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NASA NTRS2002

The Use of Remote Sensing for Monitoring, Prediction, and Management of Hydrologic, Agricultural, and Ecological Processes in the Northern Great Plains

The NASA-EPSCoR program in South Dakota is focused on the enhancement of NASA-related research in earth system science and corresponding infrastructure development to support this theme. Hence, the program has adopted a strategy that keys on research projects that: a) establish quantitative links between geospatial information technologies and fundamental climatic and ecosystem processes in the Northern Great Plains (NGP) and b) develop and use coupled modeling tools, which can be initialized by data from combined satellite and surface measurements, to provide reliable predictions and management guidance for hydrologic, agricultural, and ecological systems of the NGP. Building a partnership network that includes both internal and external team members is recognized as an essential element of the SD NASA-EPSCoR program. Hence, promoting and tracking such linkages along with their relevant programmatic consequences are used as one metric to assess the program's progress and success. This annual report first summarizes general activities and accomplishments, and then provides progress narratives for the two separate, yet related research projects that are essential components of the SD NASA-EPSCoR program.

Farwell, Sherry O.↗
NASA NTRS2002

Continuing Development of a Collaborative Plan to Further Engage South Dakota in NASA's Earth Science Enterprise

An ongoing set of research planning activities have occurred in South Dakota as a consequence of the past two years of NASA-EPSCoR Preparation Grants. During this time a group of approximately 60 scientists, engineers, and university administrators in South Dakota have been directly involved as "theme team" members in a series of five all-day meetings to identify the research and technological priorities that are consistent both with NASA-ESE's interests and the State's expertise. Institutions represented within the group's membership include: South Dakota School of Mines & Technology, South Dakota State University, Augustana College, University of South Dakota, USGS EROS Data Center, Si ranks College, Santa Gleska University, Sisseton Wahpeton Community College, USGS Water Resources Division, US National Weather Service, and the SD Department of Environment & Natural Resources. Many of these organizations are also members and affiliates of the SD Space Grant Consortium. The evolving plan has been guided by the following desirable actions: 1. To establish new contacts and strengthen existing linkages with NASA Centers, relevant NASA researchers, and key personnel at the USGS EROS Data Center. 2. To promote participation from the State's major research institutions, State agencies, and relevant businesses in South Dakota that are interested in strengthening our scientific and technological enterprises. 3. To develop the State's scientific talent and infrastructure for enhanced competitiveness in research, development, and technology-based economic development. 4. To encourage greater participation by under represented groups, especially Native Americans, in scientific education and research. 5. To build greater public and political support in South Dakota for the overall science, engineering, and technology enterprise. 6. To communicate the benefits of current and future NASA programs to the progress and development of South Dakota, the Northern Great Plains Region, and the Nation.

Farwell, Sherry O.↗
NASA NTRS2002

Satellites as Sentinels for Environment & Health

Satellites as Sentinels for Environment & Health Remotely-sensed data and observations are providing powerful new tools for addressing human and ecosystem health by enabling improved understanding of the relationships and linkages between health-related environmental parameters and society as well as techniques for early warning of potential health problems. NASA Office of Earth Science Applications Program has established a new initiative to utilize its data, expertise, and observations of the Earth for public health applications. In this initiative, lead by Goddard Space Flight Center, remote sensing, geographic information systems, improved computational capabilities, and interdisciplinary research between the Earth and health science communities are being combined in rich collaborative efforts resulting in more rapid problem-solving, early warning, and prevention in global health issues. This presentation provides a number of recent examples of applications of advanced remote sensing and other technologies to health.and security issues related to the following: infectious and vector-borne diseases; urban, regional and global air pollution; African and Asian airborne dust; heat stress; UV radiation; water-borne disease; extreme weather; contaminant pathways (ocean, atmosphere, ice)

