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At least 1,207 records · Page 67

Comparing the response of the indigenous microbial community to crude oil amendment in oxic versus hypoxic conditions

The Caspian Sea is the world’s largest landlocked saline lake which lies between Europe and Asia. This region is particularly known for its large-scale oil reserves, pipelines, and drilling activities, which have contributed to the environmental decline of this lake. In addition to pollution from the petroleum industry, drainage from various river basins brings an influx of residential, industrial, and agricultural effluents that induce eutrophication and hypoxic conditions in deeper, colder waters, creating an oxygen gradient. The temperature and oxygen stratification in this environment has presented a unique opportunity to investigate the potential of the biodegradative processes carried out by the indigenous microbial community. We believe these indigenous microbes possess different metabolic capabilities to degrade oil as they adapted to declining oxygen concentrations and temperatures with increasing depths over a prolonged period. Hence, community structure and composition will vary with depth. Microcosms were set up to observe the indigenous microbial reaction after a 60 ppm native crude oil amendment over 115 days. Surface water microcosms were incubated at 28ºC and aerated while deep water microcosms were incubated at 8ºC under anaerobic conditions. These two environmental conditions represent the temperature and oxygen extremes along the gradient and were selected as we try to simulate the indigenous community’s response to this oil contamination. DNA was extracted and amplified from these microcosms and sequenced. Bioinformatic analysis was performed to track changes in the abundance of taxa present and biodiversity over different time points to show the progression of community structure. All microcosms showed the presence of hydrocarbon-degrading phyla, whose presence is consistent with other reports from oil-enriched environments. However, distinct communities were observed in oxic versus hypoxic microcosms. Orders of Bacteria related to sulfate and nitrogen cycling were found in hypoxic microcosms, indicating a possible mechanism for the anaerobic biodegradation of crude oil. GC-MS analysis of initial and final microcosms also provided evidence of degradation of hydrocarbon fractions in both warm, oxic and cold, hypoxic conditions.

59 BASIC BIOLOGICAL SCIENCES↗

Evolvable Neural Software System

The Evolvable Neural Software System (ENSS) is composed of sets of Neural Basis Functions (NBFs), which can be totally autonomously created and removed according to the changing needs and requirements of the software system. The resulting structure is both hierarchical and self-similar in that a given set of NBFs may have a ruler NBF, which in turn communicates with other sets of NBFs. These sets of NBFs may function as nodes to a ruler node, which are also NBF constructs. In this manner, the synthetic neural system can exhibit the complexity, three-dimensional connectivity, and adaptability of biological neural systems. An added advantage of ENSS over a natural neural system is its ability to modify its core genetic code in response to environmental changes as reflected in needs and requirements. The neural system is fully adaptive and evolvable and is trainable before release. It continues to rewire itself while on the job. The NBF is a unique, bilevel intelligence neural system composed of a higher-level heuristic neural system (HNS) and a lower-level, autonomic neural system (ANS). Taken together, the HNS and the ANS give each NBF the complete capabilities of a biological neural system to match sensory inputs to actions. Another feature of the NBF is the Evolvable Neural Interface (ENI), which links the HNS and ANS. The ENI solves the interface problem between these two systems by actively adapting and evolving from a primitive initial state (a Neural Thread) to a complicated, operational ENI and successfully adapting to a training sequence of sensory input. This simulates the adaptation of a biological neural system in a developmental phase. Within the greater multi-NBF and multi-node ENSS, self-similar ENI s provide the basis for inter-NBF and inter-node connectivity.

Curtis, Steven A.↗

Stress Analyzer

SPATE 900 Dynamic Stress Analyzer is an acronym for Stress Pattern Analysis by Thermal Emission. It detects stress-induced temperature changes in a structure and indicates the degree of stress. Ometron, Inc.'s SPATE 9000 consists of a scan unit and a data display. The scan unit contains an infrared channel focused on the test structure to collect thermal radiation, and a visual channel used to set up the scan area and interrogate the stress display. Stress data is produced by detecting minute temperature changes, down to one-thousandth of a degree Centigrade, resulting from the application to the structure of dynamic loading. The electronic data processing system correlates the temperature changes with a reference signal to determine stress level.

