated 200 × 200 μm tissue regions of mouse brain and kidney thin tissue sections were analyzed for propranolol by laser ablation of tissue directly into a preformed liquid junction. Propranolol was detected by high performance liquid chromatography with positive ion mode electrospray ionization tandem mass spectrometry. Quantitation was achieved via application of a stable isotope-labeled internal standard and an external calibration curve.Results: Absolute concentration of propranolol determined from 200 × 200 µm tissue regions were compared to propranolol concentrations obtained from 2.3-mm-diameter tissue punches of adjacent, non-coated sections using standard bulk tissue extraction protocols followed by regular HPLC-MS/MS analysis. Average concentration of propranolol in both organs determined by the two employed methods agreed within ±12%. Furthermore, the relative abundance of phase II hydroxypropranolol glucuronide metabolites were recorded and found to be consistent with previous results.Conclusions: This work illustrates that depositing a thin parylene C layer onto thin tissue prior to analysis, which seals the surface and prevents direct liquid extraction of the drug from the tissue, coupled to the novel LA-dropletProbe surface sampling system is a viable approach for sub-mm resolution quantitative drug distribution analysis.

59 BASIC BIOLOGICAL SCIENCES↗

Single-Filament Imaging Mass Spectrometry Lipidomics in Arthrospira platensis

Elucidating intra-organismal biochemical and lipid organization in photosynthetic biological cell factories of filamentous cyanobacteria, i.e., Arthrospira platensis (Spirulina), is important to track physiological response mechanisms during growth. Little is known about the filaments' biochemical organization and cellular structure and no label-free imaging techniques exist that provide molecular mapping. We applied ultra-high resolution mass spectrometry (7T FT-ICR-MS) matrix-assisted laser desorption ionization (MALDI) imaging to immobilized Spirulina filaments to investigate the localization of lipids across distinct physiological regions. We optimized matrix selection and deposition methods with the goal of facilitating high spatial, and intra-filament, resolution using untargeted multivariate statistical spectral deconvolution across MS pixels. Our results demonstrate an improved two step application with an optimized procedure for intra-organismal lipid profiling to improve analyte sensitivity and achieve higher spatial resolution, whereby we evaluate three conventional matrices 2,5-dihydroxybenzoic acid (DHB), a 9:1 ratio of DHB:superDHB (sDHB), 1,5- diaminonaphthalene (DAN) and a 50:50 mix of DHB:sDHB and compare delineation and pixel-based elucidation of intra-filament lipidomics. We identified a total of 1,626 features that could be putatively assigned a lipid-like formula based on database query and 46 unique features, with associated lipid assignments that were significantly distinct in their intra-filament location. MALDI- imaging MS with untargeted statistical spectral deconvolution was used to visualize intra-filament lipidomics organization in Spirulina filaments. Improvements in matrix deposition, including sequential sublimation and pneumatic spraying, increased signal abundance at high spatial resolution and allowed for identification of distinct lipid composition regions. Here in this work outlines a methodology that may be used for micro-ecological untargeted molecular phenotyping.

09 BIOMASS FUELS↗

Temporal Sampling of Enzymes from Live Cells by Localized Electroporation and Quantification of Activity by SAMDI Mass Spectrometry

Abstract Measuring changes in enzymatic activity over time from small numbers of cells remains a significant technical challenge. In this work, a method for sampling the cytoplasm of cells is introduced to extract enzymes and measure their activity at multiple time points. A microfluidic device, termed the live cell analysis device (LCAD), is designed, where cells are cultured in microwell arrays fabricated on polymer membranes containing nanochannels. Localized electroporation of the cells opens transient pores in the cell membrane at the interface with the nanochannels, enabling extraction of enzymes into nanoliter‐volume chambers. In the extraction chambers, the enzymes modify immobilized substrates, and their activity is quantified by self‐assembled monolayers for matrix‐assisted laser desorption/ionization (SAMDI) mass spectrometry. By employing the LCAD‐SAMDI platform, protein delivery into cells is demonstrated. Next, it is shown that enzymes can be extracted, and their activity measured without a loss in viability. Lastly, cells are sampled at multiple time points to study changes in phosphatase activity in response to oxidation by hydrogen peroxide. With this unique sampling device and label‐free assay format, the LCAD with SAMDI enables a powerful new method for monitoring the dynamics of cellular activity from small populations of cells.