Maynard, Nancy G.↗
NASA NTRS2003

Two Strategies for Microbial Production of an Industrial Enzyme-Alpha-Amylase

Extremophiles are microorganisms that thrive in, from an anthropocentric view, extreme environments including hot springs, soda lakes and arctic water. This ability of survival at extreme conditions has rendered extremophiles to be of interest in astrobiology, evolutionary biology as well as in industrial applications. Of particular interest to the biotechnology industry are the biological catalysts of the extremophiles, the extremozymes, whose unique stabilities at extreme conditions make them potential sources of novel enzymes in industrial applications. There are two major approaches to microbial enzyme production. This entails enzyme isolation directly from the natural host or creating a recombinant expression system whereby the targeted enzyme can be overexpressed in a mesophilic host. We are employing both methods in the effort to produce alpha-amylases from a hyperthermophilic archaeon (Thermococcus) isolated from a hydrothermal vent in the Atlantic Ocean, as well as from alkaliphilic bacteria (Bacillus) isolated from a soda lake in Tanzania. Alpha-amylases catalyze the hydrolysis of internal alpha-1,4-glycosidic linkages in starch to produce smaller sugars. Thermostable alpha-amylases are used in the liquefaction of starch for production of fructose and glucose syrups, whereas alpha-amylases stable at high pH have potential as detergent additives. The alpha-amylase encoding gene from Thermococcus was PCR amplified using carefully designed primers and analyzed using bioinformatics tools such as BLAST and Multiple Sequence Alignment for cloning and expression in E.coli. Four strains of Bacillus were grown in alkaline starch-enriched medium of which the culture supernatant was used as enzyme source. Amylolytic activity was detected using the starch-iodine method.

Bernhardsdotter, Eva C. M. J.↗
NASA NTRS2003

Developing Novel Fluorescent Materials with Near Infrared Emission by Using m-Phenylene

Our research focuses on development of novel p-conjugated polymers with desired emission. In the current study, the structure of a highly green-emitting poly[(m-phenylenevinylene)- alt-( p-phenylenevinylene)] has been modified by increasing the content of p-phenylene to achieve red- and infrared-emission. The polymer is synthesized via Wittig-Horner condensation, which is known to lead to trans-olefin linkage. The polymer is soluble in common organic solvents such as toluene, chloroform and THF. The spectroscopic properties of the polymer in both solution and film states will be discussed in comparison with its model compound.

Pang, Yi↗
NASA NTRS2003

Catalytic Activity of a Binary Informational Macromolecule

RNA molecules are thought to have played a prominent role in the early history of life on Earth based on their ability both to encode genetic information and to exhibit catalytic function. The modern genetic alphabet relies on two sets of complementary base pairs to store genetic information. However, due to the chemical instability of cytosine, which readily deaminates to uracil, a primitive genetic system composed of the bases A, U, G and C may have been difficult to establish. It has been suggested that the first genetic material instead contained only a single base-pairing unie'. Here we show that binary informational macromolecules, containing only two different nucleotide subunits, can act as catalysts. In vitro evolution was used to obtain ligase ribozymes composed of only 2,6-diaminopurine and uracil nucleotides, which catalyze the template-directed joining of two RNA molecules, one bearing a 5'-triphosphate and the other a 3'-hydroxyl. The active conformation of the fastest isolated ribozyme had a catalytic rate that was about 36,000-fold faster than the uncatalyzed rate of reaction. This ribozyme is specific for the formation of biologically relevant 3',5'-phosphodiester linkages.

