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At least 1,207 records · Page 67

Salience Assignment for Multiple-Instance Data and Its Application to Crop Yield Prediction

An algorithm was developed to generate crop yield predictions from orbital remote sensing observations, by analyzing thousands of pixels per county and the associated historical crop yield data for those counties. The algorithm determines which pixels contain which crop. Since each known yield value is associated with thousands of individual pixels, this is a multiple instance learning problem. Because individual crop growth is related to the resulting yield, this relationship has been leveraged to identify pixels that are individually related to corn, wheat, cotton, and soybean yield. Those that have the strongest relationship to a given crop s yield values are most likely to contain fields with that crop. Remote sensing time series data (a new observation every 8 days) was examined for each pixel, which contains information for that pixel s growth curve, peak greenness, and other relevant features. An alternating-projection (AP) technique was used to first estimate the "salience" of each pixel, with respect to the given target (crop yield), and then those estimates were used to build a regression model that relates input data (remote sensing observations) to the target. This is achieved by constructing an exemplar for each crop in each county that is a weighted average of all the pixels within the county; the pixels are weighted according to the salience values. The new regression model estimate then informs the next estimate of the salience values. By iterating between these two steps, the algorithm converges to a stable estimate of both the salience of each pixel and the regression model. The salience values indicate which pixels are most relevant to each crop under consideration.

Wagstaff, Kiri L.↗

A Phenome-Wide Association Study of genes associated with COVID-19 severity reveals shared genetics with complex diseases in the Million Veteran Program

The study aims to determine the shared genetic architecture between COVID-19 severity with existing medical conditions using electronic health record (EHR) data. We conducted a Phenome-Wide Association Study (PheWAS) of genetic variants associated with critical illness (n = 35) or hospitalization (n = 42) due to severe COVID-19 using genome-wide association summary data from the Host Genetics Initiative. PheWAS analysis was performed using genotype-phenotype data from the Veterans Affairs Million Veteran Program (MVP). Phenotypes were defined by International Classification of Diseases (ICD) codes mapped to clinically relevant groups using published PheWAS methods. Among 658,582 Veterans, variants associated with severe COVID-19 were tested for association across 1,559 phenotypes. Variants at the ABO locus (rs495828, rs505922) associated with the largest number of phenotypes (n rs495828 = 53 and n rs505922 = 59); strongest association with venous embolism, odds ratio (OR rs495828 1.33 (p = 1.32 x 10 –199 ), and thrombosis OR rs505922 1.33, p = 2.2 x10 -265 . Among 67 respiratory conditions tested, 11 had significant associations including MUC5B locus (rs35705950) with increased risk of idiopathic fibrosing alveolitis OR 2.83, p = 4.12 × 10 –191 ; CRHR1 (rs61667602) associated with reduced risk of pulmonary fibrosis, OR 0.84, p = 2.26× 10 –12 . The TYK2 locus (rs11085727) associated with reduced risk for autoimmune conditions, e.g., psoriasis OR 0.88, p = 6.48 x10 -23 , lupus OR 0.84, p = 3.97 x 10 –06 . PheWAS stratified by ancestry demonstrated differences in genotype-phenotype associations. LMNA (rs581342) associated with neutropenia OR 1.29 p = 4.1 x 10 –13 among Veterans of African and Hispanic ancestry but not European. Overall, we observed a shared genetic architecture between COVID-19 severity and conditions related to underlying risk factors for severe and poor COVID-19 outcomes. Differing associations between genotype-phenotype across ancestries may inform heterogenous outcomes observed with COVID-19. Divergent associations between risk for severe COVID-19 with autoimmune inflammatory conditions both respiratory and non-respiratory highlights the shared pathways and fine balance of immune host response and autoimmunity and caution required when considering treatment targets.

