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At least 1,189 records · Page 66

Genome-Scale Metabolic Modeling Enables In-Depth Understanding of Big Data

Genome-scale metabolic models (GEMs) enable the mathematical simulation of the metabolism of archaea, bacteria, and eukaryotic organisms. GEMs quantitatively define a relationship between genotype and phenotype by contextualizing different types of Big Data (e.g., genomics, metabolomics, and transcriptomics). In this review, we analyze the available Big Data useful for metabolic modeling and compile the available GEM reconstruction tools that integrate Big Data. We also discuss recent applications in industry and research that include predicting phenotypes, elucidating metabolic pathways, producing industry-relevant chemicals, identifying drug targets, and generating knowledge to better understand host-associated diseases. In addition to the up-to-date review of GEMs currently available, we assessed a plethora of tools for developing new GEMs that include macromolecular expression and dynamic resolution. Finally, we provide a perspective in emerging areas, such as annotation, data managing, and machine learning, in which GEMs will play a key role in the further utilization of Big Data.

59 BASIC BIOLOGICAL SCIENCES↗

Transmission Bearing Damage Detection Using Decision Fusion Analysis

A diagnostic tool was developed for detecting fatigue damage to rolling element bearings in an OH-58 main rotor transmission. Two different monitoring technologies, oil debris analysis and vibration, were integrated using data fusion into a health monitoring system for detecting bearing surface fatigue pitting damage. This integrated system showed improved detection and decision-making capabilities as compared to using individual monitoring technologies. This diagnostic tool was evaluated by collecting vibration and oil debris data from tests performed in the NASA Glenn 500 hp Helicopter Transmission Test Stand. Data was collected during experiments performed in this test rig when two unanticipated bearing failures occurred. Results show that combining the vibration and oil debris measurement technologies improves the detection of pitting damage on spiral bevel gears duplex ball bearings and spiral bevel pinion triplex ball bearings in a main rotor transmission.

Dempsey, Paula J.↗

Instrumentation, control and data management for the MIST (Modular Integrated Utility System) Facility

An appendix providing the technical data required for computerized control and/or monitoring of selected MIST subsystems is presented. Specific computerized functions to be performed are as follows: (1) Control of the MIST heating load simulator and monitoring of the diesel engine generators' cooling system; (2) Control of the MIST heating load simulator and MIST heating subsystem including the heating load simulator; and (3) Control of the MIST air conditioning load simulator subsystem and the MIST air conditioning subsystem, including cold thermal storage and condenser water flows.

Celino, V. A.↗

Tutorial: Lessons Learned for Behavior Analysts from Data Scientists

Big data is a computing term used to refer to large and complex data sets, typically consisting of terabytes or more of diverse data that is produced rapidly. The analysis of such complex data sets requires advanced analysis techniques with the capacity to identify patterns and abstract meanings from the vast data. The field of data science combines computer science with mathematics/statistics and leverages artificial intelligence, in particular machine learning, to analyze big data. This field holds great promise for behavior analysis, where both clinical and research studies produce large volumes of diverse data at a rapid pace (i.e., big data). This article presents basic lessons for the behavior analytic researchers and clinicians regarding integration of data science into the field of behavior analysis. We provide guidance on how to collect, protect, and process the data, while highlighting the importance of collaborating with data scientists to select a proper machine learning model that aligns with the project goals and develop models with input from human experts. Here, we hope this serves as a guide to support the behavior analysts interested in the field of data science to advance their practice or research, and helps them avoid some common pitfalls.

42 ENGINEERING↗

Final Design for Thermal/Epithermal eXperiments using High 240 Pu Content Plutonium/Aluminum Zero Power Research Reactor Plates with Polyethylene Moderator (IER 520 Final Design CED-2 Report)

The US Department of Energy Nuclear Criticality Safety Program (NCSP) convened a multinational Thermal Epithermal eXperiments (TEX) meeting in July of 2011 to discuss the data and experimental needs of criticality safety practitioners. The number one and two priority integral experiment data needs were for 239 Pu and 240 Pu, with special emphasis on cross section performance in the intermediate energy range (from 0.625 eV to 100 keV). LLNL measured five critical configurations with LANL for the plutonium test bed (IER-184) and published the experiments as International Criticality Safety Benchmark Evaluation Project evaluation PUMET-MIXED-002. Modeling of the benchmark configurations using ENDF/B-VIII.0 nuclear data showed significant overprediction of reactivity for configurations that had a large percentage of fissions in the intermediate energy regime. This report documents a variation on the TEX plutonium test bed to provide a test of 240 Pu cross sections, with sensitivity of the configuration to 240 Pu radiative capture and fission cross sections a priority for the design.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Escort - A data acquisition and display system to support research testing