Reader, John S.↗
NASA NTRS2003

Interstellar Deuterium Chemistry

The presence of isotopic anomalies is the most unequivocal demonstration that meteoritic material contains circumstellar or interstellar components. In the case of organic compounds in meteorites and interplanetary dust particles (IDPs), the most useful isotopic tracer of interstellar components has been deuterium (D) excesses. In some cases these enrichments are seen in bulk meteoritic materials, but D enrichments have also been observed in meteoritic subfractions and even within specific classes of molecular species, such as amino and carboxylic acids. These anomalies are not thought to be the result of nucleosynthetic processes, but are instead ascribed to chemical and physical processes occurring in the interstellar medium (ISM). The traditional explanation of these D excesses has been to invoke the presence of materials made in the ISM by low temperature gas phase ion-molecule reactions. Indeed, the DM ratios seen in the simple interstellar gas phase molecules in cold dense clouds amenable to measurement using radio spectral techniques are generally considerably higher than the values seen in enriched Solar System materials. However, the true linkage between the DM ratios in interstellar and meteoritic materials is obscured by several effects. First, current observations of D enrichment in the ISM have been made of only a few simple molecules, molecules that are not the main carriers of D in Solar System materials. Second, some of the interstellar D enrichment is likely to reside on labile moieties that will have exchanged to some degree with more isotopically normal material during incorporation into the warm protosolar nebula, parent body processing, delivery, recovery, and analysis. Third, ion-molecule reactions represent only one of at least four processes that can produce strong D-H fractionation in the ISM.

Sandford, S. A.↗
NASA NTRS2003

Intercontinental Transport of Ozone from Tropical Biomass Burning

Researchers have been looking at the connection between tropical biomass burning and ozone formation and long-range transport for roughly 15 years. One can see the linkage and transport patterns from satellite though aircraft and/or balloon-sonde profiles are required to observe the fine structure (ozone transport over thousands of km often happens in thin layers). In this review, I survey the pyrogenic ozone transport in the large oceanic basins - Indian Ocean, Pacific and Atlantic. Mechanistic complexities are discussed and examples shown from satellite, aircraft and soundings, including NASA results from TOMS, the GTE experiments and the SHADOZ sounding program. Experiments referred to include SAFARI-92, TRACE-A, INDOEX, PEM-Tropics and TRACE-P. augmented by subsidence, a variable tropopause height, and lightning - even ozone pollution from the Indian Ocean has been implicated. Over the Indian Ocean, pollution interacts with convection and the monsoon cycle.

Thompson, A. M.↗
NASA NTRS2003

NAME Modeling and Data Assimilation: A Strategic Overview

In this presentation a strategic overview of modeling and related data analysis and assimilation components of the North American Monsoon Experiment (NAME) are given. Building on the NAME science plan, a strategy is outlined for accelerating progress on the fundamental modeling issues pertaining to NAME science goals. The strategy takes advantage of NAME enhanced observations, and should simultaneously provide model-based guidance to the evolving multi-tiered NAME observing program. The NAME modeling strategy recognizes three distinct, but related, roles that observations play in model development and assessment. These are: (1) to guide model development by providing constraints on model simulations at the process level (e.g. convection, land/atmosphere and ocean/atmosphere interactions); (2) to help assess the veracity of model simulations of the various key NAMS phenomena (e.g. low level jets, land sea breezes, tropical storms), and the linkages to regional and larger-scale climate variability; and (3) to provide initial and boundary conditions, and verification data for model predictions.

Schubert, Siegfried↗
NASA NTRS2004

Modeling and Observational Study of the Global Atmospheric Impacts of Antarctic Sea Ice Anomalies

A combined observational and modeling study considers the linkage between Antarctic sea ice and the climate of non-local latitudes. The observational component is based upon analyses of monthly station observations and the National Centers for Environmental Prediction (NCEP)/National Center for Atmospheric Research (NCAR) Reanalysis (NNR). The modeling component consists of simulations of the NCAR Community Climate Model versions 2 (CCM2) and 3 (CCM3) and the recent Community Atmosphere Model (CAM2). A convenient mechanism for communication between the Antarctic region (particularly the Ross Sea area) and the tropics and Northern Hemisphere is examined. The first evidence of this teleconnection came from CCM2 simulations performed during an earlier NASA supported project. Annual-cycle simulations with and without Antarctic sea ice show statistically- significant responses in monsoon precipitation over central and northern China during the month of September. The changes in monsoon precipitation are physically consistent with an intensified southwest Pacific (Northern Hemisphere) subtropical high in response to all Antarctic sea ice being removed and replaced with open water at -1.9"C. The intensified high is the northernmost component of three primary anomalies. The southernmost anomaly includes the Ross Sea area, where sea ice has been removed. An earlier study by Peng and Domros had also found a link between Antarctic sea ice and the East Asian monsoon circulation. The current project has helped to understand the teleconnection.

