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At least 1,207 records · Page 67

The Sensitivity of Variational Bayesian Neural Network Performance to Hyperparameters

In scientific applications, predictive modeling is often of limited use without accurate uncertainty quantification (UQ) to indicate when a model may be extrapolating or when more data needs to be collected. Bayesian Neural Networks (BNNs) produce predictive uncertainty by propagating uncertainty in neural network (NN) weights and offer the promise of obtaining not only an accurate predictive model but also accurate UQ. However, in practice, obtaining accurate UQ with BNNs is difficult due in part to the approximations used for model training (such as those made in variational inference) and in part to the need to choose a suitable set of hyperparameters; these hyperparameters outnumber those needed for traditional NNs and often have opaque effects on the results. We aim to shed light on the effects of hyperparameter choices for variational BNNs by performing a global sensitivity analysis of variational BNN performance under varying hyperparameter settings. Our results indicate that many of the hyperparameters interact with each other to affect both predictive accuracy and UQ. For improved usage of variational BNNs in real-world applications, we suggest that thorough hyperparameter tuning, including tuning of prior hyperparameters and loss function parameters, is essential for accurate UQ in variational BNNs.

97 MATHEMATICS AND COMPUTING↗

Consensus theoretic classification methods

Consensus theory is adopted as a means of classifying geographic data from multiple sources. The foundations and usefulness of different consensus theoretic methods are discussed in conjunction with pattern recognition. Weight selections for different data sources are considered and modeling of non-Gaussian data is investigated. The application of consensus theory in pattern recognition is tested on two data sets: 1) multisource remote sensing and geographic data and 2) very-high-dimensional remote sensing data. The results obtained using consensus theoretic methods are found to compare favorably with those obtained using well-known pattern recognition methods. The consensus theoretic methods can be applied in cases where the Gaussian maximum likelihood method cannot. Also, the consensus theoretic methods are computationally less demanding than the Gaussian maximum likelihood method and provide a means for weighting data sources differently.

Benediktsson, Jon A.↗

Analysis and prediction of intersection traffic violations using automated enforcement system data

We report that the automated enforcement system (AES) is an effective way of supplementing traditional traffic enforcement, and the traffic violation data from AES can also be effectively used for safety research. In this study, traffic violation data were used to analyze the influencing factors associated with traffic violations and to predict the probability of violations at intersections. The potential factors influencing violations include 24 independent factors related to time, space, traffic and weather. Results from a logistic model showed that the midday period, weekends, residential districts, collector roads, congested traffic conditions, high traffic flow, lower wind speed and low temperature would increase the probability of traffic violations. The probability of violations was predicted by the random forest algorithm, which was proven to be the best traffic violation prediction model among logistic regression, Gaussian naive Bayes, and support vector machine. Moreover, the proximity weighted synthetic oversampling technique (ProWSyn) method was applied to reduce the impact of the imbalance ratio (IR) and improve the model’s prediction performance. The receiver operating characteristics (ROC) curves and Precision-Recall (PR) curves illustrated that the random forest algorithm using oversampling data had the best classifier prediction performance than undersampling data. The area under curve (AUC) and out-of-bag (OOB) error with IR = 1 reached 0.914 and 0.0787, which showed the better performance of the random forest algorithm using ProWSyn in dealing with imbalanced traffic violation data.

42 ENGINEERING↗

Fast radio bursts as probes of magnetic fields in the intergalactic medium

We examine the proposal that the dispersion measures (DMs) and Faraday rotation measures (RMs) of extragalactic linearly polarized fast radio bursts (FRBs) can be used to probe the intergalactic magnetic field (IGMF) in filaments of galaxies. The DM through the cosmic web is dominated by contributions from the warm-hot intergalactic medium (WHIM) in filaments and from the gas in voids. On the other hand, RM is induced mostly by the hot medium in galaxy clusters, and only a fraction of it is produced in the WHIM. We show that if one excludes FRBs whose sightlines pass through galaxy clusters, the line of sight (LOS) strength of the IGMF in filaments, B{sub ||}, is approximately C(〈1+z〉/f{sub DM})(RM/DM), where C is a known constant. Here, the redshift of the FRB is not required to be known; f {sub DM} is the fraction of total DM due to the WHIM, while 〈1+z〉 is the redshift of interevening gas weighted by the WHIM gas density, both of which can be evaluated for a given cosmology model solely from the DM of an FRB. Using data on structure formation simulations and a model IGMF, we show that C(〈1+z〉/f{sub DM})(RM/DM) closely reproduces the density-weighted LOS strength of the IGMF in filaments of the large-scale structure.

