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At least 1,243 records · Page 69

The role of metals in mammalian olfaction of low molecular weight organosulfur compounds

While suggestions concerning the possible role of metals in olfaction and taste date back 50 years, only recently has it been possible to confirm these proposals with experiments involving individual olfactory receptors (ORs). A detailed discussion of recent experimental results demonstrating the key role of metals in enhancing the response of human and other vertebrate ORs to specific odorants is presented against the backdrop of our knowledge of how the sense of smell functions both at the molecular and whole animal levels. This review emphasizes the role of metals in the detection of low molecular weight thiols, sulfides, and other organosulfur compounds, including those found in strong-smelling animal excretions and plant volatiles, and those used in gas odorization. Alternative theories of olfaction are described, with evidence favoring the modified “shape” theory. The use of quantum mechanical/molecular modeling (QM/MM), site-directed mutagenesis and saturation-transfer-difference (STD) NMR is discussed, providing support for biological studies of mouse and human receptors, MOR244-3 and OR OR2T11, respectively. Copper is bound at the active site of MOR244-3 by cysteine and histidine, while cysteine, histidine and methionine are involved with OR2T11. The binding pockets of these two receptors are found in different locations in the three-dimensional seven transmembrane models. Another recently deorphaned human olfactory receptor, OR2M3, highly selective for a thiol from onions, and a broadly-tuned thiol receptor, OR1A1, are also discussed. Other topics covered include the effects of nanoparticles and heavy metal toxicants on vertebrate and fish ORs, intranasal zinc products and the loss of smell (anosmia).

Block, Eric↗

Modeling Total Dissolved Gas for Optimal Operation of Multireservoir Systems

One important environmental issue of hydropower in the Columbia and Snake River Basins (Pacific Northwest region of United States) is elevated total dissolved gas (TDG) downstream of a dam, which has the potential to cause gas bubble disease in affected fish. Gas supersaturation in the Columbia River Basin primarily occurs due to dissolution of bubbles entrained during spill events. This paper presents a physically based TDG model that can be used to optimize spill operations in multireservoir hydropower systems. Independent variables of the model are forebay TDG, tailwater elevation, spillway and powerhouse discharges, project head, and environmental parameters such as temperature and atmospheric pressure. The model contains seven physically meaningful experimental parameters, which were calibrated and validated against TDG data collected downstream of Rock Island Dam (Washington) from 2008 to 2012. In conclusion, a sensitivity analysis was performed to increase the understanding of the relationships between TDG downstream of the dam and processes such as air entrainment, lateral powerhouse flow, and dissolution.

13 HYDRO ENERGY↗

Enhancing the resiliency of small hydropower projects: environmental function, modularity, and stakeholder elicitation as design priorities

Small hydropower plants supply reliable renewable energy to the grid, though few new plants have been developed in the Unites States over the past few decades due to complex environmental challenges and poor project economics. This paper describes the current landscape of small hydropower development, and introduces a new approach to facility design that co-optimizes the extraction of hydroelectric power from a stream with other important environmental functions such as fish, sediment, and recreational passage. The approach considers hydropower facilities as an integrated system of standardized interlocking modules, designed to sustain stream functions, generate power, and interface with the streambed. It is hypothesized that this modular eco-design approach, when guided by input from the broader small hydropower stakeholder community, can lead to cost savings across the facility, reduced licensing and approval timelines, and ultimately, to enhanced resiliency through improved environmental performance over the lifetime of the project.

