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All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

FY20 Improvements to CTF Code Verification and Unit Testing

In 2010, the U.S. Department of Energy created its first Energy Innovation Hub, which focuses on improving Light Water Reactors (LWRs) through Modeling and Simulation. This hub, named the Consortium for the Advanced Simulation of LWRs (CASL), attempts to characterize and understand LWR behavior under normal operating conditions and use any gained insights to improve their efficiency. In collaboration with North Carolina State University (NCSU), CASL has worked extensively on the thermal-hydraulic subchannel code Coolant Boiling in Rod Arrays–Three Field (COBRA-TF). The NCSU/CASL version of COBRA-TF has been rebranded as CTF. This document focuses on code verification test problems that ensure CTF converges to the correct answer for the intended application. The suite of code verification tests are mapped to the underlying conservation equations of CTF, and significant gaps are addressed. Convergence behavior and numerical errors are quantified for each of the tests. Tests that converge at the correct rate to the corresponding analytic solution are incorporated into the CTF automated regression suite. A new verification utility is created for this purpose, which enables code verification by generalizing the process. For problems that do not behave correctly, the results are reported but the problem is not included in the regression suite. In addition to verification studies, this document also quantifies the existing tests of constitutive models. A few existing gaps are addressed by adding new unit tests.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2025

Staged Z-Pinch Modeling with Hydra and Chicago Codes (CRADA Final Report)

This was a collaborative effort between Lawrence Livermore National Security, LLC (“Contractor”), as manager and operator of Lawrence Livermore National Laboratory (“LLNL”) and Magneto Inertial Fusion Technologies, Inc. ("MIFTI" or "Participant"), to develop staged Z-pinch (SZP) modeling with HYDRA and CHICAGO codes. The contractor performed numerical simulations of the SZP to reproduce and validate Participant’s MACH2 simulations. Contractor used the state-of-the-art, radiation-magneto-hydrodynamic code HYDRA, as well as the hybrid particle-in-cell code CHICAGO. This work helped assess the physical and numerical uncertainties associated with the simulations and the overall fusion scheme. HYDRA is a well-established and validated code. This work has helped to independently assess the SZP concept to give confidence to the Participant and to the broader fusion community.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2024

Leveraging MARVEL and SPHERE to Demonstrate NEAMS Thermal Hydraulics Codes

The Single Primary Heat Extraction and Removal Emulator (SPHERE) and Microreactor Applications Research Validation and Evaluation (MARVEL) were utilized to demonstrate thermal hydraulics codes of the Nuclear Energy Advanced Modeling and Simulation (NEAMS) program. A recent long-duration test of a sodium heat pipe conducted at the SPHERE facility was utilized for the validation of the heat pipe code Sockeye. The first 10 hours of operation featured a startup of the heat pipe from room temperature; this portion was modeled with Sockeye and compared to the experimental data. Measurements included several thermocouple measurements across the length of the heat pipe surface. Two of Sockeye’s heat pipe models were applied to experiment, as well as several models of the cooling at the condenser end of the heat pipe. Sockeye results gave a decent match to the experimental data, with notable discrepancy in the condenser section, where experimental data indicated a significant inactive length of the heat pipe. The MARVEL microreactor was modeled through a coupled simulation of System Analysis Module (SAM) and SubChannel Module (SCM). This multiscale coupled simulation was performed as an exercise to demonstrate the compatibility and applicability of these codes for thermal-hydraulic analysis of microreactors. The coupling between the SCM and SAM codes for multiscale modeling of MARVEL, was achieved through a domain overlapping approach. In this example a transient SAM simulation provided boundary conditions to SCM, and SCM provided pressure drop to SAM.

