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Role of the likelihood for elastic scattering uncertainty quantification

In the last decade, uncertainty quantification (UQ) for optical model potentials (OMPs) has become a focal point for nuclear reaction theory, and several competing approaches for OMP UQ have recently been developed. Here, we clarify recent efforts to compare frequentist and Bayesian approaches in the context of OMP UQ [G. B. King et al., Phys. Rev. Lett. 122, 232502 (2019)]. We replicate a portion of that OMP UQ study but use independent statistical tools. Specifically, we compare two methods for OMP parameter inference from elastic scattering data: the Levenberg-Marquardt algorithm for χ 2 minimization on one hand and Markov chain Monte Carlo (MCMC) sampling on the other. Separately, we assess the common practice of using a renormalized likelihood (χ 2 /N), N being the number of data points, instead of the canonical weighted-least-squares likelihood (χ 2 ), as a way of accounting for unknown data correlations. Here, we show that for a generic linear model and for a five-parameter OMP analysis, frequentist and uniform-prior Bayesian approaches recover the same optimum and uncertainty estimates—not systematically larger uncertainties for the Bayesian approach, as was concluded in G. B. King et al., Phys. Rev. Lett. 122, 232502 (2019). Further, we show that if an additional, near-degenerate parameter is introduced into the same OMP analysis such that the parameter posterior becomes non-Gaussian, then covariance-based estimates of uncertainty become unreliable. Finally, we show that regardless of optimization approach, if χ 2 /N is used for the likelihood, the resulting parametric uncertainties increase by $\sqrt{N}$, and that this is responsible for the conclusions drawn in the revisited study. Based on our replication results, we find that a fortuitous cancellation of unreported errors and the renormalization factor can lead to improvement in empirical coverages, as was the case in the original comparative study. We emphasize that developing and applying a realistic likelihood function is an essential task in a UQ analysis, and that several recent UQ studies that employed a renormalized likelihood (i.e., including a 1/N factor) may have yielded unrealistically large uncertainties for elastic-scattering observables. If the parameter posterior deviates from multivariate-normal, a sampling-based approach like MCMC has a clear advantage over methods that assume the Laplace approximation holds. We note that empirical coverage can serve as an important internal check for the analyst whose model or data may have additional, unaccounted-for uncertainties.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Simultaneous UV and optical study of O star winds and UV and optical covariability of O star winds

Simultaneous ultraviolet and optical observations of 10 bright O stars were organized in several observing campaigns lasting 3-6 days each. The observing campaigns included 12 observatories in the Northern hemisphere obtaining high resolution spectroscopy, photometry, and polarimetry, as well as 24-hour coverage with the IUE (International Ultraviolet Explorer) observatory. Over 600 high dispersion SWP spectra were acquired with IUE at both NASA and VILSPA for the completion of this work. The massive amount of data from these observing campaigns, both from IUE and the ground-based instruments, has been reduced and analyzed. The accompanying paper describes the data acquisition, analysis, and conclusions of the study performed. The most important results of this study are the strong confirmation of the ubiquitous variability of winds of O stars, and the critical correlation between rotation of the star and the wind variability as seen in the ultraviolet and optical spectral lines.

Nichols, Joy S.↗

Abiotic influences on continuous conifer forest structure across a subalpine watershed

Understanding the abiotic drivers of high-elevation forest physiognomy is essential for forecasting how mountain ecosystems will respond to emerging environmental pressures. Most prior studies of these relationships have relied on small samples of the full landscape, resulting in limited power to detect dominant covariates and their interactions. Here we report the first evaluation of abiotic influences on a complement of accurate, wall-to-wall estimates of conifer forest structure and composition at the watershed scale. In a subalpine conifer domain in the Colorado Rocky Mountains (USA), we developed a novel method for deriving stand structure metrics from waveform LiDAR data, which showed high fidelity with field inventory. We quantified the relationships between structural and compositional metrics and climate, topographic, edaphic, and geologic factors. Our results showed that peak snow water equivalent (SWE), snow disappearance rate, and elevation explained most of the variation in forest structure. The highest stand density, basal area, maximum canopy height, and quadratic mean diameter occurred in sites with SWE around one standard deviation below mean, but with long snow residence times. Stand density decreased linearly with elevation, while other metrics peaked between 3000 m and 3200 m. Substrate properties had weaker influence. Continuous mapping of through-canopy forest structure enabled our novel findings of the dominant role of snowpack in explaining structural and compositional variation, and of elevation thresholds. Our reproducible approach facilitates assessment of forest-topoclimate relationships in other conifer-dominated landscapes and improves understanding of the baseline patterns controlling forest structure, which is needed for predicting long-term ecological change.