79 ASTRONOMY AND ASTROPHYSICS↗

Antenna Linear-Quadratic-Gaussian (LQG) Ccontrollers: Properties, Limits of Performance, and Tuning

The LQG controllers significantly improve antenna tracking precision, but their tuning is a trial-and-error process. A control engineer has two tools to tune an LQG controller: the choice of coordinate system of the controller, and the selection of weights of the LQG performance index. The paper selects the coordinates of the open-loop model that simplify the shaping of the closed-loop performance. and analyzes the impact of thc weights on the antenna closed-loop bandwidth, disturbance rejection properties, and antenna acceleration. Finally, it presents the LQG controller tuning procedure that rationally shapes the closed-loop performance.

control technology↗

Antenna LQG Controllers: Properties, Limits of Performance, and Tuning Procedure

The LQG controllers significantly improve antenna tracking precision, but their tuning is a trial-and-error process. A control engineer has two tools to tune an LQG controller: the choice of coordinate system of the controller, and the selection of weights of the LQG performance index. The paper selects the coordinates of the open-loop model that simplify the shaping of the closed-loop performance and analyzes the impact of the weights on the antenna closed-loop bandwidth, disturbance rejection properties, and antenna acceleration. Finally, it presents the LQG controller tuning procedure that rationally shapes the closed-loop performance.

antennas↗

Dynamic analysis of a circulating fluidized bed riser

A linear state model is proposed to analyze dynamic behavior of a circulating fluidized bed riser. Different operating regimes were attained with high density polyethylene beads at low and high system inventories. The riser was operated between the classical choking velocity and the upper transport velocity demarcating fast fluidized and transport regimes. At a given riser superficial gas velocity, the aerations fed at the standpipe were modulated resulting in a sinusoidal solids circulation rate that goes into the riser via L-valve. The state model was derived based on the mass balance equation in the riser. It treats the average solids fraction across the entire riser as a state variable. The total riser pressure drop was modeled using Newton’s second law of motion. The momentum balance equation involves contribution from the weight of solids and the wall friction caused by the solids to the riser pressure drop. The weight of solids utilizes the state variable and hence, the riser inventory could be easily calculated. The modeling problem boils down to estimating two parameters including solids friction coefficient and time constant of the riser. It has been shown that the wall friction force acts in the upward direction in fast fluidized regime which indicates that the solids were moving downwards on the average with respect to the riser wall. In transport regimes, the friction acts in the opposite direction. This behavior was quantified based on a sign of Fanning friction factor in the momentum balance equation. The time constant of the riser appears to be much higher in fast fluidized regime than in transport conditions.

42 ENGINEERING↗

Diffusive and quantum effects of water properties in different states of matter

The enthalpy, entropy, and free energy of water are important physical quantities for understanding many interesting phenomena in biological systems. However, conventional approaches require different treatments to incorporate quantum and diffusive effects of water in different states of matter. In this work, we demonstrate the use of the two-phase thermodynamic (2PT) model as a unified approach to obtain the properties of water over the whole phase region of water from short (∼20 ps) classical molecular dynamics trajectories. The 2PT model provides an effective way to separate the diffusive modes (gas-like component) from the harmonic vibrational modes (solid-like component) in the vibrational density of states (DoS). Therefore, both diffusive and quantum effect can be properly accounted for water by applying suitable statistical mechanical weighting functions to the DoS components. We applied the 2PT model to systematically examine the enthalpy, entropy, and their temperature dependence of five commonly used rigid water models. The 2PT results are found to be consistent with those obtained from more sophisticated calculations. While the thermodynamic properties determined from different water models are largely similar, the phase boundary determined from the equality of free energy is very sensitive to the small inaccuracy in the values of enthalpy and absolute entropy. The enthalpy, entropy, and diffusivity of water are strongly interrelated, which challenge further improvement of rigid water model via parameter fitting. Our results show that the 2PT is an efficient method for studying the properties of water under various chemical and biological environments.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Integrating deep neural networks with full-waveform inversion: Reparameterization, regularization, and uncertainty quantification