59 BASIC BIOLOGICAL SCIENCES↗

WHOLESCALE: Seismic Survey Metadata from San Emidio Nevada 2021

This is a collection of metadata from the 2021 seismic survey at the San Emidio geothermal field in Nevada. In April and May 2021, 37 tri-axial short period seismographs were deployed in a 1.8km diameter cluster centered on 40.367278 deg N, 119.409019 deg W. The first data record started at 2021-04-06T07:09:10Z UTC and the last record ended 2021-05-11T02:58:52Z UTC. The 37 stations included 29 SmartSolo IGU-16HR 3C all-in-one 5 Hz seismographs and 8 DataCube seismographs with 4.5 Hz HGS HG-6(B coil) tri-axial geophones. The raw format (level 0) data includes 353 GB of 500 sps SmartSolo data in native DLD format, 113 GB of 400 sps DataCube data in native DataCube format, and 3.4 GB of GPS data collected during the RTK GPS survey. The SAC data (level 1) files include 564 GB of hourly SAC files. The experiment was designed to monitor seismic activity before, during, and after the planned three-day plant maintenance shutdown April 19-21, 2021. The pumping stopped at 2021/04/19 12:51:45 UTC and resumed about 2021/04/21 21:00:00 UTC. The raw and processed data are in an associated GDR submission, linked below. The metadata here includes files containing experiment details, station locations, seismic data logger specifications, instrumentation specifications, and descriptions of data. Also included are data and metadata from a 2016 seismic survey at the same site.

15 GEOTHERMAL ENERGY↗

Radar remote sensing for crop classification and canopy condition assessment: Ground-data documentation

A vegetation and soil-moisture experiment was conducted in order to examine the microwave emission and backscattering from vegetation canopies and soils. The data-acquisition methodology used in conjunction with the mobile radar scatterometer (MRS) systems is described and associated ground-truth data are documented. Test fields were located in the Kansas River floodplain north of Lawrence, Kansas. Ten fields each of wheat, corn, and soybeans were monitored over the greater part of their growing seasons. The tabulated data summarize measurements made by the sensor systems and represent target characteristics. Target parameters describing the vegetation and soil characteristics include plant moisture, density, height, and growth stage, as well as soil moisture and soil-bulk density. Complete listings of pertinent crop-canopy and soil measurements are given.

Ulaby, F. T.↗

Multiple Use One-Sided Hypotheses Testing in Univariate Linear Calibration

Consider a normally distributed response variable, related to an explanatory variable through the simple linear regression model. Data obtained on the response variable, corresponding to known values of the explanatory variable (i.e., calibration data), are to be used for testing hypotheses concerning unknown values of the explanatory variable. We consider the problem of testing an unlimited sequence of one sided hypotheses concerning the explanatory variable, using the corresponding sequence of values of the response variable and the same set of calibration data. This is the situation of multiple use of the calibration data. The tests derived in this context are characterized by two types of uncertainties: one uncertainty associated with the sequence of values of the response variable, and a second uncertainty associated with the calibration data. We derive tests based on a condition that incorporates both of these uncertainties. The solution has practical applications in the decision limit problem. We illustrate our results using an example dealing with the estimation of blood alcohol concentration based on breath estimates of the alcohol concentration. In the example, the problem is to test if the unknown blood alcohol concentration of an individual exceeds a threshold that is safe for driving.

Krishnamoorthy, K.↗

BOREAS TF-10 NSA-YJP Tower Flux, Meteorological, and Porometry Data

The BOREAS TF-10 team collected tower flux and meteorological data at two sites, a fen and a young jack pine forest, near Thompson, Manitoba, Canada, as part of BOREAS. A preliminary data set was assembled in August 1993 while field testing the instrument packages, and at both sites data were collected from 15-Aug to 31-Aug. The main experimental period was in 1994, when continuous data were collected from the young jack pine site from 23-May to 20-Sep. Upon examination of the 1994 data set, it became clear that the behavior of the heat, water, and carbon dioxide fluxes throughout the whole growing season was an important scientific question, and that the 1994 data record was not sufficiently long to capture the character of the seasonal behavior of the fluxes. Thus, the young jack pine site was operated from 08-May to 07-Nov in 1996 in order to collect data from spring melt to autumn freeze-up. All variables are presented as 30-minute averages. Supporting data were also collected to describe the surface#s state and to provide the information, in association with the flux data, to build SVAT models. For the young jack pine site, these supporting data included stomatal conductance measurements. The data are stored in tabular ASCII files.