Source record↗

Mechanical behavior of ultralight nickel metamaterial

The mechanical response of ultralight kagomé structures consisting of hollow nickel (Ni) nanotubes and solid Ni nanorods to compression is studied using molecular dynamics simulations. In both kagomé architectures, 16[112] Shockley partial dislocations and twin formation are observed under compression. The structure made from solid nanorods shows deformation near both the nodes and beams of the kagomé lattice. The hollow kagomé architecture has a higher yield point than the solid kagomé structure. The deformation in the hollow nanotube structure is mostly localized in the nodal region for strains less than 11%. At higher strains, the deformation sets in all the struts and nodes of the hollow kagomé lattice. Owing to this two-stage deformation mechanism, the hollow Ni nanotube kagomé structure shows less bending and greater toughness than the solid Ni nanorod kagomé architecture.

Rajak, Pankaj (ORCID:0000000263446056)↗

Composition design of high-entropy alloys with deep sets learning

High entropy alloys (HEAs) are an important material class in the development of next-generation structural materials, but the astronomically large composition space cannot be efficiently explored by experiments or first-principles calculations. Machine learning (ML) methods might address this challenge, but ML of HEAs has been hindered by the scarcity of HEA property data. In this work, the EMTO-CPA method was used to generate a large HEA dataset (spanning a composition space of 14 elements) containing 7086 cubic HEA structures with structural properties, 1911 of which have the complete elastic tensor calculated. The elastic property dataset was used to train a ML model with the Deep Sets architecture. The Deep Sets model has better predictive performance and generalizability compared to other ML models. Association rule mining was applied to the model predictions to describe the compositional dependence of HEA elastic properties and to demonstrate the potential for data-driven alloy design.

36 MATERIALS SCIENCE↗

Failure detection and accommodation in structural dynamics systems using analytic redundancy

The concept of analytic redundancy is extended to identify nonzero constant output failures in large spacecraft active control sensors and actuators, using a set of distributed sensors which do not nominally produce equivalent signals but are related through the structural dynamics of the system. The suboptimal technique uses a Sequential Probability Ratio Test on the residual sequence of a Kalman filter based on a modal structure model, to determine failure of a component based on an assumed failure hypothesis. The specific failure is identified and then the Kalman filter gains are reconfigured for the identified remaining working sensor set. Experimental data using an apparatus whose dynamics are representative of a large spacecraft show the nominal filter performance under failed and unfailed conditions.

Williams, J. P.↗

Laminar Dust Flames: A Program of Microgravity and Ground Based Studies at McGill

Fundamental knowledge of heterogeneous combustion mechanisms is required to improve utilization of solid fuels (e.g. coal), safe handling of combustible dusts in industry, and solid propulsion systems. The objective of the McGill University research program on dust combustion is to obtain a reliable set of data on basic combustion parameters for dust suspensions (i.e. laminar burning velocity, flame structure, quenching distance, flammability limits, etc.) over a range of particle sizes, dust concentrations, and types of fuel. This set of data then permits theoretical models to be validated and, when necessary, new models to be developed to describe the detailed reaction mechanisms and transport processes. Microgravity is essential to the generation of a uniform dust suspension of arbitrary particle size and concentration. When particles with a characteristic size on the order of tens of microns are suspended, they rapidly settle in a gravitational field. To maintain a particulate in suspension for time duration adequate to carry out combustion experiments invariably requires continuous convective flow in excess of the gravitational settling velocity (which is comparable with and can even exceed the dust laminar burning velocity). This makes the experiments turbulent in nature and thus renders it impossible to study laminar dust flames. Even for small particle sizes on the order of microns, a stable laminar dust flow can be maintained only for relatively low dust concentrations at normal gravity conditions. High dust loading leads to gravitational instability of the dust cloud and to the formation of recirculation cells in the dust suspension in a confined volume, or to the rapid sedimentation of the dense dust cloud, as a whole, in an unconfined volume. Many important solid fuels such as carbon and boron also have low laminar flame speeds (of the order of several centimeters per second). Convection that occurs in combustion products due to buoyancy disrupts the low speed dust flames and makes observation of such flames at normal gravity difficult.

