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At least 1,225 records · Page 68

Potential mechanisms for cancer resistance in elephants and comparative cellular response to DNA damage in humans

Here, evolutionary medicine may provide insights into human physiology and pathophysiology, including tumor biology. To identify mechanisms for cancer resistance in elephants and compare cellular response to DNA damage among elephants, healthy human controls, and cancer-prone patients with Li-Fraumeni syndrome (LFS). Design, Setting, and Participants A comprehensive survey of necropsy data was performed across 36 mammalian species to validate cancer resistance in large and long-lived organisms, including elephants (n=644). The African and Asian elephant genomes were analyzed for potential mechanisms of cancer resistance. Peripheral blood lymphocytes from elephants, healthy human controls, and patients with LFS were tested in vitro in the laboratory for DNA damage response. The study included African and Asian elephants (n=8), patients with LFS (n=10), and age-matched human controls (n=11). Human samples were collected at the University of Utah between June 2014 and July 2015. Exposures Ionizing radiation and doxorubicin. Cancer mortality across species was calculated and compared by body size and life span. The elephant genome was investigated for alterations in cancer-related genes. DNA repair and apoptosis were compared in elephant vs human peripheral blood lymphocytes. Across mammals, cancer mortality did not increase with body size and/or maximum life span (eg, for rock hyrax, 1% [95% CI, 0%-5%]; African wild dog, 8% [95% CI, 0%-16%]; lion, 2% [95% CI, 0%-7%]). Despite their large body size and long life span, elephants remain cancer resistant, with an estimated cancer mortality of 4.81% (95% CI, 3.14%-6.49%), compared with humans, who have 11% to 25% cancer mortality. While humans have 1 copy (2 alleles) of TP53, African elephants have at least 20 copies (40 alleles), including 19 retrogenes (38 alleles) with evidence of transcriptional activity measured by reverse transcription polymerase chain reaction. In response to DNA damage, elephant lymphocytes underwent p53-mediated apoptosis at higher rates than human lymphocytes proportional to TP53 status (ionizing radiation exposure: patients with LFS, 2.71% [95% CI, 1.93%-3.48%] vs human controls, 7.17% [95% CI, 5.91%-8.44%] vs elephants, 14.64% [95% CI, 10.91%-18.37%]; P<.001; doxorubicin exposure: human controls, 8.10% [95% CI, 6.55%-9.66%] vs elephants, 24.77% [95% CI, 23.0%-26.53%]; P<.001). Compared with other mammalian species, elephants appeared to have a lower-than-expected rate of cancer, potentially related to multiple copies of TP53. Compared with human cells, elephant cells demonstrated increased apoptotic response following DNA damage. These findings, if replicated, could represent an evolutionary-based approach for understanding mechanisms related to cancer suppression.

60 APPLIED LIFE SCIENCES↗

Three-dimensional modeling of outcrop-to-outcrop hydrothermal circulation on the eastern flank of the Juan de Fuca Ridge

We present three-dimensional simulations of coupled fluid and heat transport in the ocean crust, to explore patterns and controls on ridge-flank hydrothermal circulation on the eastern flank of the Juan de Fuca Ridge. Field studies have shown that there is large-scale fluid flow in the volcanic ocean crust in this region, including local convection and circulation between two basement outcrops separated by ~50 km. New simulations include an assessment of crustal permeability and aquifer thickness, outcrop permeability, the potential influence of multiple discharging outcrops, and a comparison between two-dimensional (profile) and three-dimensional representations of the natural system. Field observations that help to constrain new simulations include a modest range of flow rates between recharging and discharging outcrops, secondary convection adjacent to the recharging outcrop, crustal permeability determinations made in boreholes, and the lack of a regional seafloor heat flux anomaly as a consequence of advective heat loss from the crust. Three-dimensional simulations are most consistent with field observations when models use a crustal permeability of 3 ×10 -13 to 2 × 10 -12 m 2 , and the crustal aquifer is ≤300 m thick, values consistent with borehole observations. Here, we find fluid flow rates and crustal cooling efficiencies that are an order of magnitude greater in three-dimensional simulations than in two-dimensional simulations using equivalent properties. Lastly, simulations including discharge from an additional outcrop can also replicate field observations but tend to increase the overall rate of recharge and reduce the flow rate at the primary discharge site.