Full-waveform inversion (FWI) is an accurate imaging approach for modeling the velocity structure by minimizing the misfit between recorded and predicted seismic waveforms. However, the strong nonlinearity of FWI resulting from fitting oscillatory waveforms can trap the optimization in local minima. We have adopted a neural-network-based full-waveform inversion (NNFWI) method that integrates deep neural networks with FWI by representing the velocity model with a generative neural network. Neural networks can naturally introduce spatial correlations as regularization to the generated velocity model, which suppresses noise in the gradients and mitigates local minima. Furthermore, the velocity model generated by neural networks is input to the same partial differential equation (PDE) solvers used in conventional FWI. The gradients of the neural networks and PDEs are calculated using automatic differentiation, which back propagates gradients through the acoustic PDEs and neural network layers to update the weights of the generative neural network. Experiments on 1D velocity models, the Marmousi model, and the 2004 BP model determine that NNFWI can mitigate local minima, especially for imaging high-contrast features such as salt bodies, and it significantly improves the inversion in the presence of noise. Adding dropout layers to the neural network model also allows analyzing the uncertainty of the inversion results through Monte Carlo dropout. NNFWI opens a new pathway to combine deep learning and FWI for exploiting the characteristics of deep neural networks and the high accuracy of PDE solvers. Because NNFWI does not require extra training data and optimization loops, it provides an attractive and straightforward alternative to conventional FWI.

58 GEOSCIENCES↗

The effects of molecular weight on the single lap shear creep and constant strain rate behavior of thermoplastic polyimidesulfone adhesive

The bonded shear creep and constant strain rate behaviors of zero, one, and three percent endcapped thermoplastic polyimidesulfone adhesive were examined at room and elevated temperatures. Endcapping was accomplished by the addition of phthalic anhydrides. The primary objective was to determine the effects of molecular weight on the mechanical properties of the adhesive. Viscoelastic and nonlinear elastic constitutive equations were utilized to model the adhesive. Ludwik's and Crochet's relations were used to describe the experimental failure data. The effects of molecular weight changes on the above mentioned mechanical behavior were assessed. The viscoelastic Chase-Goldsmith and elastic nonlinear relations gave a good fit to the experimental stress strain behavior. Crochet's relations based on Maxwell and Chase-Goldsmith models were fit to delayed failure data. Ludwik's equations revealed negligible rate dependence. Ultimate stress levels and the safe levels for creep stresses were found to decrease as molecular weight was reduced.

Dembosky, Stanley K.↗

Discriminating between adaptive and carcinogenic liver hypertrophy in rat studies using logistic ridge regression analysis of toxicogenomic data: The mode of action and predictive models

Chemical exposure often results in liver hypertrophy in animal tests, characterized by increased liver weight, hepatocellular hypertrophy, and/or cell proliferation. While most of these changes are considered adaptive responses, there is concern that they may be associated with carcinogenesis. In this study, we have employed a toxicogenomic approach using a logistic ridge regression model to identify genes responsible for liver hypertrophy and hypertrophic hepatocarcinogenesis and to develop a predictive model for assessing hypertrophy-inducing compounds. Logistic regression models have previously been used in the quantification of epidemiological risk factors. DNA microarray data from the Toxicogenomics Project-Genomics Assisted Toxicity Evaluation System were used to identify hypertrophy-related genes that are expressed differently in hypertrophy induced by carcinogens and non-carcinogens. Data were collected for 134 chemicals (72 non-hypertrophy-inducing chemicals, 27 hypertrophy-inducing non-carcinogenic chemicals, and 15 hypertrophy-inducing carcinogenic compounds). After applying logistic ridge regression analysis, 35 genes for liver hypertrophy (e.g., Acot1 and Abcc3) and 13 genes for hypertrophic hepatocarcinogenesis (e.g., Asns and Gpx2) were selected. The predictive models built using these genes were 94.8% and 82.7% accurate, respectively. Pathway analysis of the genes indicates that, aside from a xenobiotic metabolism-related pathway as an adaptive response for liver hypertrophy, amino acid biosynthesis and oxidative responses appear to be involved in hypertrophic hepatocarcinogenesis. Early detection and toxicogenomic characterization of liver hypertrophy using our models may be useful for predicting carcinogenesis. In addition, the identified genes provide novel insight into discrimination between adverse hypertrophy associated with carcinogenesis and adaptive hypertrophy in risk assessment. - Highlights: • Hypertrophy (H) and hypertrophic carcinogenesis (C) were studied by toxicogenomics. • Important genes for H and C were selected by logistic ridge regression analysis. • Amino acid biosynthesis and oxidative responses may be involved in C. • Predictive models for H and C provided 94.8% and 82.7% accuracy, respectively. • The identified genes could be useful for assessment of liver hypertrophy.