Bromwich, David H.↗
NASA NTRS2004

Magnetic Circuit Model of PM Motor-Generator to Predict Radial Forces

A magnetic circuit model is developed for a PM motor for flywheel applications. A sample motor is designed and modeled. Motor configuration and selection of materials is discussed, and the choice of winding configuration is described. A magnetic circuit model is described, which includes the stator back iron, rotor yoke, permanent magnets, air gaps and the stator teeth. Iterative solution of this model yields flux linkages, back EMF, torque, power, and radial force at the rotor caused by eccentricity. Calculated radial forces are then used to determine motor negative stiffness.

McLallin, Kerry↗
NASA NTRS2004

Relief Evolution in Tectonically Active Mountain Ranges

The overall aims of this 3-yr project, as originally proposed were to: (1) investigate quantitatively the roles of fluvial and glacial erosion in the evolution of relief in mountainous regions, and (2) test rigorously the quality and accuracy of SRTM topographic data in areas of rugged relief - both the most challenging and of greatest interest to geomorphic, neotectonic, and hazards applications. Natural laboratories in both the western US and the Southern Alps of New Zealand were identified as most promising. The project has been both successful and productive, despite the fact that no SRTM data for our primary field sites in New Zealand were released on the time frame of the work effort. Given the delayed release of SRTM data, we pursued the scientific questions of the roles of fluvial and, especially, glacial erosion in the evolution of relief in mountainous regions using available digital elevation models (DEMs) for the Southern Alps of New Zealand (available at both 25m and 50m pixel sizes), and USGS 10m and 30m DEMs within the Western US. As emphasized in the original proposal, we chose the emphasis on the role of glacial modification of topographic relief because there has been little quantitative investigation of glacial erosion processes at landscape scale. This is particularly surprising considering the dramatic sculpting of most mid- and high-latitude mountain ranges, the prodigious quantities of glacially-derived sediment in terrestrial and marine basins, and the current cross-disciplinary interest in the role of denudational processes in orogenesis and the evolution of topography in general. Moreover, the evolution of glaciated landscapes is not only a fundamental problem in geomorphology in its own right, but also is at the heart of the debate over Late Cenozoic linkages between climate and tectonics.

Whipple, Kelin X.↗
NASA NTRS2004

Human-Induced Climate Variations Linked to Urbanization: From Observations to Modeling

The goal of this session is to bring together scientists from interdisciplinary backgrounds to discuss the data, scientific approaches and recent results focusing on the impact of urbanization on the climate. The discussion will highlight current observational and modeling capabilities being employed for investigating the urban environment and its linkage to the change in the Earth's climate system. The goal of the session is to identify our current stand and the future direction on the topic. Urbanization is one of the extreme cases of land use change. Most of population of the world has moved to urban areas. By 1995, more than 70% of population of North America and Europe were living in cities. By 2025, the United Nations estimates that 60% of the worlds population will live in cities. Although currently only 1.2% of the land is urban, better understanding of how the atmosphere-ocean-land-biosphere components interact as a coupled system and the influence of human activities on this system is critical. Our understanding of urbanization effect is incomplete, partly because human activities induce new changes on climate in addition to the original natural variations, and partly because previously few data available for study urban effect globally. Urban construction changes surface roughness, albedo, heat capacity and vegetation coverage. Traffic and industry increase atmospheric aerosol. It is suggested that urbanization may modify rainfall processes through aerosol-cloud interactions or dynamic feedbacks. Because urbanization effect on climate is determined by many factors including land cover, the city's microscale features, population density, and human lifestyle patterns, it is necessary to study urban areas over globe.