58 GEOSCIENCES↗

Relationships among top‐of‐atmosphere radiation and atmospheric state variables in observations and CESM

Abstract A detailed examination is made in both observations and the Community Earth System Model (CESM) of relationships among top‐of‐atmosphere radiation, water vapor, temperatures, and precipitation for 2000–2014 to assess the origins of radiative perturbations and climate feedbacks empirically. The 30‐member large ensemble coupled runs are analyzed along with one run with specified sea surface temperatures for 1994 to 2005 (to avoid volcanic eruptions). The vertical structure of the CESM temperature profile tends to be top heavy in the model, with too much deep convection and not enough lower stratospheric cooling as part of the response to tropospheric heating. There is too much absorbed solar radiation (ASR) over the Southern Oceans and not enough in the tropics, and El Niño–Southern Oscillation (ENSO) is too large in amplitude in this version of the model. However, the covariability of monthly mean anomalies produces remarkably good replication of most of the observed relationships. There is a lot more high‐frequency variability in radiative fluxes than in temperature, highlighting the role of clouds and transient weather systems in the radiation statistics. Over the Warm Pool in the tropical western Pacific and Indian Oceans, where nonlocal effects from the Walker circulation driven by the ENSO events are important, several related biases emerge: in response to high SST anomalies there is more precipitation, water vapor, and cloud and less ASR and outgoing longwave radiation in the model than observed. Different model global mean trends are evident, however, possibly hinting at too much positive cloud feedback in the model.

Trenberth, Kevin E.↗

Excavating Stickney crater at Phobos

Stickney crater, at 9 km across, dominates the morphology of ~22 km Phobos, the larger of the two moons of Mars. The Stickney impact event had global repercussions for Phobos, including extensive resurfacing and fracturing of the moon. Understanding the initial conditions and dynamical consequences of the collision is necessary to test competing hypotheses for the origin of peculiar grooved terrain that striates much of the surface. Previous modeling of the impact event was unable to replicate Stickney without globally fragmenting the satellite. We also describe high-resolution numerical simulations that successfully generate Stickney crater while maintaining the large-scale structure of Phobos. Target porosity, which is estimated to be significant, aids in keeping the moon intact. Damage follows patterns centered on Stickney that are inconsistent with the observed alignment of grooved terrain on Phobos. We ejected low-velocity boulders at shallow angles in sufficient numbers to support a rolling-boulder origin for grooved terrain.

58 GEOSCIENCES↗

Electrostatic analyzer measurements of ionospheric thermal ion populations

Here, we define the observational parameter regime necessary for observing low-altitude ionospheric origins of high-latitude ion upflow/outflow. We present measurement challenges and identify a new analysis technique which mitigates these impediments. To probe the initiation of auroral ion upflow, it is necessary to examine the thermal ion population at 200-350 km, where typical thermal energies are tenths of eV. Interpretation of the thermal ion distribution function measurement requires removal of payload sheath and ram effects. We use a 3-D Maxwellian model to quantify how observed ionospheric parameters such as density, temperature, and flows affect in situ measurements of the thermal ion distribution function. We define the viable acceptance window of a typical top-hat electrostatic analyzer in this regime and show that the instrument's energy resolution prohibits it from directly observing the shape of the particle spectra. To extract detailed information about measured particle population, we define two intermediate parameters from the measured distribution function, then use a Maxwellian model to replicate possible measured parameters for comparison to the data. Liouville's theorem and the thin-sheath approximation allow us to couple the measured and modeled intermediate parameters such that measurements inside the sheath provide information about plasma outside the sheath. We apply this technique to sounding rocket data to show that careful windowing of the data and Maxwellian models allows for extraction of the best choice of geophysical parameters. More widespread use of this analysis technique will help our community expand its observational database of the seed regions of ionospheric outflows.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Wettability impact on supercritical CO 2 capillary trapping: Pore-scale visualization and quantification

