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All sourcesNASA NTRSDOE OSTI
DOE OSTI2017

Deconstruction of the Ras switching cycle through saturation mutagenesis

Ras proteins are highly conserved signaling molecules that exhibit regulated, nucleotide-dependent switching between active and inactive states. The high conservation of Ras requires mechanistic explanation, especially given the general mutational tolerance of proteins. Here, we use deep mutational scanning, biochemical analysis and molecular simulations to understand constraints on Ras sequence. Ras exhibits global sensitivity to mutation when regulated by a GTPase activating protein and a nucleotide exchange factor. Removing the regulators shifts the distribution of mutational effects to be largely neutral, and reveals hotspots of activating mutations in residues that restrain Ras dynamics and promote the inactive state. Evolutionary analysis, combined with structural and mutational data, argue that Ras has co-evolved with its regulators in the vertebrate lineage. Overall, our results show that sequence conservation in Ras depends strongly on the biochemical network in which it operates, providing a framework for understanding the origin of global selection pressures on proteins.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1970

Meteor research program

An overview of research on radio and radar meteors accomplished during the past decade is presented, and the work of the past year is highlighted. Velocity distribution and mass flux data are obtained for meteors in the range 10 to 0.0001 g, the size believed to be the principal hazard to space missions. The physical characteristics of mass, structure and density, luminosity, and ablation are briefly described, and the formulation of a theory for interactions of ionization and excitation during collision of atomic particles is mentioned. Five classes of meteoroids are identified, including the two of iron and stone meteorites. Stream meteors associated with known comets are Classes A or C, and parent comets of Class B streams are not observed. Class A meteoroids are identified with the core of a cometary nucleus, Class C with less dense surface of the nucleus after sublimation of ices, and Class B with less dense cores of smaller cometary nuclei. Atmospheric meteor phenomena associated with winds and gravity waves, density and temperature, atomic oxygen, and meteor rate changes are mentioned.

Southworth, R. B.↗
NASA NTRS1984

Unsolved problems in planetary ring dynamics

Voyager photographic data are used for microscopic and macroscopic analyses of the dynamics of the Saturn rings. Attention is given to particle collisions, local velocity dispersion, the particle size distribution, mechanisms governing the ring structure and interactive effects with Saturn satellite orbits. The mechanical properties and collision dynamics of the particles are discussed, along with models for perturbed and unperturbed disks. The forces involved and true scale of particle erosion are considered, as are instabilities in the rings, satellite torques, resonances, and the time scale for the evolution of the satellite orbits. Finally, the possibility that angular momentum exchanges are occurring between individual rings and satellite orbits is examined.

Borderies, N.↗
NASA NTRS1986

NASA experiments on the B-720 structure and seats

Two experiments onboard a remotely piloted transport aircraft that was crashed on landing are discussed. The structural experiment deals with the location and distribution of the instrumentation throughout the airplane structure. In the seat experiment, the development and testing of an energy absorbing seat are discussed. The objective of the structural experiment was to obtain a data base of structural crash loads for use in the advancement of crashworthy technology of materials (such as composites) in structural design and for use in the comparison between computer and experimental results. The objective of the seat experiment was to compare the performance of an energy absorbing transport seat and a standard seat when subjected to similar crash pulses. Details are given on the location of instrumentation, on the dynamic seat test pulse and headward acceleration limits.

Alfaro-Bou, E.↗
NASA NTRS1987

Lewis Information Network (LINK): Background and overview

The NASA Lewis Research Center supports many research facilities with many isolated buildings, including wind tunnels, test cells, and research laboratories. These facilities are all located on a 350 acre campus adjacent to the Cleveland Hopkins Airport. The function of NASA-Lewis is to do basic and applied research in all areas of aeronautics, fluid mechanics, materials and structures, space propulsion, and energy systems. These functions require a great variety of remote high speed, high volume data communications for computing and interactive graphic capabilities. In addition, new requirements for local distribution of intercenter video teleconferencing and data communications via satellite have developed. To address these and future communications requirements for the next 15 yrs, a project team was organized to design and implement a new high speed communication system that would handle both data and video information in a common lab-wide Local Area Network. The project team selected cable television broadband coaxial cable technology as the communications medium and first installation of in-ground cable began in the summer of 1980. The Lewis Information Network (LINK) became operational in August 1982 and has become the backbone of all data communications and video.