60 APPLIED LIFE SCIENCES↗

Choosing Transport Events for Initiating Splitting and Rouletting

A study was performed to determine which transport events should be used to initiate a weight window lookup to achieve the best variance reduction performance. A weight window lookup potentially triggers particle splitting (in important regions of phase space) or rouletting (in unimportant regions), thereby optimizing computational effort. Potential initiating transport events include collisions (both pre- and post-collision), geometry surface crossings, traversing a mean-free path, and streaming across a weight window boundary. Permutations of these initiating events were tested on an urban model with background radiation sources and a spent fuel cask with a neutron dose mesh tally. Generally, all methods perform better with finer weight window meshes. Tracking on weight windows performs well for coarse weight window meshes, while a combination of splitting each mean-free path, geometric surface crossing, and before collisions performs well for fine weight window meshes.

42 ENGINEERING↗

Thermodynamics of Restricted Boltzmann Machines and Related Learning Dynamics

We investigate the thermodynamic properties of a restricted Boltzmann machine (RBM), a simple energy-based generative model used in the context of unsupervised learning. Assuming the information content of this model to be mainly reflected by the spectral properties of its weight matrix W, we try to make a realistic analysis by averaging over an appropriate statistical ensemble of RBMs. First, a phase diagram is derived. Otherwise similar to that of the Sherrington–Kirkpatrick (SK) model with ferromagnetic couplings, the RBM’s phase diagram presents a ferromagnetic phase which may or may not be of compositional type depending on the kurtosis of the distribution of the components of the singular vectors of W. Subsequently, the learning dynamics of the RBM is studied in the thermodynamic limit. A “typical” learning trajectory is shown to solve an effective dynamical equation, based on the aforementioned ensemble average and explicitly involving order parameters obtained from the thermodynamic analysis. In particular, this let us show how the evolution of the dominant singular values of W, and thus of the unstable modes, is driven by the input data. At the beginning of the training, in which the RBM is found to operate in the linear regime, the unstable modes reflect the dominant covariance modes of the data. In the non-linear regime, instead, the selected modes interact and eventually impose a matching of the order parameters to their empirical counterparts estimated from the data. Finally, we illustrate our considerations by performing experiments on both artificial and real data, showing in particular how the RBM operates in the ferromagnetic compositional phase.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Calculation of neutron flux spectra of the VVER-1000 mock-up shielding benchmark with Monte Carlo code MCS utilizing mesh-based weight window

The measurements of neutron spectra compiled inside the NEA-1517/82 package from the Shielding Integral Benchmark Archive and Database (SINBAD) are chosen as benchmark cases to validate the variance reduction technique based on weight window in Monte Carlo Code MCS. A full 3D model for fixed source mode calculation with hexagonal lattice source definition is developed to simulate total of 6 points of measurements at the vicinity of the reactor and the reactor pressure vessel region. A code/code comparison against MCNP6 code is first conducted as verification element for the mesh-based weight window capability in MCS. Finally, the validation results are presented against measurements. The verification against MCNP6 code gives good agreement in addition of the insight to the importance of user understanding to determine proper reference point and reference lower weight bound for scaling which is not required in MCS code due to its capability of automatic scaling. The comparison of neutron spectra between MCS and measurements shows good agreement within 3 standard deviations for all of six detector positions.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Practical Considerations using Weighted-Acceleration Compensation Techniques for Dynamic Force Measurements in Wind Tunnels

Most wind tunnel force measurement systems are designed and calibrated for high-accuracy static measurements, but may have limited ability to sense dynamic forces and moments. As a means to improve the measurement bandwidth of dynamic forces, researchers have proposed using a weighted-acceleration technique, which uses accelerometer data to compensate and correct for system dynamics. The sum of weighted-accelerations method is attractive as the acceleration data applies a correction to the traditional static measurements. The focus of this paper is on practical aspects of implementing a weighted-acceleration technique in an experimental arrangement. A formulation of the weighted-acceleration methodology is validated on a reduced-order model and demonstrated on a tabletop experiment that serves as a proxy to a wind tunnel force measurement system. As part of this system, a two component normal force and pitching moment balance was designed and fabricated. A static and dynamic calibration of the system was performed, and the weighted-acceleration technique was used to reconstruct impact forces acting on the system. Practical considerations of the experimental design that improve the success of the methodology are discussed.