A combination of a central minicomputer and test-site microcomputers has been adopted to provide on-line data acquisition and display service for a large number of different research programs. By integrating the data acquisition and recording functions in the minicomputer/microcomputer system, rapidly updated displays of selected data in terms of engineering units may be obtained. The system described here is primarily designed for steady-state test conditions, but may also provide data on slow transients associated with changing experimental conditions. Application of the system to full-scale jet engine tests, ion thruster assessments and anechoic chamber analyses are mentioned.

Miller, R. L.↗

An optimal GPS data processing technique for precise positioning

A mathematical formula to optimally combine dual-frequency GPS pseudorange and carrier phase (integrated Doppler) data streams into a single data stream is derived in closed form. The data combination reduces the data volume and computing time in the filtering process for parameter estimation by a factor of 4 while preserving the full data strength for precise positioning. The resulting single data stream is that of carrier phase measurements with both data noise and bias uncertainty strictly defined. With this mathematical formula the single stream of optimally combined GPS measurements can be efficiently formed by simple numerical calculations. Carrier phase ambiguity resolution, when feasible, is strengthened due to the preserved full data strength with the optimally combined data and the resulting longer wavelength for the ambiguity to be resolved.

Wu, Sien-Chong↗

Towards an intercomparison of automated registration algorithms for multiple source remote sensing data

The first step in the integration of multiple data is registration, either relative image-to-image registration or absolute geo-registration, to a map or a fixed coordinate system. As the need for automating registration techniques is recognized, we feel that there is a need to survey all the registration methods which may be applicable to Earth and space science problems and to evaluate their performances on a large variety of existing remote sensing data as well as on simulated data of soon-to-be-flown instruments. In this paper we will describe: 1) the operational toolbox which we are developing and which will consist in some of the most important registration techniques; and 2) the quantitative intercomparison of the different methods, which will allow a user to select the desired registration technique based on this evaluation and the visualization of the registration results.

LeMoigne, Jacqueline↗

Spiral Bevel Gear Damage Detection Using Decision Fusion Analysis

A diagnostic tool for detecting damage to spiral bevel gears was developed. Two different monitoring technologies, oil debris analysis and vibration, were integrated using data fusion into a health monitoring system for detecting surface fatigue pitting damage on gears. This integrated system showed improved detection and decision-making capabilities as compared to using individual monitoring technologies. This diagnostic tool was evaluated by collecting vibration and oil debris data from fatigue tests performed in the NASA Glenn Spiral Bevel Gear Fatigue Rigs. Data was collected during experiments performed in this test rig when pitting damage occurred. Results show that combining the vibration and oil debris measurement technologies improves the detection of pitting damage on spiral bevel gears.

Dempsey, Paula J.↗

Simultaneous Red - Blue Lidar and Airborne Impactor Measurements

Simultaneous two-color (0.6943 micrometers and 0.3472 micrometers) LIDAR measurements were made in the troposphere and lower stratosphere over Boulder, Colorado during March 1973. In addition, on the evening of March 26, airborne single-stage impactor measurements were made at four altitudes-- 10,500, 25,000, 33,000 and 43,000 feet MSL. These data were integrated at constant altitude for 15,45, 45, and 60 minutes respectively. The LIDAR data were taken with Langley's 48" LIDAR using a dichroic beamsplitter to separate the return at 0.6943 micrometers and 0.3472 micrometers. The analog waveforms for both colors were digitized simultaneously; one on an NCAR data acquisition system and the other on the 48" Langley data acquisition system. A discussion of the preliminary results from these measurements will be presented.

McCormick, M. P.↗

How to Create a 3D Model from Scanned Data in 5 Easy Steps

Additive manufacturing is a cost effective way to generate copies of damaged parts for demonstrations. Integrating scanned data of a damaged area into an existing model may be challenging. However, using the relatively inexpensive Nettfab software (from one can generate a "watertight" model that is easy to print.