Schulte, Roger R.↗
NASA NTRS1989

FGK stars and T Tauri stars: Monograph series on nonthermal phenomena in stellar atmospheres

The purpose of this book, FGK Stars and T Tauri Stars, like all other volumes of this series, is to exhibit and describe the best space data and ground based data currently available, and also to describe and critically evaluate the status of current theoretical models and physical mechanisms that have been proposed to interpret these data. The method for obtaining this book was to collect manuscripts from competent volunteer authors, and then to collate and edit these contributions to form a well structured book, which will be distributed to an international community of research astronomers by NASA and by the French CNRS.

Cram, Lawrence E.↗
NASA NTRS1990

Temporal behavior of Hercules X-1 - The long-term variability of its pulse profile and the 35 day X-ray intensity modulation

Data collected by the low-energy detectors of the Hard X-Ray and Low Energy Gamma-Ray Experiment on HEAO 1 were analyzed to study the variability in the temporal behavior of Hercules X-1. Data obtained during thirteen pointed observations distributed in 35-day phase provided details on the time and the energy dependence of the pulse shape and the spectra. It was found that a structural change at the inner edge of the accretion disk, but not at the large radii, was likely to cause the 35-day as well as the observed short-term rapid variations of the pulse profile, which had a considerably more pronounced time dependence than energy dependence. It is suggested that the variable mass-channeling scheme and an intervening effect at the inner accretion disk are directly responsible for the 35-day X-ray modulation.

Soong, Y.↗
NASA NTRS1992

The design and implementation of a parallel unstructured Euler solver using software primitives

This paper is concerned with the implementation of a 3D unstructured-grid Euler-solver on massively parallel distributed-memory computer architectures. The goal is to minimize solution time by achieving high computational rates with a numerically efficient algorithm. An unstructured multigrid algorithm with an edge-based data-structure has been adopted, and a number of optimizations have been devised and implemented in order to accelerate the parallel computational rates. The implementation is carried out by creating a set of software tools, which ease the implementation of computational problems on parallel architecture machines by relieving the user of the low-level machine specific issues. The quantitative effect of the various optimizations are demonstrated, and we show that the combined effect of these optimizations leads to roughly a factor of three performance improvement. The overall solution efficiency is compared with that obtained on the CRAY-YMP vector supercomputer.

Das, R.↗
NASA NTRS2003

Investigation of Spectral Lag and Epeak as Joint Luminosity Indicators in GRBs

Models for gamma-ray bursts which invoke jetted, colliding shells would appear to have at least two determinants for luminosity, e.g., observer viewing angle and Lorentz factor, or possibly shell mass. The latter two internal physical parameters may vary from pulse to pulse within a burst, and such variation might be reflected in evolution of observables such as spectral lag and peak in the spectral energy distribution. We analyze bright BATSE bursts using the 16-channel medium energy resolution (MER) data, with time resolutions of 16 and 64 ms, measuring spectral lags and peak energies for significant pulse structures within a burst, identified using a Bayesian block algorithm. We then explore correlations between the measured parameters and total flux for the individual pulse structures.

White, Nicholas E.↗
NASA NTRS2002

Passive and Active Microwave Remote Sensing of Precipitation and Latent Heating Distributions in the Tropics from TRMM

Passive and active microwave remote sensing data are analyzed to identify signatures of precipitation and vertical motion in tropical convection. A database of cloud/radiative model simulations is used to quantify surface rain rates and latent heating profiles that are consistent with these signatures. At satellite footprint-scale (approximately 10 km), rain rate and latent heating estimates are subject to significant random errors, but by averaging the estimates in space and time, random errors are substantially reduced, Bias errors have been minimized by improving the microphysics in the supporting cloud/radiative model simulations, and by imposing a consistent definition of remotely-sensed and model-simulated convective/stratiform rain coverage. Remotely-sensed precipitation and latent heating distributions in the tropics are derived from Tropical Rainfall Measuring Mission (TRMM) and Special Sensor Microwave/ Imager (SSM/ I) sensor data. The prototype Version 6 TRMM passive microwave algorithm typically yields average heating profiles with maxima between 6 and 7 km altitude for organized mesoscale convective systems. Retrieved heating profiles for individual convective systems are compared to coincident estimates based upon a combination of dual-Doppler radar and rawinsonde data. Also, large-scale latent heating distributions are compared to estimates derived from a simpler technique that utilizes observations of surface rain rate and stratiform rain proportion to infer vertical heating structure. Results of these tests will be presented at the conference.