Dynamic force measurement↗

Practical Considerations using Weighted-Acceleration Compensation Techniques for Dynamic Force Measurements in Wind Tunnels

Most wind tunnel force measurement systems are designed and calibrated for high-accuracy static measurements, but may have limited ability to sense dynamic forces and moments. As a means to improve the measurement bandwidth of dynamic forces, researchers have proposed using a weighted-acceleration technique, which uses accelerometer data to compensate and correct for system dynamics. The sum of weighted-accelerations method is attractive as the acceleration data applies a correction to the traditional static measurements. The focus of this paper is on practical aspects of implementing a weighted-acceleration technique in an experimental arrangement. A formulation of the weighted-acceleration methodology is validated on a reduced-order model and demonstrated on a tabletop experiment that serves as a proxy to a wind tunnel force measurement system. As part of this system, a two component normal force and pitching moment balance was designed and fabricated. A static and dynamic calibration of the system was performed, and the weighted-acceleration technique was used to reconstruct impact forces acting on the system. Practical considerations of the experimental design that improve the success of the methodology are discussed.

Dynamic force measurement↗

SU-D-207A-01: Female Pelvic Synthetic CT Generation Based On Joint Shape and Intensity Analysis

Purpose: To develop a method for generating female pelvic synthetic CT (MRCT) images from a single MR scan and evaluate its utility in radiotherapy. Methods: Under IRB-approval, an imaging sequence (T1-VIBE-Dixon) was acquired for 10 patients. This sequence yields 3 useful image volumes of different contrast (“in-phase” T1-weighted, fat and water). A previously published pelvic bone shape model was used to generate a rough bone mask for each patient. A modified fuzzy c-means classification was performed on the multi spectral MR data, with a regularization term that utilizes the prior knowledge provided by the bone mask and addresses the intensity overlap between different tissue types. A weighted sum of classification probabilities with attenuation values yielded MRCT volumes. The mean absolute error (MAE) between MRCT and real CT on various regions was calculated following deformable alignment (Velocity). Intensity modulated Treatment plans based on actual CT and MRCT were made and compared. Results: The average/standard deviation of MAE across 10 patients was 10.1/6.7 HU for muscle, 6.7/4.6 HU for fat, 136.9/53.5 HU for bony tissues under 850 HU (97% of total bone volume), 188.9/119.3 HU for bony tissues above 850 HU and 17.3/13.3 HU for intrapelvic soft tissues. Calculated doses were comparable for plans generated on CT and calculated using MRCT densities or vice versa, with differences in PTV D99% (mean/σ) of (–0.1/0.2 Gy) and (0.3/0.2 Gy), PTV D0.5cc of (–0.3/0.2 Gy) and (–0.4/1.7 Gy). OAR differences were similarly small for comparable structures, with differences in bowel V50Gy of (–0.3/0.2%) and (0.0/0.2%), femur V30Gy of (0.7/1.2%) and (0.2/1.2%), sacrum V20GY of (0.0/0.1%) and (–0.1/1.1%) and mean pelvic V20Gy of (0.0/0.1%) and (0.6/1.8%). Conclusion: MRCT based on a single imaging sequence in the female pelvis is feasible, with acceptably small variations in attenuation estimates and calculated doses to target and critical organs. Work supported by NIHR01EB016079.

60 APPLIED LIFE SCIENCES↗

TH-CD-207A-05: Lung Surface Deformation Vector Fields Prediction by Monitoring Respiratory Surrogate Signals

Purpose: In this study, we developed and evaluated a method for predicting lung surface deformation vector fields (SDVFs) based on surrogate signals such as chest and abdomen motion at selected locations and spirometry measurements. Methods: A Patient-specific 3D triangular surface mesh of the lung region at end-expiration (EE) phase was obtained by threshold-based segmentation method. For each patient, a spirometer recorded the flow volume changes of the lungs; and 192 selected points at a regular spacing of 2cm X 2cm matrix points over a total area of 34cm X 24cm on the surface of chest and abdomen was used to detect chest wall motions. Preprocessing techniques such as QR factorization with column pivoting (QRCP) were employed to remove redundant observations of the chest and abdominal area. To create a statistical model between the lung surface and the corresponding surrogate signals, we developed a predictive model based on canonical ridge regression (CRR). Two unique weighting vectors were selected for each vertex on the surface of the lung, and they were optimized during the training process using the all other phases of 4D-CT except the end-inspiration (EI) phase. These parameters were employed to predict the vertices locations of a testing data set, which was the EI phase of 4D-CT. Results: For ten lung cancer patients, the deformation vector field of each vertex of lung surface mesh was estimated from the external motion at selected positions on the chest wall surface plus spirometry measurements. The average estimation of 98th percentile of error was less than 1 mm (AP= 0.85, RL= 0.61, and SI= 0.82). Conclusion: The developed predictive model provides a non-invasive approach to derive lung boundary condition. Together with personalized biomechanical respiration modelling, the proposed model can be used to derive the lung tumor motion during radiation therapy accurately from non-invasive measurements.

60 APPLIED LIFE SCIENCES↗