Witt, Adam M↗

Culture-independent detection of 'TM7' bacteria in a streptomycin-resistant acidophilic nitrifying process

Nitrification in biological wastewater treatment processes has been believed for long time to take place under neutral conditions and is inhibited under acidic conditions. However, we previously constructed acidophilic nitrifying sequencing-batch reactors (ANSBRs) being capable of nitrification at < pH 4 and harboring bacteria of the candidate phylum 'TM7' as the major constituents of the microbial community. In light of the fact that the 16S rRNA of TM7 bacteria has a highly atypical base substitution possibly responsible for resistance to streptomycin at the ribosome level, this study was undertaken to construct streptomycin-resistant acidophilic nitrifying (SRAN) reactors and to demonstrate whether TM7 bacteria are abundant in these reactors. The SRAN reactors were constructed by seeding with nitrifying sludge from an ANSBR and cultivating with ammonium-containing mineral medium (pH 4.0), to which streptomycin at a concentration of 10, 30 and 50 mg L{sup −1} was added. In all reactors, the pH varied between 2.7 and 4.0, and ammonium was completely converted to nitrate in every batch cycle. PCR-aided denaturing gradient gel electrophoresis (DGGE) targeting 16S rRNA genes revealed that some major clones assigned to TM7 bacteria and Gammaproteobacteria were constantly present during the overall period of operation. Fluorescence in situ hybridization (FISH) with specific oligonucleotide probes also showed that TM7 bacteria predominated in all SRAN reactors, accounting for 58% of the total bacterial population on average. Although the biological significance of the TM7 bacteria in the SRAN reactors are unknown, our results suggest that these bacteria are possibly streptomycin-resistant and play some important roles in the acidophilic nitrifying process.

60 APPLIED LIFE SCIENCES↗

Partial homogeneity based high-resolution nuclear magnetic resonance spectra under inhomogeneous magnetic fields

In nuclear magnetic resonance (NMR) technique, it is of great necessity and importance to obtain high-resolution spectra, especially under inhomogeneous magnetic fields. In this study, a method based on partial homogeneity is proposed for retrieving high-resolution one-dimensional NMR spectra under inhomogeneous fields. Signals from series of small voxels, which characterize high resolution due to small sizes, are recorded simultaneously. Then, an inhomogeneity correction algorithm is developed based on pattern recognition to correct the influence brought by field inhomogeneity automatically, thus yielding high-resolution information. Experiments on chemical solutions and fish spawn were carried out to demonstrate the performance of the proposed method. The proposed method serves as a single radiofrequency pulse high-resolution NMR spectroscopy under inhomogeneous fields and may provide an alternative of obtaining high-resolution spectra of in vivo living systems or chemical-reaction systems, where performances of conventional techniques are usually degenerated by field inhomogeneity.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Traces of natural radionuclides in animal food

Naturally occurring radioactive materials are present everywhere, e.g., in soil, air, housing materials, food, etc. Therefore, human beings and animals receive internal exposure from radioactive elements inside their bodies through breathing and alimentation. Gamma radiation has enough energy to remove an electron from the atom and compromise the rearrangement of electrons in the search for a more stable configuration which can disturb molecule chemical bonding. Food ingestion is one of the most common forms of radioisotopes absorption. The goal of this work is the measurement of natural gamma radiation rates from natural radioisotopes present in animal food. To determine the concentration of natural radionuclides present in animal food gamma-ray spectrometry was applied. We have prepared animal food samples for poultry, fish, dogs, cats and cattle. The two highest total ingestion effective doses observed refers to a sample of mineral salt cattle, 95.3(15) μSv/year, rabbit chow, with a value of 48(5) μSv/year, and cattle mineral salt, with a value of 69(7) μSv/year, while the annual total dose value from terrestrial intake radionuclide is of the order of 290 μSv/year.

61 RADIATION PROTECTION AND DOSIMETRY↗

A small long-life acoustic transmitter for studying the behavior of aquatic animals

The lack of stronger acoustic signal, longer service life and smaller size from off-the-shelf transmitters has precluded intensive research for environmental monitoring of certain species using acoustic telemetry techniques. In this study we developed a small long-life acoustic transmitter with the length of approximately 24.2 mm, the diameter of approximately 5.0 mm, and the dry weight of approximately 0.72 g. The new transmitter can generate an acoustic signal at selectable source level between 159 and 163 dB re 1 µPa at 1 m. The new acoustic transmitter has an operation lifetime up to a year or longer at a pulse rate interval of 15 seconds, and also has a signal detection range up to at least 500 meters that enhances detection probability in a quiet environment. Furthermore, the new technology makes long-term acoustic telemetry studies of small fish possible and is being deployed for long-term tracking of juvenile sturgeon.