Olson, William S.↗
NASA NTRS2011

The Plasma Environment at Mercury

Mercury is the least explored terrestrial planet, and the one subjected to the highest flux of solar radiation in the heliosphere. Its highly dynamic, miniature magnetosphere contains ions from the exosphere and solar wind, and at times may allow solar wind ions to directly impact the planet's surface. Together these features create a plasma environment that shares many features with, but is nonetheless very different from, that of Earth. The first in situ measurements of plasma ions in the Mercury space environment were made only recently, by the Fast Imaging Plasma Spectrometer (FIPS) during the MESSENGER spacecraft's three flybys of the planet in 2008-2009 as the probe was en route to insertion into orbit about Mercury earlier this year. Here. we present analysis of flyby and early orbital mission data with novel techniques that address the particular challenges inherent in these measurements. First. spacecraft structures and sensor orientation limit the FIPS field of view and allow only partial sampling of velocity distribution functions. We use a software model of FIPS sampling in velocity space to explore these effects and recover bulk parameters under certain assumptions. Second, the low densities found in the Mercury magnetosphere result in a relatively low signal-to-noise ratio for many ions. To address this issue, we apply a kernel density spread function to guide removal of background counts according to a background-signature probability map. We then assign individual counts to particular ion species with a time-of-flight forward model, taking into account energy losses in the carbon foil and other physical behavior of ions within the instrument. Using these methods, we have derived bulk plasma properties and heavy ion composition and evaluated them in the context of the Mercury magnetosphere.

Raines, James M.↗
DOE OSTI2018

Nucleon Tomography Studies at Jefferson Lab

Protons and neutrons, are the building blocks of atomic nuclei. They constitute over 99 percent of the mass of the matter in the visible universe. A fundamental challenge of modern nuclear physics is to understand the structure of these constituents. The 12 GeV Upgrade of the Continuous Electron Beam Accelerator Facility (CEBAF) at Jefferson Lab and the construction of state-of-the-art detector systems make it a unique facility in the world to address this challenge. Electron scattering is a superb experimental tool to study the internal structure of nucleons at differing distance scales, as the resolving power of the probe can be varied. The CEBAF Upgrade was completed in September 2017 and the new generation of experiments has started. These experiments will enable a collaboration of scientists from around the world to perform precise experiments of exclusive processes covering a large range in kinematics to effectively engage in nuclear imaging, revealing hidden aspects of its internal structure, and providing insight into quark confinement forces in the nucleon, one of the greatest mysteries of modern physics. The Generalized Parton Distributions (GPDs) provide the theoretical framework to interpret the experimental data in terms of 3-dimensional imaging. In addition, recent development demonstrated that the GPD formalism enables access to the nucleon's Gravitational Form Factors that encode its mechanical properties. We will focus on the study of the Deeply Virtual Compton Scattering (DVCS), the most effective way to access GPDs. We will review the landscape of both theory and experiment, and discuss the latest results from Jefferson Lab at 6 GeV in comparison with results from other facilities, and present a first look at the new experiments with the 12 GeV Upgrade.

Elouadrhiri, Latifa↗
NASA NTRS1989

The structure of the clouds distributed operating system

A novel system architecture, based on the object model, is the central structuring concept used in the Clouds distributed operating system. This architecture makes Clouds attractive over a wide class of machines and environments. Clouds is a native operating system, designed and implemented at Georgia Tech. and runs on a set of generated purpose computers connected via a local area network. The system architecture of Clouds is composed of a system-wide global set of persistent (long-lived) virtual address spaces, called objects that contain persistent data and code. The object concept is implemented at the operating system level, thus presenting a single level storage view to the user. Lightweight treads carry computational activity through the code stored in the objects. The persistent objects and threads gives rise to a programming environment composed of shared permanent memory, dispensing with the need for hardware-derived concepts such as the file systems and message systems. Though the hardware may be distributed and may have disks and networks, the Clouds provides the applications with a logically centralized system, based on a shared, structured, single level store. The current design of Clouds uses a minimalist philosophy with respect to both the kernel and the operating system. That is, the kernel and the operating system support a bare minimum of functionality. Clouds also adheres to the concept of separation of policy and mechanism. Most low-level operating system services are implemented above the kernel and most high level services are implemented at the user level. From the measured performance of using the kernel mechanisms, we are able to demonstrate that efficient implementations are feasible for the object model on commercially available hardware. Clouds provides a rich environment for conducting research in distributed systems. Some of the topics addressed in this paper include distributed programming environments, consistency of persistent data and fault-tolerance.

