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Massively Parallel Tensor Network State Algorithms on Hybrid CPU-GPU Based Architectures
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gRASPA
GPU Monte Carlo Simulation Code with a taste of RASPA We present enhancements in Monte Carlo simulation speed and functionality within an open-source code, gRASPA, which uses graphical processing units (GPUs) to achieve significant performance improvements compared to serial, CPU implementations of Monte Carlo. The code supports a wide range of Monte Carlo simulations, including canonical ensemble (NVT), grand canonical, NVT Gibbs, Widom test particle insertions, and continuous-fractional component Monte Carlo. Implementation of grand canonical transition matrix Monte Carlo (GC-TMMC) and a novel feature to allow different moves for the different components of metal-organic framework (MOF) structures exemplify the capabilities of gRASPA for precise free energy calculations and enhanced adsorption studies, respectively. The introduction of a High-Throughput Computing (HTC) mode permits many Monte Carlo simulations on a single GPU device for accelerated materials discovery. The code can incorporate machine learning (ML) potentials. The open-source nature of gRASPA promotes reproducibility and openness in science, and users may add features to the code and optimize it for their own purposes. The code is written in CUDA/C++ and SYCL/C++ to support different GPU vendors. The gRASPA code is publicly available at https://github.com/snurr-group/gRASPA.
An Algorithm for Atom-Centered Lossy Compression of the Atomic Orbital Basis in Density Functional Theory Calculations
Large atomic-orbital (AO) basis sets of at least triple and preferably quadruple-ζ (QZ) size are required to adequately converge Kohn–Sham density functional theory (DFT) calculations toward the complete basis set limit. However, incrementing the cardinal number by one nearly doubles the AO basis dimension, and the computational cost scales as the cube of the AO dimension, so this is very computationally demanding. Here, in this work, we develop and test a threshold-based natural atomic orbital (NAO) scheme in which ϵ-NAOs are obtained as eigenfunctions of atomic blocks of the density matrix in a one-center orthogonalized representation. This enables compression of the AO basis that is optimal for a given threshold, 10 –ϵ , by discarding NAOs with occupation numbers below that threshold. Extensive pilot test calculations using the Hartree–Fock functional and taking the converged density matrix as input suggest that a threshold of 10 –5 can yield a compression factor (ratio of AO to compressed ϵ-NAO dimension) between 2.5 and 4.5 for the QZ pc-3 basis. The errors in relative energies are typically less than 0.1 kcal/mol when the compressed basis is used instead of the uncompressed basis. Between 10 and 100 times smaller errors (i.e., usually less than 0.01 kcal/mol) can be obtained with a threshold 10 –7 , while the compression factor is typically between 2 and 2.5.
Two Algorithms for Excited-State Quantum Solvers: Theory and Application to EOM-UCCSD
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Implementation of McMurchie–Davidson Algorithm for Gaussian AO Integrals Suited for SIMD Processors
We report an implementation of the McMurchie− Davidson evaluation scheme for 1- and 2-particle Gaussian AO integrals designed for processors with Single Instruction Multiple Data (SIMD) instruction sets. Like in our recent MD implementation for graphical processing units (GPUs) [Asadchev, A.; Valeev, E. F.. J. Chem. Phys. 2024, 160, 244109.], variable-sized batches of shellsets of integrals are evaluated at a time. By optimizing for the floating point instruction throughput rather than minimizing the number of operations, this approach achieves up to 50% of the theoretical hardware peak FP64 performance for many common SIMD-equipped platforms (AVX2, AVX512, NEON), which translates to speedups of up to 30 over the state-of-the-art one-shellset-at-a-time implementation of Obara−Saika-type schemes in Libint for a variety of primitive and contracted integrals. As with our previous work, we rely on the standard C++ programming language such as the std::simd standard library feature to be included in the 2026 ISO C++ standard without any explicit code generation to keep the code base small and portable. The implementation is part of the open source LibintX library freely available at https://github.com/ValeevGroup/libintx.