47 OTHER INSTRUMENTATION↗

Electric field dynamics in an atmospheric pressure helium plasma jet impinging on a substrate

Time and spatially resolved electric field measurements by Stark polarization spectroscopy in a nanosecond pulsed atmospheric pressure helium jet operating in ambient air and impinging on a conductive indium tin oxide (ITO) coated glass slide are reported. An automatic fitting procedure of the Stark shifted spectra taking into consideration constraints regarding Stark components positions and intensities as well as molecular nitrogen emission subtraction was implemented. This allowed electric field vector components measurements both in the gas phase and at the interface when the jet impinges on the substrate and during the development of a surface ionization wave. The obtained results show an increase of the axial electric field in the jet effluent in the gas phase with a peak magnitude from 12 to 18 kVcm -1 before the ionization wave impinges on the substrate. A steep electric field enhancement to a peak value of about 24 kVcm -1 was observed when the ionization wave impinges on the surface. A peak radial electric field of about 27 kVcm -1 was measured off-axis in the surface ionization wave. These results are consistent with previously reported modelling predictions. While Stark polarization spectroscopy is limited to electric field measurement from regions with emission, we illustrate that the capability to measure near surface electric fields in helium makes it a valuable complementary technique for the electric field-induced second harmonic (E-FISH) technique.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Multiframe point-projection radiography imaging based on hybrid X-pinch

This paper demonstrates the possibility of using a new configuration of the hybrid X-pinch to produce a set of spatially and temporarily separate x-ray bursts that could be used for the radiography of dynamic events. To achieve this, a longer than normal wire is placed between the conical electrodes of the hybrid X-pinch, and a set of small spacers (fishing weights) is placed along the wire. Each subsection of the wire then acts as a unique X-pinch, producing its own radiation burst from a small (~3 µm) spot. The timing between bursts is 20–50 ns, and each is <2 ns in duration. For comparison, if a longer wire is simply employed without spacers, hotspots of radiation occur in random positions and the time between any two bursts does not exceed 20 ns. Examples of two and three frame point-projection radiography of solid-state and plasma test objects are given.

47 OTHER INSTRUMENTATION↗

Single-shot measurements of pulse-front tilt in intense ps laser pulses and its effect on accelerated electron and ion beam characteristics (invited)

Here we report recent single-shot spatiotemporal measurements of laser pulses, including pulse-front tilt (PFT) and spatial chirp, taken at the Compact Multipulse Terawatt laser at the Jupiter Laser Facility in Livermore, CA. STRIPED FISH, a device that measures the complete 3D electric field of fs to ps laser pulses on a single shot, was adapted to near infrared for these measurements. We present the design of the instrument used for these experiments, the on-shot measurements of systematic high-order PFT, and shot-to-shot variations in the measurements of spatiotemporal couplings. Finally, we simulate the effect of PFT in target normal sheath acceleration experiments. These simulations showed that pulse front tilt can steer hot electrons, shape the distribution of the accelerating sheath field, and increase the variability of cutoff energy in the resulting proton spectra. While these effects may be detrimental to experimental accuracy if the pulse front tilt is left unmeasured, hot electron steering shows promise for precision manipulation of the particle source for a range of applications, including irradiation of secondary targets for opacity measurements, radiography, or neutron generation.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Drag reduction and the Vogel exponent of a flexible beam in transient shear flows

Interactions between a flexible beam and a fluid in a channel are of great relevance to biological hairy surfaces, aquatic vegetation, marine life (e.g., fish gills), and many industrial systems alike. While steady state response of a beam to such flows is fairly well-explored, their behavior in the transient regime is not fully understood. Here, a series of numerical simulations are performed to study the laminar Couette flow of an incompressible viscous fluid past an elastic beam in a two-dimensional channel. The flexible beam is perpendicular to the direction of flow, and its base is fixed to the stationary bottom of the channel. We measure the evolution of the Vogel exponent, drag reduction, and reconfiguration number during the transient and steady-state response of the fluid–structure system for different geometrical and physical properties. Our benchmark shows a good agreement between numerical and experimental observations. Our results show that the system's steady-state response at different bulk-fluid velocities can be reproduced by investigating the shear flow response during the transient regime. We define a new variable that characterizes the evolution of the local velocity profile in the proximity of the free end of the beam and use that to characterize the transient-regime response. The analysis yields insight into the competing effects of elasticity of the beam and non-linear flow response.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Active and widespread halogen chemistry in the tropical and subtropical free troposphere