Mukherjee, Prithvijit↗

Ionic Pairs-Engineered Fluorinated Covalent Organic Frameworks Toward Direct Air Capture of CO 2

The covalent organic frameworks (COFs) possessing high crystallinity and capability to capture low-concentration CO 2 (400 ppm) from air are still underdeveloped. The challenge lies in simultaneously incorporating high-density active sites for CO 2 insertion and maintaining the ordered structure. Herein, a structure engineering approach is developed to afford an ionic pair-functionalized crystalline and stable fluorinated COF (F-COF) skeleton. The ordered structure of the F-COF is well maintained after the integration of abundant basic fluorinated alcoholate anions, as revealed by synchrotron X-ray scattering experiments. The breakthrough test demonstrates its attractive performance in capturing (400 ppm) CO 2 from gas mixtures via O$-$C bond formation, as indicated by the in situ spectroscopy and operando nuclear magnetic resonance spectroscopy using 13 C-labeled CO 2 sources. Both theoretical and experimental thermodynamic studies reveal the reaction enthalpy of ≈-40 kJ mol -1 between CO 2 and the COF scaffolds. This implies weaker interaction strength compared with state-of-the-art amine-derived sorbents, thus allowing complete CO 2 release with less energy input. The structure evolution study from synchrotron X-ray scattering and small-angle neutron scattering confirms the well-maintained crystalline patterns after CO 2 insertion. In conclusion, the as-developed proof-of-concept approach provides guidance on anchoring binding sites for direct air capture (DAC) of CO 2 in crystalline scaffolds.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

ContourNet: Salient Local Contour Identification for Blob Detection in Fusion Plasma Simulation Data

We present ContourNet, a deep learning approach to identify salient local isocontours as blobs in large-scale 5D gyrokinetic tokamak simulation data. Blobs-regions of high turbulence that run along the edge wall down toward the diverter and can damage the tokamak-are non-well-defined features but have been empirically localized by isocontours in 2D normalized fluctuating density fields. The key of our study is to train ContourNet to follow the empirical rules to detect blobs over the time-varying simulation data. The architecture of ContourNet is a convolutional neural segmentation network: the inputs are the density field and a rasterized isocontour; the output is a set of isocontour encircling blobs. At the training stage, we feed the network with manually identified isocontours and propagated labels. At the inference stage, we extract isocontours from the segmented blob regions. Results show that our approach can achieve both high accuracy and performance, which enables scientists to understand the blob dynamics influencing the confinement of the plasma.

Blob detection↗

Privacy-Preserving Knowledge Transfer with Bootstrap Aggregation of Teacher Ensembles

There is a need to transfer knowledge among institutions and organizations to save effort in annotation and labeling or in enhancing task performance. However, knowledge transfer is difficult because of restrictions that are in place to ensure data security and privacy. Institutions are not allowed to exchange data or perform any activity that may expose personal information. With the leverage of a differential privacy algorithm in a high-performance computing environment, we propose a new training protocol, Bootstrap Aggregation of Teacher Ensembles (BATE), which is applicable to various types of machine learning models. The BATE algorithm is based on and provides enhancements to the PATE algorithm, maintaining competitive task performance scores on complex datasets with underrepresented class labels.We conducted a proof-of-the-concept study of the information extraction from cancer pathology report data from four cancer registries and performed comparisons between four scenarios: no collaboration, no privacy-preserving collaboration, the PATE algorithm, and the proposed BATE algorithm. The results showed that the BATE algorithm maintained competitive macro-averaged F1 scores, demonstrating that the suggested algorithm is an effective yet privacy-preserving method for machine learning and deep learning solutions.