How the wettability of pore surfaces affects supercritical (sc) CO 2 capillary trapping in geologic carbon sequestration (GCS) is not well understood, and available evidence appears inconsistent. Using a high-pressure micromodel-microscopy system with image analysis, we studied the impact of wettability on scCO 2 capillary trapping during short-term brine flooding (80 s, 8–667 pore volumes). Experiments on brine displacing scCO 2 were conducted at 8.5 MPa and 45°C in water-wet (static contact angle $\theta$ $20° ± 8°$) and intermediate-wet ($\theta$ $94° ± 13°$) homogeneous micromodels under four different flow rates (capillary number Ca ranging from 9 x 10 -6 to 8 x 10 -4 ) with a total of eight conditions (four replicates for each). Brine invasion processes were recorded and statistical analysis was performed for over 2000 images of scCO 2 saturations, and scCO 2 cluster characteristics. The trapped scCO 2 saturation under intermediate-wet conditions is 15% higher than under water-wet conditions under the slowest flow rate ( Ca 9 x 10 -6 ). Based on the visualization and scCO 2 cluster analysis, we show that the scCO 2 trapping process in our micromodels is governed by bypass trapping that is enhanced by the larger contact angle. Smaller contact angles enhance cooperative pore filling and widen brine fingers (or channels), leading to smaller volumes of scCO 2 being bypassed. Increased flow rates suppress this wettability effect.

54 ENVIRONMENTAL SCIENCES↗

Cost and Time Effective Lithography of Reusable Millimeter Size Bone Tissue Replicas With Sub‐15 nm Feature Size on A Biocompatible Polymer

Abstract The ability to replicate the microenvironment of biological tissues creates unique biomedical possibilities for stem cell applications. Current fabrication methods are limited by either the control on feature size and shape, or by the throughput and size of the replicas. Here, a novel platform is reported that combines thermal scanning probe lithography (tSPL) with innovative methodologies for the low‐cost and high‐throughput nanofabrication of large area quasi‐3D bone tissue replicas with high fidelity, sub‐15 nm lateral precision, and sub‐2 nm vertical resolution. This bio‐tSPL platform features a biocompatible polymer resist that withstands multiple cell culture cycles, allowing the reuse of the replicas, further decreasing costs and fabrication times. The as‐fabricated replicas support the culture and proliferation of human induced mesenchymal stem cells, which display broad therapeutic and biomedical potential. Furthermore, it is demonstrated that bio‐tSPL can be used to nanopattern the bone tissue replicas with amine groups, for subsequent tissue‐mimetic biofunctionalization. The achieved level of time and cost‐effectiveness, as well as the cell compatibility of the replicas, make bio‐tSPL a promising platform for the production of tissue‐mimetic replicas to study stem cell‐tissue microenvironment interactions, test drugs, and ultimately harness the regenerative capacity of stem cells and tissues for biomedical applications.