Significance Our measurements show that tropospheric halogen chemistry has a larger capacity to destroy O 3 and oxidize atmospheric mercury than previously recognized. Halogen chemistry is currently missing in most global and climate models, and is effective at removing O 3 at altitudes where intercontinental O 3 transport occurs. It further helps explain the low O 3 levels in preindustrial times. Public health concerns arise from bioaccumulation of the neurotoxin mercury in fish. Our results emphasize that bromine chemistry in the free troposphere oxidizes mercury at a faster rate, and makes water-soluble mercury available for scavenging by thunderstorms. Naturally occurring bromine in air aloft illustrates global interconnectedness between energy choices affecting mercury emissions in developing nations and mercury deposition in, e.g., Nevada, or the southeastern United States.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Crystal structure of an orthomyxovirus matrix protein reveals mechanisms for self-polymerization and membrane association

Many enveloped viruses encode a matrix protein. In the influenza A virus, the matrix protein M1 polymerizes into a rigid protein layer underneath the viral envelope to help enforce the shape and structural integrity of intact viruses. The influenza virus M1 is also known to mediate virus budding as well as the nuclear export of the viral nucleocapsids and their subsequent packaging into nascent viral particles. Despite extensive studies on the influenza A virus M1 (FLUA-M1), only crystal structures of its N-terminal domain are available. Here we report the crystal structure of the full-length M1 from another orthomyxovirus that infects fish, the infectious salmon anemia virus (ISAV). The structure of ISAV-M1 assumes the shape of an elbow, with its N domain closely resembling that of the FLUA-M1. The C domain, which is connected to the N domain through a flexible linker, is made of four α-helices packed as a tight bundle. In the crystal, ISAV-M1 monomers form infinite 2D arrays with a network of interactions involving both the N and C domains. Results from liposome flotation assays indicated that ISAV-M1 binds membrane via electrostatic interactions that are primarily mediated by a positively charged surface loop from the N domain. Furthemore, cryoelectron tomography reconstruction of intact ISA virions identified a matrix protein layer adjacent to the inner leaflet of the viral membrane. The physical dimensions of the virion-associated matrix layer are consistent with the 2D ISAV-M1 crystal lattice, suggesting that the crystal lattice is a valid model for studying M1–M1, M1–membrane, and M1–RNP interactions in the virion.

59 BASIC BIOLOGICAL SCIENCES↗

US cities can manage national hydrology and biodiversity using local infrastructure policy

Significance We introduce a unique and detailed data-driven approach that links cities’ hard infrastructures to their distal ecological impacts on streams. Although US cities concentrate most of the nation’s population, wealth, and consumption in roughly 5% of the land area, we find that city infrastructures influence habitats for over 60% of North America’s fish, mussel, and crayfish species and have contributed to local and complete extinctions in 260 species. We also demonstrate that city impacts are not proportionate to city size but reflect infrastructure decisions; thus, as US urbanization trends continue, local government and utility companies have opportunities to improve regional aquatic ecosystem conditions outside city boundaries through their hard infrastructure policies.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Hagfish from the Cretaceous Tethys Sea and a reconciliation of the morphological–molecular conflict in early vertebrate phylogeny