McCaughey, J. Harry↗

From Data to Knowledge: A Graph-Based Reliability Approach to Assess System Health

With the goal of maximizing plant reliability and availability, complex systems such as nuclear power plants continuously monitor and record the performance and the health status of many components, assets, and systems. Such data may take the form of online monitoring data, condition reports, and maintenance reports and it carries the potential to provide system engineers with insights into anomalous behaviors or degradation trends as well as the possible causes behind them and to predict their direct consequences. The analysis of such data poses however few challenges. While some of these challenges are technical in nature (i.e., data are often distributed over several physical servers or databases), others are conceptual in nature (i.e., data elements come in different formats, numeric or textual), and measured values have different scales (e.g., vibration spectra and oil temperature). This paper directly tackles these challenges, and it focuses on the integration of all these data elements in order to assist plant system engineers in analyzing component, assets, and systems performances and optimize maintenance activities. This is performed by 1) extracting knowledge from textual data via technical language processing methods, and 2) quantifying system, asset, and component health from numeric condition-based data. We rely on model-based system engineering (MBSE) models of systems and assets to identify their architecture and functional (i.e., cause and effect) relations. Numeric and textual data elements are then associated with an MBSE graph element, based on their nature. This bonding of MBSE models and data elements constitutes a first-of-its-kind knowledge graph of a nuclear power plants system, with data elements being organized in a structured manner that enables system engineers to identify cause-effect trends in data elements and carry out appropriate actions in response.

97 MATHEMATICS AND COMPUTING↗

The OB associations of 30 Doradus in the Large Magellanic Cloud. I - Stellar observations and data reductions

UBV photometry is presented for 2400 stars in the OB associations of 30 Doradus in the Large Magellanic Cloud, and I discuss new spectroscopic observations of 54 stars including 24 O stars. The CCD fields cover an area of 50 square arcminutes in the central region. The entire catalog (exclusive of the dense core cluster R 136) is photometrically complete to V = B = 18 mag and U = 17 mag, although the completeness magnitudes are fainter for regions with less nebular contamination.

Parker, Joel W.↗

Enabling Space Biological Knowledge Discovery Through Image and Video Data Sharing

Increased biomedical risks associated with deep space crewed missions (cis-Lunar, Mars transit/surface) require development of health countermeasures, novel ecosystem support, risk modeling, and fundamental space biological knowledge discovery. Molecular-omics, physiological-phenotypic-behavioral, and environmental-radiation telemetry data from space biological and health studies are needed for reuse by scientists to address these tasks. The data as well as space-relevant biospecimens are being made more findable, accessible, interoperable, and reusable through NASA’s Open Science Data Repository (OSDR). This new OSDR umbrella grouping includes NASA GeneLab, the NASA Ames Life Sciences Data Archive (ALSDA), and the NASA Biological Institutional Scientific Collection. The OSDR system design appropriately handles metadata and processed-tabular results from ALSDA studies collected from space experiments. But raw and processed ALSDA bioimage and video datasets require an expansion of OSDR’s data architecture to handle ingestion, curation, and egress. The academic-industry bioimaging field saw a scientific renaissance in the past several years through leveraging open-source software, international collaborations, machine learning, and other open science/programming approaches. As crewed missions and more biological experiments are on the deep space horizon, OSDR is embracing data stewardship through listening to feedback from subject matter experts and designing an expanded architecture which is appropriate for NASA’s goals to enable analysis and reuse of bioimaging and video data for the public science community.Discovery Through Image and Video Data Sharing

space biology↗

Synergistic ground and orbital observations of iron oxides on Mt. Sharp and Vera Rubin ridge

Visible/short-wave infrared spectral data from the Compact Reconnaissance Imaging Spectrometer for Mars (CRISM) show absorptions attributed to hematite at Vera Rubin ridge (VRR), a topographic feature on northwest Mt. Sharp. The goals of this study are to determine why absorptions caused by ferric iron are strongly visible from orbit at VRR, and to improve interpretation of CRISM data throughout lower Mt. Sharp. These goals are achieved by analyzing coordinated CRISM and in situ spectral data along the Curiosity Mars rover’s traverse. VRR bedrock within areas that have the deepest ferric absorptions in CRISM data also have the deepest ferric absorptions measured in situ. This suggests strong ferric absorptions are visible from orbit at VRR because of the unique spectral properties of VRR bedrock. Dust and mixing with basaltic sand additionally inhibit the ability to measure ferric absorptions in bedrock stratigraphically below VRR from orbit. There are two implications of these findings: (1) Ferric absorptions in CRISM data initially dismissed as noise could be real, and ferric phases are more widespread in lower Mt. Sharp than previously reported, (2) Patches with the deepest ferric absorptions in CRISM data are, like VRR, reflective of deeper absorptions in the bedrock. One model to explain this spectral variability is late-stage diagenetic fluids that changed the grain size of ferric phases, deepening absorptions. Curiosity’s experience highlights the strengths of using CRISM data for spectral absorptions and associated mineral detections, and the caveats in using these data for geologic interpretations and strategic path planning tools.