Liu, Xiangyu↗

Beyond Substrates: Strain Engineering of Ferroelectric Membranes

Strain engineering in perovskite oxides provides for dramatic control over material structure, phase, and properties, but is restricted by the discrete strain states produced by available high-quality substrates. Here, using the ferroelectric BaTiO3, production of precisely strain-engineered, substrate-released nanoscale membranes is demonstrated via an epitaxial lift-off process that allows the high crystalline quality of films grown on substrates to be replicated. In turn, fine structural tuning is achieved using interlayer stress in symmetric trilayer oxide-metal/ferroelectric/oxide-metal structures fabricated from the released membranes. Additionally, in devices integrated on silicon, the interlayer stress provides deterministic control of ordering temperature (from 75 to 425 °C) and releasing the substrate clamping is shown to dramatically impact ferroelectric switching and domain dynamics (including reducing coercive fields to <10 kV cm-1 and improving switching times to <5 ns for a 20 µm diameter capacitor in a 100-nm-thick film). In devices integrated on flexible polymers, enhanced room-temperature dielectric permittivity with large mechanical tunability (a 90% change upon ±0.1% strain application) is demonstrated. This approach paves the way toward the fabrication of ultrafast CMOS-compatible ferroelectric memories and ultrasensitive flexible nanosensor devices, and it may also be leveraged for the stabilization of novel phases and functionalities not achievable via direct epitaxial growth.

36 MATERIALS SCIENCE↗

Broadband THz Modulation via Solid–State Organic Electrochemical Devices

The sub-Terahertz and Terahertz bands play a critical role in next-generation wireless communication and sensing technologies, thanks to the large amount of available bandwidth in this spectral regime. While long-wavelength (microwave to mm-Wave) and short-wavelength (near-infrared to ultraviolet) devices are well-established and studied, the sub-THz to THz regime remains relatively underexplored and underutilized. Traditional approaches used in the aforementioned spectral regions are more difficult to replicate in the THz band, leading to the need for the development of novel devices and structures that can manipulate THz radiation effectively. Herein a novel organic, solid-state electrochemical device is presented, capable of achieving modulation depths of over 90% from ≈500 nm of a conducting polymer that switches conductivity over a large dynamic range upon application of an electronically controllable external bias. The stability of such devices under long-term, repeated voltage switching, as well as continuous biasing at a single voltage, is also explored. Switching stabilities and long-term bias stabilities are achieved over two days for both use cases. Additionally, both depletion mode (always “ON”) and accumulation mode (always “OFF”) operation are demonstrated. These results suggest applications of organic electrochemical THz modulators in large area and flexible implementations.

36 MATERIALS SCIENCE↗

Manipulating the Assembly and Architecture of Fibrillar Silk

Silk is a unique and exceptionally strong biological material. However, no synthetic method has yet come close to replicating the properties of natural silk. This shortfall is attributed to an insufficient understanding of both silk nanofibril structure and the mechanism of formation. Here in situ atomic force microscopy (AFM) and photo-induced force microscopy (PiFM) is utilized to investigate the formation process and define the basic structural paradigm of individual silk nanofibrils. By visualizing the multistage process of silk nanofibril formation, the importance of conformational transformations along the assembly pathway is revealed. Unfolded silk structures initially accumulate into amorphous clusters, which then evolve into crystal nuclei via conformational transformation into β-crystallites. Nanofibril elongation then occurs through the attachment of silk molecules at a single end of the nanofibril tip; this is facilitated through the formation of a new amorphous cluster that then repeats the aforementioned conformational transformation. However, enzymatic digestion of the amorphous regions leads to direct, rapid elongation of β-crystalline fibers. These findings imply that the energy landscape is characterized by shallow minima associated with intermediate states, which can be eliminated by introducing β-crystallites, and motivate research into the directed modification of the silk assembly pathway to select for features beneficial to specific applications.

36 MATERIALS SCIENCE↗

Molecular and Topographical Organization: Influence on Cicada Wing Wettability and Bactericidal Properties

Numerous natural surfaces have micro/nanostructures that result in extraordinary functionality, such as superhydrophobicity, self-cleaning, antifogging, and antimicrobial properties. One such example is the cicada wing, where differences in nanopillar geometry and composition among species can impact and influence the degree of exhibited properties. To understand the relationships between surface topography and chemical composition with multifunctionality, the wing properties of Neotibicen pruinosus (superhydrophobic) and Magicicada cassinii (hydrophobic) cicadas are investigated at time points after microwave-assisted extraction of surface molecules to characterize the chemical contribution to nanopillar functionality. Electron microscopy of the wings throughout the extraction process illustrates nanoscale topographical changes, while concomitant changes in hydrophobicity, bacterial fouling, and bactericidal properties are also measured. Extract analysis reveals the major components of the nanostructures to be fatty acids and saturated hydrocarbons ranging from C17 to C44. Effects on the antimicrobial character of a wing surface with respect to the extracted chemicals suggest that the molecular composition of the nanopillars plays both a direct and an indirect role in concert with nanopillar geometry. The data presented not only correlates the nanopillar molecular organization to macroscale functional properties, but it also presents design guidelines to consider during the replication of natural nanostructures onto engineered substrates to induce desired properties.