Yoon, Hong-Jun↗

Automated Programmable Logic Controller Memory Forensics Using RGB Image Analysis and Deep Learning

The introduction of Industry 4.0 and Internet-based technologies has enhanced industrial control system operations but have inadvertently increased their vulnerabilities to cyber attacks. When an industrial control system is compromised, security analysts need to identify the root cause quickly to start the recovery process and develop mitigation strategies. Memory forensics is critical in the incident analysis process to ascertain what occurred. Approaches for analyzing the persistent memory in industrial control devices are limited and almost nonexistent for volatile memory. This chapter proposes an automated methodology for programmable logic controller memory dump analysis using computer vision and deep learning techniques. The methodology converts the sequences of bytes in a programmable logic controller memory dump to red-green-blue pixels and employs a deep learning model that learns the underlying patterns and features of pre-labeled forensic artifacts in images and segments them into distinct regions. The trained model is employed to automatically segment new memory images and identify forensic artifacts. Evaluation of the methodology on a Schneider Electric Modicon M221 programmable logic controller under code injection and code modification attacks demonstrates its ability to detect attack artifacts in memory dumps.

Asmar Awad, Rima [ORNL] (ORCID:0000000233407742)↗

Entropic order parameters in weakly coupled gauge theories

The entropic order parameters measure in a universal geometric way the statistics of non-local operators responsible for generalized symmetries. In this article, we compute entropic order parameters in weakly coupled gauge theories. To perform this computation, the natural route of evaluating expectation values of physical (smeared) non-local operators is prevented by known difficulties in constructing suitable smeared Wilson loops. We circumvent this problem by studying the smeared non-local class operators in the enlarged non-gauge invariant Hilbert space. This provides a generic approach for smeared operators in gauge theories and explicit formulas at weak coupling. In this approach, the Wilson and ’t Hooft loops are labeled by the full weight and co-weight lattices respectively. We study generic Lie groups and discuss couplings with matter fields. Smeared magnetic operators, as opposed to the usual infinitely thin ones, have expectation values that approach one at weak coupling. The corresponding entropic order parameter saturates to its maximum topological value, except for an exponentially small correction, which we compute. On the other hand, smeared ’t Hooft loops and their entropic disorder parameter are exponentially small. We verify that both behaviors match the certainty relation for the relative entropies. In particular, we find upper and lower bounds (that differ by a factor of 2) for the exact coefficient of the linear perimeter law for thin loops at weak coupling. This coefficient is unphysical/non-universal for line operators. We end with some comments regarding the RG flows of entropic parameters through perturbative beta functions.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Fun with F24

We study some special features of F 24 , the holomorphic c = 12 superconformal field theory (SCFT) given by 24 chiral free fermions. We construct eight different Lie superalgebras of “physical” states of a chiral superstring compactified on F 24 , and we prove that they all have the structure of Borcherds-Kac-Moody superalgebras. This produces a family of new examples of such superalgebras. The models depend on the choice of an \( \mathcal{N} \) = 1 supercurrent on F 24 , with the admissible choices labeled by the semisimple Lie algebras of dimension 24. We also discuss how F 24 , with any such choice of supercurrent, can be obtained via orbifolding from another distinguished c = 12 holomorphic SCFT, the \( \mathcal{N} \) = 1 supersymmetric version of the chiral CFT based on the E 8 lattice.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Matrix ensembles with global symmetries and ’t Hooft anomalies from 2d gauge theory

The Hilbert space of a quantum system with internal global symmetry $\textit{G}$ decomposes into sectors labelled by irreducible representations of $\textit{G}$. If the system is chaotic, the energies in each sector should separately resemble ordinary random matrix theory. We show that such “sector-wise” random matrix ensembles arise as the boundary dual of two- dimensional gravity with a $\textit{G}$ gauge field in the bulk. Within each sector, the eigenvalue density is enhanced by a nontrivial factor of the dimension of the representation, and the ground state energy is determined by the quadratic Casimir. We study the consequences of ’t Hooft anomalies in the matrix ensembles, which are incorporated by adding specific topological terms to the gauge theory action. The effect is to introduce projective representations into the decomposition of the Hilbert space. Finally, we consider ensembles with $\textit{G}$ symmetry and time reversal symmetry, and analyze a simple case of a mixed anomaly between time reversal and an internal $\mathbb{Z}$ 2 symmetry.