forest ecology↗

Tracking Seasonal and Interannual Variability in Photosynthetic Downregulation in Response to Water Stress at a Temperate Deciduous Forest

Abstract The understanding and modeling of photosynthetic dynamics affected by climate variability can be highly uncertain. In this paper, we examined a well‐characterized eddy covariance site in a drought‐prone temperate deciduous broadleaf forest combining tower measurements and satellite observations. We find that an increase in spring temperature usually leads to enhanced spring gross primary production (GPP), but a GPP reduction in late growing season due to water limitation. We evaluated how well a coupled fluorescence‐photosynthesis model (SCOPE) and satellite data sets track the interannual and seasonal variations of tower GPP from 2007 to 2016. In SCOPE, a simple stress factor scaling of Vcmax as a linear function of observed predawn leaf water potential ( ψ pd ) shows a good agreement between modeled and measured interannual variations in both GPP and solar‐induced chlorophyll fluorescence (SIF) from the Global Ozone Monitoring Experiment‐2 (GOME‐2). The modeled and satellite‐observed changes in SIF yield are ~30% smaller than corresponding changes in light use efficiency (LUE) under severe stress, for which a common linear SIF to GPP scaling would underestimate the stress reduction in GPP. Overall, GOME‐2 SIF tracks interannual tower GPP variations better than satellite vegetations indices (VIs) representing canopy “greenness.” However, it is still challenging to attribute observed SIF variations unequivocally to greenness or physiological changes due to large GOME‐2 footprint. Higher‐resolution SIF data sets (e.g., TROPOMI) already show the potential to well capture the downregulation of late‐season GPP and could pave the way to better disentangle canopy structural and physiological changes in the future.

He, Liyin↗

Commissioning the H i Observing Mode of the Beam Former for the Cryogenically Cooled Focal L-band Array for the GBT (FLAG)

We present the results of commissioning observations for a new digital beam-forming back end for the Focal plane L-band Array for the Robert C. Byrd Green Bank Telescope (FLAG), a cryogenically cooled Phased Array Feed (PAF) with the lowest measured T {sub sys}/η of any PAF outfitted on a radio telescope to date. We describe the custom software used to apply beam-forming weights to the raw element covariances to create research-quality spectral-line images for the new fine-channel mode, study the stability of the beam weights over time, characterize FLAG’s sensitivity over a frequency range of 150 MHz, and compare the measured noise properties and observed distribution of neutral hydrogen emission from several extragalactic and Galactic sources with data obtained with the current single-pixel L-band receiver. These commissioning runs establish FLAG as the preeminent PAF receiver currently available for spectral-line observations on the world’s major radio telescopes.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Square-root algorithm for evaluating mismodeled process noise

As the application of sequential filters has grown, the need has arisen to evaluate the sensitivity of these filters to mismodeling of the random process. A numerically reliable square-root algorithm is developed for calculating the covariances of estimates from a sequential filter which incorrectly models process noise. Mismodeling is restricted to the correlation time and standard deviation of a random process represented as a first-order Gauss-Markov sequence. Using a computer program which employs this algorithm, a sensitivity analysis was performed for several types of earth-based tracking data from an interplanetary spacecraft.