Modeling Metallic Halide Local Structures in Salt Melts Using a Genetic Algorithm
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ClipsMS: An Algorithm for Analyzing Internal Fragments Resulting from Top-Down Mass Spectrometry
Not provided.
Optimization of Thermal Conductance at Interfaces Using Machine Learning Algorithms
We report optimization of thermal transport across the interface of two different materials is critical to micro-/nanoscale electronic, photonic, and phononic devices. Although several examples of compositional intermixing at the interfaces having a positive effect on interfacial thermal conductance (ITC) have been reported, an optimum arrangement has not yet been determined because of the large number of potential atomic configurations and the significant computational cost of evaluation. On the other hand, computation-driven materials design efforts are rising in popularity and importance. Yet, the scalability and transferability of machine learning models remain as challenges in creating a complete pipeline for the simulation and analysis of large molecular systems. In this work we present a scalable Bayesian optimization framework, which leverages dynamic spawning of jobs through the Message Passing Interface (MPI) to run multiple parallel molecular dynamics simulations within a parent MPI job to optimize heat transfer at the silicon and aluminum (Si/Al) interface. We found a maximum of 50% increase in the ITC when introducing a two-layer intermixed region that consists of a higher percentage of Si. Because of the random nature of the intermixing, the magnitude of increase in the ITC varies. We observed that both homogeneity/heterogeneity of the intermixing and the intrinsic stochastic nature of molecular dynamics simulations account for the variance in ITC.
Pursuit of the Ultimate Regression Model for Samarium(III), Europium(III), and LiCl Using Laser-Induced Fluorescence, Design of Experiments, and a Genetic Algorithm for Feature Selection
Not Available
Characterizing Wet Season Precipitation in the Central Amazon Using a Mesoscale Convective System Tracking Algorithm
To comprehensively characterize convective precipitation in the central Amazon region, we utilize the Python FLEXible object TRacKeR (PyFLEXTRKR) to track mesoscale convective systems (MCSs) observed through satellite measurements and simulated by the Weather Research and Forecasting model at a convection-permitting resolution. This study spans a 2-month period during the wet seasons of 2014 and 2015. We observe a strong correlation between the MCS track density and accumulated precipitation in the Amazon basin. Key factors contributing to precipitation, such as MCS properties (number, size, rainfall intensity, and movement), are thoroughly examined. Our analysis reveals that while the overall model produces fewer MCSs with smaller mean sizes compared to observations, it tends to overpredict total precipitation due to excessive rainfall intensity for heavy rainfall events (≥10 mm hr –1 ). These biases in simulated MCS properties could vary with the constraints on the convective background environment. Moreover, while the wet bias from heavy (convective) rainfall outweighs the dry bias in light (stratiform) rainfall, the latter can be crucial, particularly when MCS cloud cover is significantly underestimated. A case study for 1 April 2014 highlights the influence of environmental conditions on the MCS lifecycle and identifies an unrealistic model representation in both stratiform and convective precipitation features.
Response of Atmospheric River Width and Intensity to Aquaplanet Warming: A Detection Algorithm‐ and Background Moisture‐Independent Approach
The width of an atmospheric river (AR) is an important parameter when evaluating its impact. Although previous research suggests ARs will widen with global warming, a precise response has been muddled by the large sensitivity of width to a diverse set of AR detection techniques (ARDTs). Here, we propose a methodology that removes the influence of the ARDT by modeling AR‐integrated vapor transport (IVT) profiles as idealized exponential curves with free parameters given by background IVT, intensity above background IVT, and profile width. Notably, our definition for AR profile width does not include any explicit numerical thresholds, relative or absolute, for IVT. We apply our approach to a series of idealized aquaplanet experiments, first with a baseline sea surface temperature (SST) distribution, and then with +2K, +4K, and +6K uniform warming, so as to determine the contributions of each free parameter to AR width. We also apply our approach to high‐resolution atmosphere‐only models forced with SSTs modified to preserve historical variability but following projected warming over 2016–2050. Our results show that contributions to impacts‐relevant AR widening comes primarily from enhancements in background IVT and AR intensity, as opposed to from dynamic width changes.