Shepherd, J. Marshall↗
NASA NTRS2004

Did the Pre-RNA World Rest Upon DNA Molecules?

The isolation of a DNA sequence that catalyzes the ligation of oligodeoxynucleotides via the formation of 3' - 5' phosphodiester linkage significance in selection experiments has been reported. Ball recently used this to discuss the possibility that natural DNA molecules may have formed in the primitive Earth leading to the origin of life. As noted by Ferris and Usher, if metabolic pathways evolved backwards, it could be argued that the biosynthesis of 2-deoxyribose from ribose suggests that RNA came from DNA. As summarized elsewhere, there are several properties of deoxyribose which could be interpreted to support the possibility that DNA-like molecules arose prior to the RNA world. For example, 2-deoxyribose is slightly more soluble than ribose (which may have been an advantage in a drying pool scenario), may have been more reactive under possible prebiotic conditions (it forms a nucleoside approx. 150 times faster than ribose with the alternative base urazole at 25 C), while it decomposes in solution (approximately 2.6 times more slowly than ribose at 100 C). Other advantages of DNA over RNA are that it has one fewer chiral center, has a greater stability at the 8.2 pH value of the current oceans, and does not has the 2'5' and 3'5' ambiguity in polymerizations. Yet, there is strong molecular biological and biochemical evidence that RNA was featured in the biology well before the last common ancestor. The presence of sugar acids, including both ribo- and deoxysugar acids, in the 4.6 Ga old Murchison meteorite suggest that both may have been available in the primitive Earth, derived from the accretion of extraterrestrial sources and/or from endogenous processes involving formaldehyde and its derivatives. However, the abiotic synthesis of deoxyribose, ribose, and other sugars from glyceraldehyde and acetaldehyde under alkaline conditions is inefficient and unespecific. Although sugars are labile compounds, the role of cyanamide or borate minerals in the stabilization of the cyclic forms of ribose and other pentoses has recently been demonstrated. Nonetheless, the assumption either RNA or DNA was the first genetic material needs to be supplemented by laboratory models demonstrating that the prebiotic synthesis of activated beta-D-(deoxy)ribonucleotides and their polymers was feasible. As of today such evidence is lacking, and there is no convincing synthesis of any nucleotide, since all model experiments produce complex mixtures of products in which there is no preferential synthesis of chiral D-nucleotides. This strongly suggests that both DNA and RNA may have been preceded by pairing structures much simpler than extant nucleic acids. It is doubtful that DNA molecules, or indeed other (de0xy)ribofuranoid oligonucleotides formed the basis of these as yet undescribed pre-RNA worlds.

Lazcano, Antonio↗
NASA NTRS2004

Metadata Authoring with Versatility and Extensibility

NASA's Global Change Master Directory (GCMD) assists the scientific community in the discovery of and linkage to Earth science data sets and related services. The GCMD holds over 13,800 data set descriptions in Directory Interchange Format (DIF) and 700 data service descriptions in Service Entry Resource Format (SERF), encompassing the disciplines of geology, hydrology, oceanography, meteorology, and ecology. Data descriptions also contain geographic coverage information and direct links to the data, thus allowing researchers to discover data pertaining to a geographic location of interest, then quickly acquire those data. The GCMD strives to be the preferred data locator for world-wide directory-level metadata. In this vein, scientists and data providers must have access to intuitive and efficient metadata authoring tools. Existing GCMD tools are attracting widespread usage; however, a need for tools that are portable, customizable and versatile still exists. With tool usage directly influencing metadata population, it has become apparent that new tools are needed to fill these voids. As a result, the GCMD has released a new authoring tool allowing for both web-based and stand-alone authoring of descriptions. Furthermore, this tool incorporates the ability to plug-and-play the metadata format of choice, offering users options of DIF, SERF, FGDC, ISO or any other defined standard. Allowing data holders to work with their preferred format, as well as an option of a stand-alone application or web-based environment, docBUlLDER will assist the scientific community in efficiently creating quality data and services metadata.