97 - MATHEMATICS AND COMPUTING↗
DOE OSTI2026

Deflagration to Detonation Transition Update: XDDT Code Modularization

A legacy FORTRAN 77 implementation of the Baer–Nunziato two-phase mixture theory for deflagration-to-detonation transition (DDT) in reactive granular materials—hereafter the XDDT (eXplosive DDT) code—has been modularized to Fortran 90 with modular structure, external input files, and adaptive mesh capability. During validation, two code defects were identified and corrected: an inconsistency in the nodal solid pressure evaluation and a nonphysical burn-front tracking criterion. The ignition criterion was also corrected to use the granular surface temperature from the interface heat transfer model, matching the original Baer implementation. An initial attempt to validate against Figure 3 of the original Baer and Nunziato (1986) paper revealed that the code’s detonation velocity on a 201-node mesh (5.5 km/s) was approximately 21% below the expected Chapman–Jouguet value for 70% TMD HMX (∼7 km/s). Validation was redirected to the piston-driven DDT experiments of McAfee et al. (1989), Shot B-9036, for which well-characterized ionization-pin data are available. With the compaction-burn coefficient calibrated to 𝐶 𝛼 = 75, the XDDT code reproduces the DDT transition time to within 0.4% and produces a steady-state detonation velocity within 4% of the McAfee experimental value of 6.36 km/s. The burn model was generalized to support pressure-dependent exponents, enabling application to nitrocellulose-based ball propellants (TS3659) with a cube-root pressure dependence. Validation against the Sandusky/Baer PDC82 piston-impact experiment yielded a reactive wave velocity of 2.3–2.8 km/s, in good agreement with the experimental value of ∼2.2 km/s, and wave coalescence within 5% of the experimental timing. The mathematical model, input parameter requirements, and a roadmap for extending XDDT to PETN with an autocatalytic burn model are presented.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗
DOE OSTI2021

Utilizing Amino Acid Composition and Entropy of Potential Open Reading Frames to Identify Protein-Coding Genes

One of the main steps in gene-finding in prokaryotes is determining which open reading frames encode for a protein, and which occur by chance alone. There are many different methods to differentiate the two; the most prevalent approach is using shared homology with a database of known genes. This method presents many pitfalls, most notably the catch that you only find genes that you have seen before. The four most popular prokaryotic gene-prediction programs (GeneMark, Glimmer, Prodigal, Phanotate) all use a protein-coding training model to predict protein-coding genes, with the latter three allowing for the training model to be created ab initio from the input genome. Different methods are available for creating the training model, and to increase the accuracy of such tools, we present here GOODORFS, a method for identifying protein-coding genes within a set of all possible open reading frames (ORFS). Our workflow begins with taking the amino acid frequencies of each ORF, calculating an entropy density profile (EDP), using KMeans to cluster the EDPs, and then selecting the cluster with the lowest variation as the coding ORFs. To test the efficacy of our method, we ran GOODORFS on 14,179 annotated phage genomes, and compared our results to the initial training-set creation step of four other similar methods (Glimmer, MED2, PHANOTATE, Prodigal). We found that GOODORFS was the most accurate (0.94) and had the best F1-score (0.85), while Glimmer had the highest precision (0.92) and PHANOTATE had the highest recall (0.96).

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2017

IMAGING ANALYSIS OF THE HARD X-RAY TELESCOPE ProtoEXIST2 AND NEW TECHNIQUES FOR HIGH-RESOLUTION CODED-APERTURE TELESCOPES

Wide-field (≳100 deg{sup 2}) hard X-ray coded-aperture telescopes with high angular resolution (≲2′) will enable a wide range of time domain astrophysics. For instance, transient sources such as gamma-ray bursts can be precisely localized without the assistance of secondary focusing X-ray telescopes to enable rapid followup studies. On the other hand, high angular resolution in coded-aperture imaging introduces a new challenge in handling the systematic uncertainty: the average photon count per pixel is often too small to establish a proper background pattern or model the systematic uncertainty in a timescale where the model remains invariant. We introduce two new techniques to improve detection sensitivity, which are designed for, but not limited to, a high-resolution coded-aperture system: a self-background modeling scheme which utilizes continuous scan or dithering operations, and a Poisson-statistics based probabilistic approach to evaluate the significance of source detection without subtraction in handling the background. We illustrate these new imaging analysis techniques in high resolution coded-aperture telescope using the data acquired by the wide-field hard X-ray telescope ProtoEXIST2 during a high-altitude balloon flight in fall 2012. We review the imaging sensitivity of ProtoEXIST2 during the flight, and demonstrate the performance of the new techniques using our balloon flight data in comparison with a simulated ideal Poisson background.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

The Event Horizon General Relativistic Magnetohydrodynamic Code Comparison Project

Recent developments in compact object astrophysics, especially the discovery of merging neutron stars by LIGO, the imaging of the black hole in M87 by the Event Horizon Telescope, and high- precision astrometry of the Galactic Center at close to the event horizon scale by the GRAVITY experiment motivate the development of numerical source models that solve the equations of general relativistic magnetohydrodynamics (GRMHD). In this work we compare GRMHD solutions for the evolution of a magnetized accretion flow where turbulence is promoted by the magnetorotational instability from a set of nine GRMHD codes: Athena++, BHAC, Cosmos++, ECHO, H-AMR, iharm3D, HARM-Noble, IllinoisGRMHD, and KORAL. Agreement among the codes improves as resolution increases, as measured by a consistently applied, specially developed set of code performance metrics. Thus, we decide that the community of GRMHD codes is mature, capable, and consistent on these test problems.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Implementation of Chemistry in the Athena++ Code