Hagfish depart so much from other fishes anatomically that they were sometimes considered not fully vertebrate. They may represent: ( i ) an anatomically primitive outgroup of vertebrates (the morphology-based craniate hypothesis); or ( ii ) an anatomically degenerate vertebrate lineage sister to lampreys (the molecular-based cyclostome hypothesis). This systematic conundrum has become a prominent case of conflict between morphology- and molecular-based phylogenies. To date, the fossil record has offered few insights to this long-branch problem or the evolutionary history of hagfish in general, because unequivocal fossil members of the group are unknown. Here, we report an unequivocal fossil hagfish from the early Late Cretaceous of Lebanon. The soft tissue anatomy includes key attributes of living hagfish: cartilages of barbels, postcranial position of branchial apparatus, and chemical traces of slime glands. This indicates that the suite of characters unique to living hagfish appeared well before Cretaceous times. This new hagfish prompted a reevaluation of morphological characters for interrelationships among jawless vertebrates. By addressing nonindependence of characters, our phylogenetic analyses recovered hagfish and lampreys in a clade of cyclostomes (congruent with the cyclostome hypothesis) using only morphological data. This new phylogeny places the fossil taxon within the hagfish crown group, and resolved other putative fossil cyclostomes to the stem of either hagfish or lamprey crown groups. These results potentially resolve the morphological–molecular conflict at the base of the Vertebrata. Furthermore, assessment of character nonindependence may help reconcile morphological and molecular inferences for other major discords in animal phylogeny.

59 BASIC BIOLOGICAL SCIENCES↗

Crumpling of silver nanowires by endolysosomes strongly reduces toxicity

Fibrous particles interact with cells and organisms in complex ways that can lead to cellular dysfunction, cell death, inflammation, and disease. The development of conductive transparent networks (CTNs) composed of metallic silver nanowires (AgNWs) for flexible touchscreen displays raises new possibilities for the intimate contact between novel fibers and human skin. Here, we report that a material property, nanowire-bending stiffness that is a function of diameter, controls the cytotoxicity of AgNWs to nonimmune cells from humans, mice, and fish without deterioration of critical CTN performance parameters: electrical conductivity and optical transparency. Both 30- and 90-nm-diameter AgNWs are readily internalized by cells, but thinner NWs are mechanically crumpled by the forces imposed during or after endocytosis, while thicker nanowires puncture the enclosing membrane and release silver ions and lysosomal contents to the cytoplasm, thereby initiating oxidative stress. This finding extends the fiber pathology paradigm and will enable the manufacture of safer products incorporating AgNWs.

60 APPLIED LIFE SCIENCES↗

High-resolution multicontrast tomography with an X-ray microarray anode–structured target source

Multicontrast X-ray imaging with high resolution and sensitivity using Talbot–Lau interferometry (TLI) offers unique imaging capabilities that are important to a wide range of applications, including the study of morphological features with different physical properties in biological specimens. The conventional X-ray TLI approach relies on an absorption grating to create an array of micrometer-sized X-ray sources, posing numerous limitations, including technical challenges associated with grating fabrication for high-energy operations. We overcome these limitations by developing a TLI system with a microarray anode–structured target (MAAST) source. The MAAST features an array of precisely controlled microstructured metal inserts embedded in a diamond substrate. Using this TLI system, tomography of a Drum fish tooth with high resolution and tri-contrast (absorption, phase, and scattering) reveals useful complementary structural information that is inaccessible otherwise. The results highlight the exceptional capability of high-resolution multicontrast X-ray tomography empowered by the MAAST-based TLI method in biomedical applications.

47 OTHER INSTRUMENTATION↗

Biocompatible surface functionalization architecture for a diamond quantum sensor

Significance Diamond-based quantum sensing enables nanoscale measurements of biological systems with unprecedented sensitivity. Potential applications of this emerging technology range from the investigation of fundamental biological processes to the development of next-generation medical diagnostics devices. One of the main challenges faced by bioquantum sensing is the need to interface quantum sensors with biological target systems. Specifically, such an interface needs to maintain the highly fragile quantum states of our sensor and at the same time be able to fish intact biomolecules out of solution and immobilize them on our quantum sensor surface. Our work overcomes these challenges by combining tools from quantum engineering, single-molecule biophysics, and material processing.

77 NANOSCIENCE AND NANOTECHNOLOGY↗