58 GEOSCIENCES↗

Road Lidar Dataset for the TxDOT Austin District

This is a road lidar data collection for developing road elevation models and road inundation mapping methodologies, a joint work between ORNL and The University of Texas at Austin. This dataset is generated as part of the flood transportation infrastructure, partly funded by the NOAA CIROH project. ORNL is a project partner for high-performance computing-empowered flood inundation mapping methodology R&D. The dataset is computed using a GPU-accelerated lidar data processing workflow developed at ORNL. The lidar data source is from TxGIO, the state lidar data collection site. The output dataset is in two formats: laz and copc. It is organized by TxDOT's maintenance sections, covering the Austin District. Data size: 3.86 billion road lidar points, 1.67% of the entire lidar data input Projection: EPSG:32614 (WGS84/UTM zone 14N) Website: https://web.corral.tacc.utexas.edu/nfiedata/road3d/austin_district/AustinMaintenanceSections_H_epsg6343_V_epsg5703/ LICENSE FOR USE -- MAPS AND DATA DISCLAIMER This resource is shared under the Creative Commons Attribution CC BY, http://creativecommons.org/licenses/by/4.0/ MAPS AND DATA DISCLAIMER The Oak Ridge National Laboratory (ORNL) shall not be held liable for improper or incorrect use of the data described or information contained on this map or associated series of maps. The data and related map graphics are not legal, land survey or engineering documents and are not intended to be used as such. ORNL gives no warranty, express or implied, as to the accuracy, reliability, utility or completeness of this information. The user of these maps and data assumes all responsibility and risk for the use of the maps and data. ORNL disclaims all warranties, representations or endorsements either express or implied, with regard to the information contained in this map product, including, but not limited to, all implied warranties of merchantability, fitness for a particular purpose or non-infringement. This preliminary map product is for research and review purposes only. It is not intended to be used for emergency management operational or life safety decisions at the local or regional governmental level or by the general public. Users requiring information regarding hazardous conditions or meteorological conditions for specific geographic areas should consult directly with their city or county emergency management office.

54 ENVIRONMENTAL SCIENCES↗

A derivation of the statistical characteristics of SAR imagery data

Basic statistical properties of the speckle effect and the associated spatial correlation of SAR image data are discussed. Statistics of SAR sensed measurement and their relationships to the surface mean power reflectivity are derived. The Rayleigh speckle model is reviewed. Applications of the derived statistics to SAR radiometric measures and image processing are considered.

Wu, C.↗

Compiling the space shuttle wind tunnel data base: An exercise in technical and managerial innovators

Engineers evaluating Space Shuttle flight data and performance results are using a massive data base of wind tunnel test data. A wind tunnel test data base of the magnitude attained is a major accomplishment. The Apollo program spawned an automated wind tunnel data analysis system called SADSAC developed by the Chrysler Space Division. An improved version of this system renamed DATAMAN was used by Chrysler to document analyzed wind tunnel data and data bank the test data in standardized formats. These analysis documents, associated computer graphics and standard formatted data were disseminated nationwide to the Shuttle technical community. These outputs became the basis for substantiating and certifying the flight worthiness of the Space Shuttle and for improving future designs. As an aid to future programs this paper documents the lessons learned in compiling the massive wind tunnel test data base for developing the Space Shuttle. In particular, innovative managerial and technical concepts evolved in the course of conceiving and developing this successful DATAMAN system and the methods and organization for applying the system are presented.