Chemistry plays a key role in many aspects of astrophysical fluids. Atoms and molecules are agents for heating and cooling, determine the ionization fraction, serve as observational tracers, and build the molecular foundation of life. We present the implementation of a chemistry module in the publicly available magnetohydrodynamic code Athena++ . We implement several chemical networks and heating and cooling processes suitable for simulating the interstellar medium (ISM). A general chemical network framework in the KIDA format is also included, allowing users to easily implement their own chemistry. Radiation transfer and cosmic-ray ionization are coupled with chemistry and solved with the simple six-ray approximation. The chemical and thermal processes are evolved as a system of coupled ordinary differential equations with an implicit solver from the CVODE library. We perform and present a series of tests to ensure the numerical accuracy and convergence of the code. Many tests combine chemistry with gas dynamics, including comparisons with analytic solutions, 1D problems of the photodissociation regions and shocks, and realistic 3D simulations of the turbulent ISM. We release the code with the new public version of Athena++ , aiming to provide a robust and flexible code for the astrochemical simulation community.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2026

Entity—Hardware-agnostic Particle-in-cell Code for Plasma Astrophysics. I. Curvilinear Special Relativistic Module

Entity is a new-generation, fully open-source particle-in-cell (PIC) code developed to overcome key limitations in astrophysical plasma modeling, particularly the extreme separation of scales and the performance challenges associated with evolving, GPU-centric computing infrastructures. It achieves hardware-agnostic performance portability across various GPU and CPU architectures using the Kokkos library. Crucially, Entity maintains a high standard for usability, clarity, and customizability, offering a robust and easy-to-use framework for developing new algorithms and grid geometries, which allows extensive control without requiring edits to the core source code. This paper details the core general-coordinate special relativistic module. Entity is the first PIC code designed to solve the Vlasov–Maxwell system in general coordinates, enabling a coordinate-agnostic framework that provides the foundational structure for straightforward extension to arbitrary coordinate geometries. The core methodology achieves numerical stability by solving particle equations of motion in the global orthonormal Cartesian basis, despite using generalized coordinates like Cartesian, axisymmetric spherical, and quasi-spherical grids. Charge conservation is ensured via a specialized current deposition technique using conformal currents. The code exhibits robust scalability and performance portability on major GPU platforms (AMD MI250X, NVIDIA A100, and Intel Max Series), with the 3D particle pusher and the current deposition operating efficiently at about 2 ns per particle per time step. Functionality is validated through a comprehensive suite of standard Cartesian plasma tests and the accurate modeling of relativistic magnetospheres in curvilinear axisymmetric geometries.

Hakobyan, Hayk [Flatiron Institute, New York, NY (↗
DOE OSTI2023

Progress in the validation of rotor aerodynamic codes using field data

Within the framework of the fourth phase of the International Energy Agency (IEA) Wind Task 29, a large comparison exercise between measurements and aeroelastic simulations has been carried out featuring three simulation cases in axial, sheared and yawed inflow conditions. Results were obtained from more than 19 simulation tools originating from 12 institutes, ranging in fidelity from blade element momentum (BEM) to computational fluid dynamics (CFDs) and compared to state-of-the-art field measurements from the 2 MW DanAero turbine. More than 15 different variable types ranging from lifting-line variables to blade surface pressures, loads and velocities have been compared for the different conditions, resulting in over 250 comparison plots. The result is a unique insight into the current status and accuracy of rotor aerodynamic modeling. For axial flow conditions, a good agreement was found between the various code types, where a dedicated grid sensitivity study was necessary for the CFD simulations. However, compared to wind tunnel experiments on rotors featuring controlled conditions, it remains a challenge to achieve good agreement of absolute levels between simulations and measurements in the field. For sheared inflow conditions, uncertainties due to rotational and unsteady effects on airfoil data result in the CFD predictions standing out above the codes that need input of sectional airfoil data. However, it was demonstrated that using CFD-synthesized airfoil data is an effective means to bypass this shortcoming. For yawed flow conditions, it was observed that modeling of the skewed wake effect is still problematic for BEM codes where CFD and free vortex wake codes inherently model the underlying physics correctly. The next step is a comparison in turbulent inflow conditions, which is featured in IEA Wind Task 47. Doing this analysis in cooperation under the auspices of the IEA Wind Technology Collaboration Program (TCP) has led to many mutual benefits for the participants. The large size of the consortium brought ample manpower for the analysis where the learning process by combining several complementary experiences and modeling techniques gave valuable insights that could not be found when the analysis is carried out individually.