Goroshin, Sam↗

Studies in Nuclear and Nucleon Structure, and Neutrino Physics

We have provided training to students in skill sets relevant to job placement in areas of national needs. These trainings are tuned towards placing graduating students in the workforce related to sciences at national laboratories, national security, information systems, and data sciences. The support for undergraduate students will address the academic retention shortfalls by providing opportunities in mentored research experiences.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Structured programming: Principles, notation, procedure

Structured programs are best represented using a notation which gives a clear representation of the block encapsulation. In this report, a set of symbols which can be used until binding directives are republished is suggested. Structured programming also allows a new method of procedure for design and testing. Programs can be designed top down, that is, they can start at the highest program plane and can penetrate to the lowest plane by step-wise refinements. The testing methodology also is adapted to this procedure. First, the highest program plane is tested, and the programs which are not yet finished in the next lower plane are represented by so-called dummies. They are gradually replaced by the real programs.

JOST↗

Reduced Dependence on Redundant Fasteners in Secondary-Bonded Composite Structures Using Modified Epoxy Matrix Resins

This report describes a sub-set of over 20 experiments conducted to optimize materials and processes to maximize mechanical properties of the assembled joint. Infrared (IR) spectroscopy was used to measure the chemical state of the ER surface after primary cure. Laminates were fabricated with various HR and ER layer thicknesses, inspected using ultrasonic testing, and mechanically tested to measure fracture toughness.

Frank L Palmieri↗

GRAIL Refinements to Lunar Seismic Structure

The present ]day internal structure of the Moon provides insight not only into its own formation and evolution, but also that of all rocky planetary bodies. The most direct way to probe a planet fs interior structure is through seismology. As part of the Apollo lunar missions, four seismometers were deployed on the nearside surface of the Moon between the years 1969 and 1972. These instruments operated continuously until 1977, forming the only substantial extraterrestrial seismic data set in existence. These data have been used to constrain various aspects of the seismic velocity and density structure of the Moon. Typical 1-D models recognize a 30-60 km thick crust overlying a nearly constant ]velocity mantle, and extend to a depth of approximately 1000 km, below which the lack of penetrating moonquake ray ]paths precludes the seismic determination of deeper structure. Previously, the lack of observed moonquakes from the far side of the Moon has been used to infer the presence of a highly attenuating (possibly molten) core. Indirect geophysical measurements such as moment of inertia, magnetic induction, lunar laser ranging, and elemental abundances of mare basalts also place varying constraints on core size and state. In combination with seismic studies, these indirect measurements have been used to arrive at a commonly accepted model of the Moon's deepest interior that includes a solid inner and fluid outer core, overlain by a partial melt boundary layer. We recently applied modern array seismology techniques to the Apollo data and revealed detailed core structure, including the first direct confirmation of the presence of a solid inner core. Our study focused on the identification of core ]reflected phases in deep moonquake seismograms. The resulting model of the Moon fs innermost structure was found to be consistent with the commonly accepted model. However, the modeled layer radii may vary by tens of kilometers, as is expected when accounting for uncertainties such as moonquake location, timing errors, and potential seismic heterogeneities. In addition, the modeled velocities may vary with a 1-to-1 trade ]off with the modeled reflector depth. The GRAIL (Gravity Recovery and Interior Laboratory) mission, launched in Sept. 2011, placed two nearly identical spacecraft in lunar orbit. The two satellites make extremely high-resolution measurements of the lunar gravity field, which can be used to constrain the interior structure of the Moon using a "crust to core" approach. GRAIL fs constraints on crustal thickness, mantle structure, core radius and stratification, and core state (solid vs. molten) will complement seismic investigations in several ways. Here we present a progress report on our efforts to advance our knowledge of the Moon fs internal structure using joint gravity and seismic analyses. We will focus on methodology, including 1) refinements to the seismic core constraint accomplished through array processing of Apollo seismic data, made by applying a set of travel time corrections based on GRAIL structure estimates local to each Apollo seismic station; 2) modeling deep lunar structure through synthetic seismograms, to test whether the seismic core model can reproduce the core reflections observed in the Apollo seismograms; and 3) a joint seismic and gravity inversion in which we attempt to fit a family of seismic structure models with the gravity constraints from GRAIL, resulting in maps of seismic velocities and densities that vary from a nominal model both laterally and with depth.