Kemp, N. D.↗

Fractal Characterization of Multitemporal Scaled Remote Sensing Data

Scale is an "innate" concept in geographic information systems. It is recognized as something that is intrinsic to the ingestion, storage, manipulation, analysis, modeling, and output of space and time data within a GIS purview, yet the relative meaning and ramifications of scaling spatial and temporal data from this perspective remain enigmatic. As GISs become more sophisticated as a product of more robust software and more powerful computer systems, there is an urgent need to examine the issue of scale, and its relationship to the whole body of spatiotemporal data, as imparted in GISS. Scale is fundamental to the characterization of geo-spatial data as represented in GISS, but we have relatively little insight on the effects of, or how to measure the effects of, scale in representing multiscaled data; i.e., data that are acquired in different formats (e.g., map, digital) and exist in varying spatial, temporal, and in the case of remote sensing data, radiometric, configurations. This is particularly true in the emerging era of Integrated GISs (IGIS), wherein spatial data in a variety of formats (e.g., raster, vector) are combined with multiscaled remote sensing data, capable of performing highly sophisticated space-time data analyses and modeling. Moreover, the complexities associated with the integration of multiscaled data sets in a multitude of formats are exacerbated by the confusion of what the term "scale" is from a multidisciplinary perspective; i.e., "scale" takes on significantly different meanings depending upon one's disciplinary background and spatial perspective which can lead to substantive confusion in the input, manipulation, analyses, and output of IGISs (Quattrochi, 1993). Hence, we must begin to look at the universality of scale and begin to develop the theory, methods, and techniques necessary to advance knowledge on the "Science of Scale" across a wide number of spatial disciplines that use GISs.

Quattrochi, Dale A.↗

A visiting scientist program for the burst and transient source experiment

During this project, Universities Space Research Association provided program management and the administration for overseeing the performance of the total contractual effort. The program director and administrative staff provided the expertise and experience needed to efficiently manage the program.USRA provided a program coordinator and v visiting scientists to perform scientific research with Burst and Transient Source Experiment (BATSE) data. This research was associated with the primary scientific objectives of BATSE and with the various BATSE collaborations which were formed in response to the Compton Gamma Ray Observatory Guest Investigator Program. USRA provided administration for workshops, colloquia, the preparation of scientific documentation, etc. and also provided flexible program support in order to meet the on-going needs of MSFC's BATSE program. USRA performed tasks associated with the recovery, archiving, and processing of scientific data from BATSE. A bibliography of research in the astrophysics discipline is attached as Appendix 1. Visiting Scientists and Research Associates performed activities on this project, and their technical reports are attached as Appendix 2.

Kerr, Frank J.↗

Pilot climate data system user's guide

Instructions for using the Pilot Climate Data System (PCDS), an interactive, scientific data management system for locating, obtaining, manipulating, and displaying climate-research data are presented. The PCDS currently provides this supoort for approximately twenty data sets. Figures that illustrate the terminal displays which a user sees when he/she runs the PCDS and some examples of the output from this system are included. The capabilities which are described in detail allow a user to perform the following: (1) obtain comprehensive descriptions of a number of climate parameter data sets and the associated sensor measurements from which they were derived; (2) obtain detailed information about the temporal coverage and data volume of data sets which are readily accessible via the PCDS; (3) extract portions of a data set using criteria such as time range and geographic location, and output the data to tape, user terminal, system printer, or online disk files in a special data-set-independent format; (4) access and manipulate the data in these data-set-independent files, performing such functions as combining the data, subsetting the data, and averaging the data; and (5) create various graphical representations of the data stored in the data-set-independent files.

Reph, M. G.↗

NASA climate data catalog

This document provides a summary of information available in the NASA Climate Data Catalog. The catalog provides scientific users with technical information about selected climate parameter data sets and the associated sensor measurements from which they are derived. It is an integral part of the Pilot Climate Data System (PCDS), an interactive, scientific management system for locating, obtaining, manipulating, and displaying climate research data. The catalog is maintained in a machine readable representation which can easily be accessed via the PCDS. The purposes, format and content of the catalog are discussed. Summarized information is provided about each of the data sets currently described in the catalog. Sample detailed descriptions are included for individual data sets or families of related data sets.

Reph, M. G.↗