Pollack, Janine↗
NASA NTRS2004

The North Pacific as a Regulator of Summertime Climate Over North America and the Asian Monsoon

The interannual variability of summertime rainfall over the U.S. may be linked to climate anomalies over Pacific and East Asia through teleconnection patterns that may be components of recurring global climate modes in boreal summer (Lau and Weng 2002). In this study, maintenance of the boreal summer teleconnection patterns is investigated. The particular focus is on the potential effects of North Pacific air-sea interaction on climate anomalies over the U.S. Observational data, reanalysis and outputs of a series of NASA NSIPP AGCM and AGCM coupled to NASA GSFC MLO model experiments are used. Statistical analysis of observations and NSIPP AMIP type simulations indicates that, the interannual variability of observed warm season precipitation over the U.S. is related to SST variation in both tropical and North Pacific, whereas the NSIPP AMIP simulated summertime US. precipitation variation mainly reflects impact of ENS0 in tropical Pacific. This implies the potential importance of air-sea interaction in North Pacific in contributing to the interannual variability of observed summer climate over the U.S. The anomalous atmospheric circulation associated with the dominant summertime teleconnection modes in both observations and NSIPP AMIP simulations are further diagnosed, using stationary wave modeling approach. In observations, for the two dominant modes, both anomalous diabatic heating and anomalous transients significantly contribute to the anomalous circulation. The distributions of the anomalous diabatic heating and transient forcing are quadrature configured over North Pacific and North America, so that both forcings act constructively to maintain the teleconnection patterns. The contrast between observations and NSIPP AMIP simulations from stationary wave modeling diagnosis confirms the previous conclusion based on statistical analysis. To better appreciate the role of extra-tropical air-sea interaction in maintaining the summertime teleconnection pattern, various dynamical and physical fields and their inter- linkage in the series of NSIPP AGCM and AGCM coupled to MLO model experiments are examined in-depth. Based on comparison between different model experiments, we will discuss the physical and dynamical mechanisms through which the air-sea interaction in extratropics, and transient mean flow interactions over the North Pacific, affects interannual variation of U.S. climate during boreal summer.

Lau, William K. M.↗
NASA NTRS2004

The use of NASA GEOS Global Analysis in MM5/WRF Initialization: Current Studies and Future Applications

An effort has been made at NASA/GSFC to use the Goddard Earth Observing system (GEOS) global analysis in generating the initial and boundary conditions for MM5/WRF simulation. This linkage between GEOS global analysis and MM5/WRF models has made possible for a few useful applications. As one of the sample studies, a series of MM5 simulations were conducted to test the sensitivity of initial and boundary conditions to MM5 simulated precipitation over the eastern; USA. Global analyses horn different operational centers (e.g., NCEP, ECMWF, I U ASA/GSFCj were used to provide first guess field and boundary conditions for MM5. Numerical simulations were performed for one- week period over the eastern coast areas of USA. the distribution and quantities of MM5 simulated precipitation were compared. Results will be presented in the workshop. In addition,other applications from recent and future studies will also be addressed.

Pu, Zhao-Xia↗
NASA NTRS2004

Aura Earth Observing System

Aura is designed to answer questions about changes in our life-sustaining atmosphere. Aura's four instruments will study the atmosphere's chemistry and dynamics. Aura's measurements will enable us to investigate questions about ozone trends, air quality changes and their linkage to climate change. Aura's measurements will provide accurate data for predictive models and provide useful information for local and national agency decision support systems. Aura is the third in a series of large Earth observing platforms to be flown by the National Aeronautics and Space Administration (NASA) with international contributions. Aura along with EOS Terra (launched December, 1999) and Aqua (launched May, 2002) will provide an unprecedented view of the global Earth system.

Hilsenrath, Ernest↗