Thornton, C. L.↗

Gravity, body mass and composition, and metabolic rate

The scale effects of increased gravitational loading by chronic centrifugation on metabolic rate and body composition in metabolically mature mammals were investigated. Individual oxygen consumption rates in groups of 12 each, 8-month-old, hamster, rats, guinea pigs, and rabbits were measured at weekly intervals at 1.0 g, then 2.0 g for 6 weeks. Metabolic rate was increased significantly in all species, and stabilized after 2 weeks at 2.0 g. Statistical analysis of the data revealed that the larger the animal the greater was the increase in mass-specific metabolic rate, or metabolic intensity, over the 1.0 g value for the same animal, with the result that the interspecies allometric scaling relationship between metabolic rate and total body mass is different at 2.0 g compared 10 1.0 g. Analysis of covariance shows that the postioning constant at 2.0 g is increased by 17% at 2.0 g at the P .001 level, and the exponent is increased by 8% at the P = 0.008 level. Thus, the hypothesis that augmented gravitational loading should shift the allometric relationship between metabolic rate and body size by an increase in both parameters is supported.

Pace, N.↗

A water-vapor radiometer error model

The water-vapor radiometer (WVR) is used to calibrate unpredictable delays in the wet component of the troposphere in geodetic microwave techniques such as very-long-baseline interferometry (VLBI) and Global Positioning System (GPS) tracking. Based on experience with Jet Propulsion Laboratory (JPL) instruments, the current level of accuracy in wet-troposphere calibration limits the accuracy of local vertical measurements to 5-10 cm. The goal for the near future is 1-3 cm. Although the WVR is currently the best calibration method, many instruments are prone to systematic error. In this paper, a treatment of WVR data is proposed and evaluated. This treatment reduces the effect of WVR systematic errors by estimating parameters that specify an assumed functional form for the error. The assumed form of the treatment is evaluated by comparing the results of two similar WVR's operating near each other. Finally, the observability of the error parameters is estimated by covariance analysis.

Beckman, B.↗

An improved model for the Earth's gravity field

An improved model for the Earth's gravity field, TEG-1, was determined using data sets from fourteen satellites, spanning the inclination ranges from 15 to 115 deg, and global surface gravity anomaly data. The satellite measurements include laser ranging data, Doppler range-rate data, and satellite-to-ocean radar altimeter data measurements, which include the direct height measurement and the differenced measurements at ground track crossings (crossover measurements). Also determined was another gravity field model, TEG-1S, which included all the data sets in TEG-1 with the exception of direct altimeter data. The effort has included an intense scrutiny of the gravity field solution methodology. The estimated parameters included geopotential coefficients complete to degree and order 50 with selected higher order coefficients, ocean and solid Earth tide parameters, Doppler tracking station coordinates and the quasi-stationary sea surface topography. Extensive error analysis and calibration of the formal covariance matrix indicate that the gravity field model is a significant improvement over previous models and can be used for general applications in geodesy.

Tapley, B. D.↗

The northernmost hyperspectral FLoX sensor dataset for monitoring of high-Arctic tundra vegetation phenology and Sun-Induced Fluorescence (SIF)

A hyperspectral field sensor (FloX) was installed in Adventdalen (Svalbard, Norway) in 2019 as part of the Svalbard Integrated Arctic Earth Observing System (SIOS) for monitoring vegetation phenology and Sun-Induced Chlorophyll Fluorescence (SIF) of high-Arctic tundra. This northernmost hyperspectral sensor is located within the footprint of a tower for long-term eddy covariance flux measurements and is an integral part of an automatic environmental monitoring system on Svalbard (AsMovEn), which is also a part of SIOS. One of the measurements that this hyperspectral instrument can capture is SIF, which serves as a proxy of gross primary production (GPP) and carbon flux rates. This paper presents an overview of the data collection and processing, and the 4-year (2019–2021) datasets in processed format are available at: https://thredds.met.no/thredds/catalog/arcticdata/infranor/NINA-FLOX/raw/catalog.html associated with https://doi.org/10.21343/ZDM7-JD72 under a CC-BY-4.0 license. Results obtained from the first three years in operation showed interannual variation in SIF and other spectral vegetation indices including MERIS Terrestrial Chlorophyll Index (MTCI), EVI and NDVI. Synergistic uses of the measurements from this northernmost hyperspectral FLoX sensor, in conjunction with other monitoring systems, will advance our understanding of how tundra vegetation responds to changing climate and the resulting implications on carbon and energy balance.