Weber, Renee↗

Omnigenous umbilic stellarators

To better understand the dependence of the magnetic field structure in the plasma edge on the plasma boundary shape, in the context of X-point and island divertor designs, we define and develop a class of stellarators called umbilic stellarators. These equilibria are characterised by a single continuous high-curvature edge on the plasma boundary that goes around multiple times toroidally before meeting itself. We develop a technique that allows us to simultaneously optimise the plasma boundary along with a curve lying on the boundary on which we impose a high curvature while imposing omnigenity – a property of the magnetic field that ensures trapped particle confinement throughout the plasma volume. We find that umbilic stellarators naturally tend to favour piecewise omnigenity instead of omnigenity with a specific helicity. After generating omnigenous umbilic stellarators, we design coil sets for some of them and explore the fieldline structure in the edge and its sensitivity to small fluctuations in the plasma. Finally, using single-stage optimisation, we simultaneously modify the plasma and coil shape and propose an experiment to modify an existing tokamak to a finite-𝛽 stellarator using this technique and explore a potentially simpler way to convert a limited tokamak into a diverted stellarator.

fusion plasma↗

Lunar Seismology: the Internal Structure of the Moon

The direct P and S wave arrival times are the primary data set that can be measured on the seismograms of natural lunar seismic events. Polarization filtering techniques allow the enhancement of secondary body wave arrivals and record curves to identify the secondary phases and deduce structural information. Finally, shear wave amplitude vs. distance curves yield information on the location and magnitude of seismic velocity gradients in the interior. The results of these analyses show that the moon appears to have a two-layer crust at all four seismic stations: a 20 km upper crust that seems to be constant at all sites and a lower crust that is 40 km thick at stations 12 and 14 (mare), 55 + or - 10 km at station 16 (highland), and tentatively either 40 km or 70 km at station 15. The lower mantle extends from 480 km to at least 1100 km depth which is the maximum depth of penetration of all but a few seismic waves used as data. No definitive evidence for or against a lunar core exists.

Goins, N. R.↗

SBbadger: biochemical reaction networks with definable degree distributions

Abstract Motivation An essential step in developing computational tools for the inference, optimization and simulation of biochemical reaction networks is gauging tool performance against earlier efforts using an appropriate set of benchmarks. General strategies for the assembly of benchmark models include collection from the literature, creation via subnetwork extraction and de novo generation. However, with respect to biochemical reaction networks, these approaches and their associated tools are either poorly suited to generate models that reflect the wide range of properties found in natural biochemical networks or to do so in numbers that enable rigorous statistical analysis. Results In this work, we present SBbadger, a python-based software tool for the generation of synthetic biochemical reaction or metabolic networks with user-defined degree distributions, multiple available kinetic formalisms and a host of other definable properties. SBbadger thus enables the creation of benchmark model sets that reflect properties of biological systems and generate the kinetics and model structures typically targeted by computational analysis and inference software. Here, we detail the computational and algorithmic workflow of SBbadger, demonstrate its performance under various settings, provide sample outputs and compare it to currently available biochemical reaction network generation software. Availability and implementation SBbadger is implemented in Python and is freely available at https://github.com/sys-bio/SBbadger and via PyPI at https://pypi.org/project/SBbadger/. Documentation can be found at https://SBbadger.readthedocs.io. Supplementary information Supplementary data are available at Bioinformatics online.