17 WIND ENERGY↗
NASA NTRS1968

A new class of cyclic codes.

Primitive root codes /error correcting codes/ consisting of cyclic codes and forming linear mapping of Reed-Solomon codes

Anderson, D. R.↗
NASA NTRS1972

The DOPEX Code: an Application of the Method of Steepest Descent to Laminated-Shield-Weight Optimization with Several Constraints

A two- or three-constraint, two-dimensional radiation shield weight optimization procedure and a computer program, DOPEX, is described. The DOPEX code uses the steepest descent method to alter a set of initial (input) thicknesses for a shield configuration to achieve a minimum weight while simultaneously satisfying dose constaints. The code assumes an exponential dose-shield thickness relation with parameters specified by the user. The code also assumes that dose rates in each principal direction are dependent only on thicknesses in that direction. Code input instructions, FORTRAN 4 listing, and a sample problem are given. Typical computer time required to optimize a seven-layer shield is about 0.1 minute on an IBM 7094-2.

Lahti, G. P.↗
NASA NTRS1971

Modification of codes NUALGAM and BREMRAD, Volume 1

The NUGAM2 code predicts forward and backward angular energy differential and integrated distributions for gamma photons and fluorescent radiation emerging from finite laminar transport media. It determines buildup and albedo data for scientific research and engineering purposes; it also predicts the emission characteristics of finite radioisotope sources. The results are shown to be in very good agreement with available published data. The code predicts data for many situations in which no published data is available in the energy range up to 5 MeV. The NUGAM3 code predicts the pulse height response of inorganic (NaI and CsI) scintillation detectors to gamma photons. Because it allows the scintillator to be clad and mounted on a photomultiplier as in the experimental or industrial application, it is a more practical and thus useful code than others previously reported. Results are in excellent agreement with published Monte Carlo and experimental data in the energy range up to 4.5 MeV.

Steyn, J. J.↗
NASA NTRS1972

STEEP32 computer code

A manual is presented as an aid in using the STEEP32 code. The code is the EXEC 8 version of the STEEP code (STEEP is an acronym for shock two-dimensional Eulerian elastic plastic). The major steps in a STEEP32 run are illustrated in a sample problem. There is a detailed discussion of the internal organization of the code, including a description of each subroutine.

Goerke, W. S.↗
NASA NTRS1972

On the structure of rate 1/n convolutional codes.

It is shown what choice there is in assigning output digits to transitions of binary rate 1/n code trellis so that the latter will correspond to a convolutional code. A new upper bound on free distance of rate 1/n convolutional codes is also derived, and the results obtained are used to determine the length of the largest input sequence that can conceivably result in an output whose weight is equal to the free distance of a code of rate 1/2.

Bahl, L.↗
NASA NTRS1972

Performance evaluation of a class of systematic, rate (M-1)/M, convolutional codes

The implementation and performance evaluation are described for a class of rate (M-1)/M, systematic, convolutional codes being decoded with a simple majority logic decoder. The encoding logic appends one parity bit for each PCM telemetry word. It is shown that over the critical range of received PCM telemetry signal-to-noise ratios, this coding procedure produces a net coding gain of from 1.5 to 2.5 db relative to an equal power transmission of uncoded PCM telemetry. Being a low-redundancy systematic code, it is possible to process this data without convolutional decoding with a small rate loss penalty of about 0.5 db.

Greene, E. P.↗
NASA NTRS1974

Evaluation of three coding schemes designed for improved data communication

Three coding schemes designed for improved data communication are evaluated. Four block codes are evaluated relative to a quality function, which is a function of both the amount of data rejected and the error rate. The Viterbi maximum likelihood decoding algorithm as a decoding procedure is reviewed. This evaluation is obtained by simulating the system on a digital computer. Short constraint length rate 1/2 quick-look codes are studied, and their performance is compared to general nonsystematic codes.

Snelsire, R. W.↗
NASA NTRS1974

Optimum frame synchronization for biorthogonally coded data

Many recent American unmanned planetary probes have used biorthogonally coded spacecraft-to-earth telemetry links. An examination of the frame-synchronization (sync) techniques employed on these missions revealed that they were not specifically designed for coded data. This led to a consideration of the optimum frame-sync problem for biorthogonally coded data received over the additive white Gaussian noise (AWGN) channel and decoded prior to sync acquisition. A frame-sync algorithm for biorthogonally coded data based on a super-symbol distance rule is proposed, along with a corresponding selection criterion for the sync sequence. It is argued heuristically that this approach is optimum with regard to minimizing the probability of false synchronization.

Levitt, B. K.↗