hyperspectral field sensor↗

A diagnostic study of vertical fluxes in cumulus clouds using model output data

Midlatitude supercell, Florida sea-breeze convection, and tropical squall line simulations were performed using the Colorado State University Regional Atmospheric Modeling System which employed the non-hydrostatic, fully compressible, equations with parameterized microphysics. The time evolution of the vertical velocity variance (VVV) is especially interesting since it is a measure of the strength of convection. This variance exhibits striking similarities when analyzed for the aforementioned cases which may indicate that all convection is fundamentally similar. Vertical mass and moisture covariances appear strongly linked to VVV, so it may be the appropriate variable on which to base a hybrid cumulus parameterization scheme.

Weissbluth, M. J.↗

Surface Water Mass Transformation in the Southern Ocean: The Role of Eddies Revisited

The water mass transformation (WMT) framework describes how water of one class, such as a discrete interval of density, is converted into another class via air–sea fluxes or interior mixing processes. Here, this paper investigates how this process is modified at the surface when mesoscale ocean eddies are present, using a state-of-the-art high-resolution climate model with reasonable fidelity in the Southern Ocean. The method employed is to coarse-grain the high-resolution model fields to remove eddy signatures, and compare the results with those from the full model fields. This method shows that eddies reduced the WMT by 2–4 Sv (10%–20%; 1 Sv ≡ 10 6 m 3 s −1 ) over a wide range of densities, from typical values of 20 Sv in the smoothed case. The corresponding water mass formation was reduced by 40% at one particular density increment, namely, between 1026.4 and 1026.5 kg m −3 , which corresponds to the lighter end of the range of Indian Ocean Mode Water in the model. The effect of eddies on surface WMT is decomposed into three terms: direct modulation of the density outcrops, then indirectly, by modifying the air–sea density flux, and the combined effect of the two, akin to a covariance. It is found that the first and third terms dominate, i.e., smoothing the outcrops alone has a significant effect, as does the combination of smoothing both outcrops and density flux distributions, but smoothing density flux fields alone has little effect. Results from the coarse-graining method are compared to an alternative approach of temporally averaging the data. Implications for climate model resolution are also discussed.

54 ENVIRONMENTAL SCIENCES↗

Evaluating various composite sampling modes for detecting pathogenic SARS-CoV-2 virus in raw sewage

Inadequate sampling approaches to wastewater analyses can introduce biases, leading to inaccurate results such as false negatives and significant over- or underestimation of average daily viral concentrations, due to the sporadic nature of viral input. To address this challenge, we conducted a field trial within the University of Tennessee residence halls, employing different composite sampling modes that encompassed different time intervals (1 h, 2 h, 4 h, 6 h, and 24 h) across various time windows (morning, afternoon, evening, and late-night). Our primary objective was to identify the optimal approach for generating representative composite samples of SARS-CoV-2 from raw wastewater. Utilizing reverse transcription-quantitative polymerase chain reaction, we quantified the levels of SARS-CoV-2 RNA and pepper mild mottle virus (PMMoV) RNA in raw sewage. Our findings consistently demonstrated that PMMoV RNA, an indicator virus of human fecal contamination in water environment, exhibited higher abundance and lower variability compared to pathogenic SARS-CoV-2 RNA. Significantly, both SARS-CoV-2 and PMMoV RNA exhibited greater variability in 1 h individual composite samples throughout the entire sampling period, contrasting with the stability observed in other time-based composite samples. Through a comprehensive analysis of various composite sampling modes using the Quade Nonparametric ANCOVA test with date, PMMoV concentration and site as covariates, we concluded that employing a composite sampler during a focused 6 h morning window for pathogenic SARS-CoV-2 RNA is a pragmatic and cost-effective strategy for achieving representative composite samples within a single day in wastewater-based epidemiology applications. This method has the potential to significantly enhance the accuracy and reliability of data collected at the community level, thereby contributing to more informed public health decision-making during a pandemic.

sampling timing↗

Using ground-based lidar data to investigate the water–vapor budget in the daytime atmospheric boundary layer