59 BASIC BIOLOGICAL SCIENCES↗

Large-Scale Classification of Urban Structural Units From Remote Sensing Imagery

Remote sensing in combination with deep learning has become instrumental for efficiently and accurately classifying land-use and land-cover across large geographic areas. These technologies have also been successful in characterizing urban environments in terms of their structural units, structure types, or morphological regions. In these approaches, an urban area is partitioned into regions that exhibit homogeneous physical characteristics. However, existing approaches are typically limited to a single city, use inconsistent typologies, and lack scalability and generalization capacity. In this article, we propose an urban structural units categorization scheme and demonstrate its utility by applying it to 13 cities. Inspired by the lack of scalability and generalization capacity in urban structural units mapping, we extend the reach of deep learning and conduct a set of classification experiments in all 13 cities. These experiments offer insights into the strengths and limitations of deep neural networks for classifying urban structural units over diverse geographic regions and on heterogeneous collections of satellite imagery. The efficacy of the proposed deep learning approach is compared to a baseline method of multiscale image features and support vector machines. Our validation on five cities shows that better performance is achieved with deep neural networks. Additionally, we evaluate the impact of input size, model depth, and spatial pyramid pooling to assess the generalization capacity of deep neural networks.

47 OTHER INSTRUMENTATION↗

Level-Set Topology Optimization with Aeroelastic Constraints

Level-set topology optimization is used to design a wing considering skin buckling under static aeroelastic trim loading, as well as dynamic aeroelastic stability (flutter). The level-set function is defined over the entire 3D volume of a transport aircraft wing box. Therefore, the approach is not limited by any predefined structure and can explore novel configurations. The Sequential Linear Programming (SLP) level-set method is used to solve the constrained optimization problems. The proposed method is demonstrated using three problems with mass, linear buckling and flutter objective and/or constraints. A constraint aggregation method is used to handle multiple buckling constraints in the wing skins. A continuous flutter constraint formulation is used to handle difficulties arising from discontinuities in the design space caused by a switching of the critical flutter mode.

Dunning, Peter D.↗

The magnetic structure of long-wavelength magnetohydrodynamic modes in current-carrying stellarator plasmas

Magnetic field fluctuations are observed in current-carrying stellarator plasmas when the rotational transform is close to a rational value at the edge of the plasma. At low plasma pressure, these fluctuations are associated with perturbed currents parallel to the equilibrium magnetic field lines. A model for these magnetohydrodynamic modes in a low-β, three-dimensional stellarator equilibria has been developed. A set of helical current filaments are constrained to mimic the structure of magnetic field lines on rational surfaces derived from three-dimensional (3D) equilibrium reconstructions. Transformation to straight field line coordinates then allows fitting of the poloidal magnetic sensor data to a single harmonic function, which fixes the modeled toroidal mode structure via the field line flow geometry. The developed procedure accurately captures phase and amplitude variation for m/n = 3/2, 3/1, and 4/1 modes in the 3D equilibria of the compact toroidal hybrid experiment.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Reynolds-Averaged Navier-Stokes Simulations of Two Partial-Span Flap Wing Experiments

Structured Reynolds Averaged Navier-Stokes simulations of two partial-span flap wing experiments were performed. The high-lift aerodynamic and aeroacoustic wind-tunnel experiments were conducted at both the NASA Ames 7-by 10-Foot Wind Tunnel and at the NASA Langley Quiet Flow Facility. The purpose of these tests was to accurately document the acoustic and aerodynamic characteristics associated with the principle airframe noise sources, including flap side-edge noise. Specific measurements were taken that can be used to validate analytic and computational models of the noise sources and associated aerodynamic for configurations and conditions approximating flight for transport aircraft. The numerical results are used to both calibrate a widely used CFD code, CFL3D, and to obtain details of flap side-edge flow features not discernible from experimental observations. Both experimental set-ups were numerically modeled by using multiple block structured grids. Various turbulence models, grid block-interface interaction methods and grid topologies were implemented. Numerical results of both simulations are in excellent agreement with experimental measurements and flow visualization observations. The flow field in the flap-edge region was adequately resolved to discern some crucial information about the flow physics and to substantiate the merger of the two vortical structures. As a result of these investigations, airframe noise modelers have proposed various simplified models which use the results obtained from the steady-state computations as input.

Takalluk, M. A.↗