2D Gravity↗

Probing Hawking radiation through capacity of entanglement

We consider the capacity of entanglement in models related with the gravitational phase transitions. The capacity is labeled by the replica parameter which plays a similar role to the inverse temperature in thermodynamics. In the end of the world brane model of a radiating black hole the capacity has a peak around the Page time indicating the phase transition between replica wormhole geometries of different types of topology. Similarly, in a moving mirror model describing Hawking radiation the capacity typically shows a discontinuity when the dominant saddle switches between two phases, which can be seen as a formation of island regions. In either case we find the capacity can be an invaluable diagnostic for a black hole evaporation process.

2D gravity↗

Anomalous dimensions from soft Regge constants

Using an effective field theory (EFT) formalism for forward scattering, we reconsider the factorization of 2 → 2 scattering amplitudes in the Regge limit. Expanding the amplitude in gauge invariant operators labelled by the number of Glauber exchanges, allows us to further factorize the standard impact factors into separate collinear and soft functions. The soft functions are universal, and describe radiative corrections to the Reggeized gluon states exchanged by the collinear projectiles. Remarkably, we find that the one-loop soft function for the single Reggeized gluon state is given to O(ϵ) in terms of the two-loop cusp and two-loop rapidity anomalous dimensions. We argue that this iterative structure follows from the simple action of crossing symmetry in the forward scattering limit, which in the EFT allows us to replace the divergent part of a soft loop by a much simpler Glauber loop. We use this correspondence to provide a simple calculation of the two-loop Regge trajectory using the EFT. We then explore its implications at higher perturbative orders, and derive the maximally matter dependent contributions to the Regge trajectory to all loop orders, i.e. the terms ~ α$^{k+1}_{s}$n$^{k}_{f}$ for any k, where n f is the number of massless flavors. These simplifications suggests that the EFT approach to the Regge limit will be helpful to explore and further understand the structure of the Regge limit.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Modular flow in JT gravity and entanglement wedge reconstruction

It has been shown in recent works that JT gravity with matter with two boundaries has a type II ∞ algebra on each side. As the bulk spacetime between the two boundaries fluctuates in quantum nature, we can only define the entanglement wedge for each side in a pure algebraic sense. As we take the semiclassical limit, we will have a fixed long wormhole spacetime for a generic partially entangled thermal state (PETS), which is prepared by inserting heavy operators on the Euclidean path integral. Under this limit, with appropriate assumptions of the matter theory, geometric notions of the causal wedge and entanglement wedge emerge in this background. In particular, the causal wedge is manifestly nested in the entanglement wedge. Different PETS are orthogonal to each other, and thus the Hilbert space has a direct sum structure over sub-Hilbert spaces labeled by different Euclidean geometries. The full algebra for both sides is decomposed accordingly. From the algebra viewpoint, the causal wedge is dual to an emergent type III 1 subalgebra, which is generated by boundary light operators. To reconstruct the entanglement wedge, we consider the modular flow in a generic PETS for each boundary. We show that the modular flow acts locally and is the boost transformation around the global RT surface in the semiclassical limit. It follows that we can extend the causal wedge algebra to a larger type III 1 algebra corresponding to the entanglement wedge. Within each sub-Hilbert space, the original type II ∞ reduces to type III 1 .

2D Gravity↗

Exact-WKB, complete resurgent structure, and mixed anomaly in quantum mechanics on S 1

We investigate the exact-WKB analysis for quantum mechanics in a periodic potential, with N minima on S 1 . We describe the Stokes graphs of a general potential problem as a network of Airy-type or degenerate Weber-type building blocks, and provide a dictionary between the two. The two formulations are equivalent, but with their own pros and cons. Exact-WKB produces the quantization condition consistent with the known conjectures and mixed anomaly. The quantization condition for the case of N-minima on the circle factorizes over the Hilbert sub-spaces labeled by discrete theta angle (or Bloch momenta), and is consistent with ’t Hooft anomaly for even N and global inconsistency for odd N. By using Delabaere-Dillinger-Pham formula, we prove that the resurgent structure is closed in these Hilbert subspaces, built on discrete theta vacua, and by a transformation, this implies that fixed topological sectors (columns of resurgence triangle) are also closed under resurgence.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Resonant anomaly detection with multiple reference datasets