Dasgupta, Partha↗
DOE OSTI2017

Local Chemical Ordering and Negative Thermal Expansion in PtNi Alloy Nanoparticles

An atomic insight into the local chemical ordering and lattice strain is particular interesting to recent emerging bimetallic nanocatalysts such as PtNi alloys. Here in this paper, we reported the atomic distribution, chemical environment and lattice thermal evolution in full-scale structural description of PtNi alloy nanoparticles (NPs). The different segregation of elements in the well-faceted PtNi nanoparticles is convinced by extended X-ray absorption fine structure (EXAFS). Atomic pair distribution function (PDF) study evidences the co-existence of the face-centered cubic and tetragonal ordering parts in the local environment of PtNi nanoparticles. Further reverse monte carlo (RMC) simulation with PDF data obviously exposed the segregation as Ni and Pt in the centers of {111} and {001} facets respectively. Layer-by-layer statistical analysis up to 6 nm for the local atomic pairs revealed the distribution of local tetragonal ordering on the surface. This local coordination environment facilitates the distribution of heteroatomic Pt-Ni pairs, which plays an important role in the negative thermal expansion of Pt 41 Ni 59 NPs. The present study on PtNi alloy NPs from local short-range coordination to long-range average lattice provides a new perspective on tailoring physical properties in nanomaterials.

36 MATERIALS SCIENCE↗
DOE OSTI2017

Partnership for Edge Physics Simulation

A major goal of our participation in the Edge Physics Simulation project has been to contribute to the understanding of the self-organization of tokamak turbulence fluctuations resulting in the formation of a staircase structure in the ion temperature. A second important goal is to demonstrate how small scale turbulence in plasmas self-organizes with dynamically driven quasi-stationary flow shear. These goals have been accomplished through the analyses of the statistical properties of XGC1 flux driven Gyrokinetic electrostatic ion temperature gradient (ITG) turbulence simulation data in which neutrals are included. The ITG turbulence data, and in particular fluctuation data, were obtained from a massively parallel flux-driven gyrokinetic full-f particle-in-cell simulation of a DIII-D like equilibrium. Below some the findings are summarized. It was observed that the emergence of staircase structure is related to the variations in the normalized temperature gradient length (R/LT) and the poloidal flow shear. Average turbulence intensity is found to be large in the vicinity of minima in R/LTi, where ITG growth is expected to be lower. The distributions of the occurrences of potential fluctuation are found to be Gaussian away from the staircase-step locations, but they are found to be non-Gaussian in the vicinity of staircase-step locations. The results of analytically derived expressions for the distribution of the occurrences of turbulence intensity and intensity flux were compared with the corresponding quantities computed using XGC1 simulation data and good agreement is found. The derived expressions predicts inward and outward propagation of turbulence intensity flux in an intermittent fashion. The outward propagation of turbulence intensity flux occurs at staircase-step locations and is related to the change in poloidal flow velocity shear and to the change in the ion temperature gradient. The standard deviation, skewness and kurtosis for turbulence quantities were computed and found to be large in the vicinity of the staircase-step structures. Large values of skewness and kurtosis can be explained by a temporary opening and closing of the structure which allows turbulence intensity events to propagate. The staircase patterns may reduce the ion heat transport and a manipulation of these patterns may be used to optimize heat transport in tokamaks. An additional objective of the research in support of the Edge Physics Simulation initiative has been to improve the understanding of scrape-off layer thermal transport. In planning experiments and designing future tokamaks, it is important to understand the physical effects that contribute to divertor heat-load fluxes. The research accomplished will contribute to developing new models for the scrape-off layer region. The XGC0 code was used to compute the heat fluxes and the heat-load width in the outer divertor plates of C-Mod and DIII-D tokamaks. It was observed that the width of the XGC0 neoclassical heat-load was approximately inversely proportional to the total plasma current. Anomalous transport in the H-mode pedestal region of five Alcator C-Mod discharges, representing a collisionality scan, was analyzed. The understanding of anomalous transport in the pedestal region is important for the development of a comprehensive model for the H-mode pedestal slope. It was found that the electron thermal anomalous diffusivities at the pedestal top increase with the electron collisionality. This dependence can point to the DRIBM as the modes that drive the anomalous transport in the plasma edge of highly collisional discharges. The effects of plasma shaping on the H-mode pedestal structure was also investigated. The differences in the predicted H-mode pedestal width and height for the DIII-D discharges with different elongation and triangularities were discussed. For the discharges with higher elongation, it was found that the gradients of the plasma profiles in the H-mode pedestal reach semi-steady states. In these simulations, the pedestal slowly continued to evolve to higher pedestal pressures and bootstrap currents until the peeling ballooning stability conditions were satisfied. The discharges with lower elongation do not reach the semi-steady state, and ELM crashes were triggered at earlier times. The plasma elongation was found to have a stronger stabilizing effect than the plasma triangularity. For the discharges with lower elongation and lower triangularity, the ELM frequency was large, and the H-mode pedestal evolves rapidly. It was found that the temperature of neutrals in the scrape-off-layer region can affect the dynamics of the H-mode pedestal buildup. However, the final pedestal profiles were nearly independent of the neutral temperature. The elongation and triangularity affected the pedestal widths of plasma density and electron temperature profiles differently. This study illustrated a new mechanism for controlling the pedestal bootstrap current and the pedestal stability.