59 BASIC BIOLOGICAL SCIENCES↗

Nanocomposite‐Seeded Epitaxial Growth of Single‐Domain Lithium Niobate Thin Films for Surface Acoustic Wave Devices

Epitaxial lithium niobate (LNO) thin films are an attractive material for devices across a broad range of fields, including optics, acoustics, and electronics. These applications demand high‐quality thin films without in‐plane growth domains to reduce the optical/acoustical losses and optimize efficiency. Twin‐free single‐domain‐like growth has been achieved previously, but it requires specific growth conditions that might be hard to replicate. In this work, a versatile nanocomposite‐seeded approach is demonstrated as an effective approach to grow single‐domain epitaxial lithium niobate thin films. Films are grown through a pulsed laser deposition method and growth conditions are optimized to achieve high‐quality epitaxial film. A comprehensive microstructure characterization is performed and optical properties are measured. A piezoelectric acoustic resonator device is developed to demonstrate the future potential of the nanocomposite‐seeded approach for high‐quality LNO growth for radio frequency (RF) applications.

36 MATERIALS SCIENCE↗

Subvoxel Control of Fiber Orientation via Multidirectional Shearing in 3D Printing

Anisotropy, the characteristic of materials exhibiting different properties based on their direction, is widespread in nature. Conventional manufacturing techniques often fall short in recreating such complex anisotropy. While 3D printing allows for precise fiber deposition in anisotropic composites, previous studies have only achieved bulk reorientation of fibers at the voxel level in two dimensions. This limits the replication of localized 3D anisotropies found in natural materials. To address this, a novel 3D printing technique is presented that enables subvoxel control of fiber orientation in all three directions using multidirectional shearing via nozzle rotation and inclination. The fiber orientation control in these experimental tests is driven by a numerical model, enabling a fully digital approach to program microstructures within a strand. This programmability is demonstrated through mechanical and thermal tests, illustrating a localized and controllable response to external stimuli. Achieving such complex anisotropy holds potential across several fields, including wearables and biomedical implants, lightweight composite structures, and energy storage technologies such as batteries and supercapacitors.

3D printing↗

Approximately 15% of Miscanthus yield is lost at current commercial cutting heights in Iowa

Various works have quantitatively characterized the effects of environmental and management factors on Miscanthus x giganteus Greef et Deu (mxg) yield and, therefore, anticipated land requirement per unit production. However, little work has addressed the effects of cutting height, which may significantly contribute to the difference between the standing aboveground biomass at harvest (i.e., biological yield) and harvested yield. This study quantitatively characterized the effect of cutting height using a replicated nitrogen trial of a 5-year-old mxg stand in southeast Iowa and related this information to observations of cutting height in nearby commercial fields. Nitrogen fertilizer did not significantly change the relationship of the stem segment mass to length, and overall, a 1-cm stem segment contributes 0.5% of the total stem biomass within the bottom 44 cm of the stem. This results in an average harvest loss of 15% of the aboveground standing biomass when cutting at 30 cm, typically seen in commercial mxg fields in eastern Iowa. Cutting height should be considered when accurately predicting commercial mxg harvest yields and changes in soil organic carbon in a commercial mxg agroecosystem.