An important class of techniques for resonant anomaly detection in high energy physics builds models that can distinguish between reference and target datasets, where only the latter has appreciable signal. Such techniques, including Classification Without Labels (CWoLa) and Simulation Assisted Likelihood-free Anomaly Detection (SALAD) rely on a single reference dataset. They cannot take advantage of commonly available multiple datasets and thus cannot fully exploit available information. In this work, we propose generalizations of CWoLa and SALAD for settings where multiple reference datasets are available, building on weak supervision techniques. We demonstrate improved performance in a number of settings with realistic and synthetic data. As an added benefit, our generalizations enable us to provide finite-sample guarantees, improving on existing asymptotic analyses.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Orientation reversal and the Chern-Simons natural boundary

We show that the fundamental property of preservation of relations, underlying resurgent analysis, provides a new perspective on crossing a natural boundary, an important general problem in theoretical and mathematical physics. This reveals a deeper rigidity aspect of resurgence in a quantum field theory path integral. The physical context here is the non-perturbative completion of complex Chern-Simons theory that associates to a 3-manifold a collection of q-series invariants labeled by Spinc structures, for which crossing the natural boundary corresponds to orientation reversal of the 3-manifold. Our new resurgent perspective leads to a practical numerical algorithm that generates q-series which are dual to unary q-series composed of false theta functions. Until recently, these duals were only known in a limited number of cases, essentially based on Ramanujan’s mock theta functions, and the common belief was that the duals might not even exist in the general case. Resurgence analysis identifies as primary objects Mordell integrals: up to changes of variables, they are Laplace transforms of resurgent functions. Their unique Borel summed transseries decomposition on either side of the Stokes line is simply the unique decomposition into real and imaginary parts. In turn, the latter are combinations of unary q-series in terms of q and its modular counterpart $\overset{\sim }{q}$ , and are resurgent by construction. The Mordell integral is analytic across the natural boundary of the q and $\overset{\sim }{q}$ series, and uniqueness of a similar decomposition which preserves algebraic relations on the other side of the boundary defines the unique boundary crossing of the q series. We demonstrate that this continuation can be efficiently implemented numerically. In the cases where unique mock modular identities are known, they are found by this numerical procedure, but the procedure can go well beyond the known list of identities. A particularly interesting feature of the resurgent approach is that it reveals new aspects, and is very different from other known approaches based on indefinite theta series, Appell-Lerch sums, and representation theory of logarithmic vertex operator algebras.

Chern-Simons theories↗

Celestial geometry

Celestial holography expresses S-matrix elements as correlators in a CFT living on the night sky. Poincaré invariance imposes additional selection rules on the allowed positions of operators. As a consequence, n-point correlators are only supported on certain patches of the celestial sphere, depending on the labeling of each operator as incoming/outgoing. Here we initiate a study of the celestial geometry, examining the kinematic support of celestial amplitudes for different crossing channels. We give simple geometric rules for determining this support. For n ≥ 5, we can view these channels as tiling together to form a covering of the celestial sphere. Our analysis serves as a stepping off point to better understand the analyticity of celestial correlators and illuminate the connection between the 4D kinematic and 2D CFT notions of crossing symmetry.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

The information content of jet quenching and machine learning assisted observable design

Jets produced in high-energy heavy-ion collisions are modified compared to those in proton-proton collisions due to their interaction with the deconfined, strongly-coupled quark-gluon plasma (QGP). In this work, we employ machine learning techniques to identify important features that distinguish jets produced in heavy-ion collisions from jets produced in proton-proton collisions. We formulate the problem using binary classification and focus on leveraging machine learning in ways that inform theoretical calculations of jet modification: (i) we quantify the information content in terms of Infrared Collinear (IRC)-safety and in terms of hard vs. soft emissions, (ii) we identify optimally discriminating observables that are in principle calculable in perturbative QCD, and (iii) we assess the information loss due to the heavy-ion underlying event and background subtraction algorithms. We illustrate our methodology using Monte Carlo event generators, where we find that important information about jet quenching is contained not only in hard splittings but also in soft emissions and IRC-unsafe physics inside the jet. This information appears to be significantly reduced by the presence of the underlying event. We discuss the implications of this for the prospect of using jet quenching to extract properties of the QGP. Since the training labels are exactly known, this methodology can be used directly on experimental data without reliance on modeling. We outline a proposal for how such an experimental analysis can be carried out, and how it can guide future measurements.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