97 MATHEMATICS AND COMPUTING↗
NASA NTRS2016

A Multi-Sensor Water Vapor, Temperature and Cloud Climate Data Record: Status of Our MEaSUREs 2012 Project

- Our primary objectives: Incorporate all A-Train water vapor, including small-scale, horizontal and vertical water vapor structure from MODIS (Moderate Resolution Imaging Spectroradiometer) and GPS (Global Positioning System); Use MODIS cloud classification that is collocated at the pixel-scale over the full AIRS/AMSU (Atmospheric Infrared Sounder/Advanced Microwave Sounding Unit) swath; Extend summaries to PDFs (Probability Distribution Functions)/higher order moments of water vapor sorted by cloud classes; Establish robust, scale-dependent statistical relationships between cloud, temperature, and water vapor PDFs for the climate modeling community. - We will also: Update our current data record to new CloudSat/CALIPSO (Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observation) cloud classification; Provide merged AIRS and MLS (Microwave Limb Sounder) water vapor profiles using averaging kernels; Include temperature and water vapor from models (ECMWF - European Centre for Medium-Range Weather Forecasts) and re-analyses (MERRA - Modern Era-Retrospective Analysis for Research and Applications); Classify METOP-A (Meteorological Operational Satellite-A) and NOAA (National Oceanic and Atmospheric Administration) satellite water vapor with AVHRR (Advanced Very High Resolution Radiometer) during SNOs (Solar Neutrino Oscillations); Compare with the NVAP-M (re-analysis and extension of the NASA Water Vapor Project (NVAP)) water vapor climatologies; Use existing data sources and mature algorithms, and document processing algorithms.

Fetzer, Eric↗
NASA NTRS2004

Hierarchical Velocity Structure in the Core of Abell 2597

We present XMM-Newton RGS and EPIC data of the putative cooling flow cluster Abell 2597. Velocities of the low-ionization emission lines in the spectrum are blue shifted with respect to the high-ionization lines by 1320 (sup +660) (sub -210) kilometers per second, which is consistent with the difference in the two peaks of the galaxy velocity distribution and may be the signature of bulk turbulence, infall, rotation or damped oscillation in the cluster. A hierarchical velocity structure such as this could be the direct result of galaxy mergers in the cluster core, or the injection of power into the cluster gas from a central engine. The uniform X-ray morphology of the cluster, the absence of fine scale temperature structure and the random distribution of the the galaxy positions, independent of velocity, suggests that our line of sight is close to the direction of motion. These results have strong implications for cooling flow models of the cluster Abell 2597. They give impetus to those models which account for the observed temperature structure of some clusters using mergers instead of cooling flows.

Still, Martin↗
NASA NTRS1977

Evidence for two major changes in the Venus aerosol distribution - 1972-1975

High-spatial-and-spectral-resolution observations of Venus CO2 line profiles taken over a three-year interval are analyzed using inhomogeneous atmospheric models with anisotropic scattering. The data exhibit two sudden significant changes in the structure of the atmosphere, one occurring near April 1973, and the other near November 1974. Two models are developed to describe the vertical cloud structure of the atmosphere of Venus in the more quiescent periods after these changes. For each model, the CO2 specific abundance must decrease with increasing atmospheric pressure; i.e., the clouds are thinnest high in the atmosphere and become denser with depth. No evidence is found that the cloud particles must change their scattering phase function with altitude.

Cochran, W. D.↗