The moisture advection term in the water–vapor budget equation is investigated with a combination of a vertically-staring water–vapor lidar and Doppler lidar systems. These instruments make it possible to get the mean profile of moisture tendency and the latent heat flux (LHF) divergence. We use data of the Land–Atmosphere Feedback Experiment (LAFE) at the Atmospheric Radiation Measurement (ARM) Program’s Southern Great Plains (SGP) site, Oklahoma, USA, collected on 30 August 2017 between 15 and 24 UTC, which corresponds to 09 to 18 LT. The lidars provide turbulence resolving profiles of moisture and vertical wind fluctuations. The LHF profile is derived from the covariance of these moisture and vertical wind fluctuations. The mean boundary layer height z i is determined from the peak of the moisture variance. The results demonstrate that the combination of two remote sensing instruments can be applied for determining the dominant water–vapor budget terms, namely moisture tendency, latent heat flux divergence and moisture advection.

Advection↗

Statistical analysis of correlations in the x-ray induced Coulomb explosion of iodopyridine

Coulomb explosion imaging is a promising experimental tool to study individual molecules. Here, in this work simulation data for the x-ray induced Coulomb explosion of 2-iodopyridine is analyzed and the involved fragmentation dynamics are described. It is found that particular final ion momenta show correlations that reflect a collision of two atoms during the explosion. Variations of the proton kinetic energies can be associated with variations in the charge build-up time. Covariances of the forces during the explosion can be utilized to simplify the description of the dynamics in reduced dimensionality using only four collective coordinates.

74 ATOMIC AND MOLECULAR PHYSICS↗

A Predictive Prescription Framework for Stochastic Unit Commitment Using Boosting Ensemble Learning Algorithms

To take unit commitment (UC) decisions under uncertain load, most existing stochastic optimization (SO) frameworks adopt a generic representation of uncertainty. While load levels that materialize on a particular day are influenced by various covariates (such as the day of the week or temperature), SO frameworks typically disregard such side observations, wasting actionable information that could significantly enhance decision quality. Here, this article proposes a contextual SO (CSO) framework for UC under uncertain load, which can effectively exploit covariate observations in conjunction with a class of machine learning (ML) algorithms to improve the out-of-sample performance of UC decisions. It shows how three ML algorithms, adaptive boosting, gradient boosted trees, and extreme gradient boosting, can be used to this end, constituting the first application of these algorithms in any CSO framework. Using real-world data harvested from the New York ISO grid, we measure the out-of-sample performance of the framework in terms of total operation cost, shed load values, locational marginal prices, and total payments by the loads, against several benchmark methods proposed in the literature. The article has an online companion (Yurdakul et al.), wherein we present additional results and lay out further mathematical formulations used in this work.

42 ENGINEERING↗

Autonomous satellite orbit determination during the development phases of the global positioning system

An onboard navigation system was developed to aid the design and evaluation of algorithms used in autonomous satellite navigation with Global Positioning System (GPS) data. The performance of the algorithms designed for a GPS Receiver/Processor Assembly (R/PA) intended for LANDSAT-D was investigated during the development phases of the GPS (four to six satellites in the constellation). This evaluation emphasized the effects on the orbit determination accuracy of the expected user clock errors, GPS satellite visibility, force model approximations, and state and covariance propagation approximations. Results are presented giving the sensitivity of orbit determination accuracy to these constraints.

Dunham, J. B.↗

System identification for modeling for control of flexible structures

The major components of a design and operational flight strategy for flexible structure control systems are presented. In this strategy an initial distributed parameter control design is developed and implemented from available ground test data and on-orbit identification using sophisticated modeling and synthesis techniques. The reliability of this high performance controller is directly linked to the accuracy of the parameters on which the design is based. Because uncertainties inevitably grow without system monitoring, maintaining the control system requires an active on-line system identification function to supply parameter updates and covariance information. Control laws can then be modified to improve performance when the error envelopes are decreased. In terms of system safety and stability the covariance information is of equal importance as the parameter values themselves. If the on-line system ID function detects an increase in parameter error covariances, then corresponding adjustments must be made in the control laws to increase robustness. If the error covariances exceed some threshold, an autonomous calibration sequence could be initiated to restore the error enveloped to an acceptable level.

Mettler, Edward↗