60 APPLIED LIFE SCIENCES↗

The economics of numbering up a chemical process enterprise

Chemical–processing plants that can be numbered up by installing and operating many replicate facilities are economically and technically well suited for the conversion of geographically distributed sources of renewable or waste carbon into fuels or chemicals. Examples from the manufacture of chemicals and the installation of flue gas treatment technology suggest that the relative cost diminution should correlate through a power law (Cost/Cost 1 ∝ E –a ) with E, a measure of the experience of operating those facilities and/or the number of units that are mass manufactured and installed. In conclusion, the exponent, a, can be related to the complexity of the process and the characteristics of the products.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Thin film initiation of cracks for fracture toughness measurements in epoxy resins

ABSTRACT The first step in accurately measuring the fracture toughness of a polymeric material is to generate a sharp crack in the sample. Often this is accomplished by tapping a razor blade into the sample, allowing a natural crack to grow; however, it can be difficult to control the crack propagation. Alternate methods for initial crack generation are investigated, including scoring the sample with a razor blade and inserting thin films or foils into the samples during cure. Fluoropolymer films and aluminum and stainless steel foils of various thicknesses are examined in a number of epoxy‐amine resins with a range of toughness and glass transition values. None of the alternative methods replicate the results of starting with a natural crack. Furthermore, it is difficult to form satisfactory test samples using fluoropolymer films. For relative toughness comparisons, either the scoring method or thin, ≤25.4 μm, foils can be used to initiate cracks with similar results. © 2016 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2016 , 133 , 44364.

McAninch, Ian M.↗

Extrusion‐Based Printing of Nanostructured Fatty Acid Gels Incorporated in Hydrogels

Soft materials with unique nanostructures such as lamellar, hexagonal, and cubic morphologies can replicate complex structures that have potential in various fields, including biomedical and industrial applications. However, a key challenge in advancing the broader applications of 3D printing for these nanostructured soft materials is insufficient mechanical properties that hinder their printability and compromise structural stability in the final product. In this study, the suitability of a fatty acid‐based lamellar gel is evaluated for direct extrusion‐based 3D printing. Here, the lamellar gel with varying water content is integrated with a photocurable hydrogel to preserve the shape and stability of the final prints. Complex 2D and 3D design patterns are used to assess extrusion behavior, structural stability, and print precision under varying pressures. Small‐angle X‐ray Scattering (SAXS) measurements reveal the formation of lamellar nanostructures and confirm their retention after photocuring in various gels. Rheological analysis confirms that these gels exhibit key properties suitable for extrusion‐based 3D printing, such as shear‐thinning behavior. Additionally, tensile testing is conducted to evaluate the mechanical properties across cured print samples. This study underscores the potential of nanostructured gels as a robust and versatile platform, facilitating the development of materials engineered for various applications.

36 MATERIALS SCIENCE↗

Deducing the EOS of dense neutron star matter with machine learning

Abstract The interior of a neutron star is a unique astrophysical laboratory for studying matter at extreme densities and pressures beyond what is replicable in terrestrial experiments. While there is no direct way to simulate the interior of these stars, one promising avenue to learning more about the equation of state (EOS) of such matter is through X‐rays emitted from the star's surface. The current state‐of‐the‐art method for inference of EOS from a star's X‐ray spectra uses piece‐wise, simulation‐based likelihoods that rely on theoretical assumptions complicated by systematic uncertainties. To reduce the dimensionality of the problem, this method infers macroscopic properties of the star (mass and radius) from emitted X‐ray spectra, and from those quantities infers the EOS. This work approaches the same problem using machine learning techniques, demonstrating a series of enhancements to the current state‐of‐the‐art by realistic uncertainty quantification and reducing the need for theoretical assumptions. We also demonstrate novel inference of the EOS directly from high‐dimensional simulated X‐ray spectra from neutron stars that negate the need for a piece‐wise approach. This inference allows for a natural propagation of uncertainties from the X‐ray spectra by conditioning the discussed networks on realistic sources of uncertainty for each star.

79 ASTRONOMY AND ASTROPHYSICS↗