Hagen, Richard↗

Overview of SAND-E: Semi-Autonomous Navigation for Detrital Environments

Rovers are the state of the art for the exploration and detection of past habitability and life on other worlds. One of the most basic functions of a rover is terrain navigation. Information collected by the rover is used autonomously to mitigate terrain hazards such large rocks, while humans qualitatively assess hazardous geologic terrain such as soil type and degree of rock cover. Planetary scientists use the same information to select targets such as drill sites, and for basic scientific analysis such as characterization of rock outcrops. Although the data is complementary, data from terrain analysis for navigation and terrain analysis for scientific investigations are poorly integrated. The lack of integration creates science and operation inefficiencies that limit exploration of habitable environments. As new modes of exploration come online, such as unmanned aerial systems (UAS) (e.g., the Mars Helicopter Scout and Titan Dragonfly), a need exists to integrate terrain data and science analysis to improve operational and scientific outcomes during exploration. We present an overview of a project aimed at evaluating the effectiveness and capability rover and UAS-based semi-automated terrain analysis using the Automated Soil Assessment Systems (ASAS) developed by Mission Control Space Services for navigating, selecting targets for sampling, and characterizing mafic detrital sediments along glacio-fluvial-aeolian sand transport pathways in Iceland. We describe recent advances in automated terrain analysis in sandy environments and scientific uses of terrain assessment from sandy environments. We assess fluvial and aeolian terrains in Iceland and show how terrain analysis data can inform scientific characterization of these environments.

Ewing, Ryan C.↗

Simulated NASA Satellite Data Products for the NOAA Integrated Coral Reef Observation Network/Coral Reef Early Warning System

This RPC (Rapid Prototyping Capability) experiment will demonstrate the use of VIIRS (Visible/Infrared Imager/Radiometer Suite) and LDCM (Landsat Data Continuity Mission) sensor data as significant input to the NOAA (National Oceanic and Atmospheric Administration) ICON/ CREWS (Integrated Coral Reef Observation System/Coral Reef Early Warning System). The project affects the Coastal Management Program Element of the Applied Sciences Program.

Estep, Leland↗

Overview of System Integration Analysis Activities for Integrated Waste Management

Spent nuclear fuel (SNF) generated by the current fleet of commercial nuclear reactors is being stored at the reactor sites in spent fuel pools (SFPs) and in dry independent spent fuel storage installations (ISFSIs). The US Department of Energy Office of Nuclear Energy (DOE-NE) is developing an Integrated Waste Management Program (IWMP) comprising a suite of options and supporting analyses to enable future informed choices. The IWMP is organized into the following five major areas: 1) Consent-Based Siting, 2) IWM Facilities and Equipment Concepts and Development, 3) Transportation Capability Analysis and Support, 4) Information Technology Solutions and Support, and 5) System Integration Analysis and Support. This paper discusses the activities ongoing in the IWMP System Integration Analysis and Support area. Two main areas of research in system integration are data and tools development, as well as system analysis assessments. One of the tools being developed in the system integration area is the Used Nuclear Fuel-Storage, Transportation & Disposal Analysis Resource and Data System (UNF-ST&DARDS) tool. It is being developed as a foundational resource for DOE-NE to manage SNF data, along with several compatible analysis tools for time-dependent characterization of SNF and related systems. UNF-ST&DARDS has the unparalleled ability to track SNF through the entire back end of the fuel cycle—from the time the fuel is discharged from a reactor through its disposal in a geological repository. UNF ST&DARDS interfaces with the SCALE code system for nuclear analysis and COBRA-SFS for thermal analysis. Another main tool being developed is the Next Generation System Analysis Model (NGSAM). NGSAM is an agent-based simulation software tool expressly designed to be capable of modeling the waste management system. NGSAM has been developed to enable informed decision-making by providing the capability of analyzing various potential system options for the management of SNF and HLW. Using NGSAM, system architecture analyses are being conducted to support the future deployment of a comprehensive nuclear waste management system that considers all major back-end aspects of the nuclear fuel cycle (i.e., transportation, storage, and disposal). System analysis assessments may investigate the implications of various strategies such as different acceptance rates, acceptance queues, facility capacities and options, standardized canisters, and different assumed system operation start dates. Recently, some system analysis effort has begun to look at how the waste management system might operate for advanced reactor fuel cycles.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Software Engineering Support of the Third Round of Scientific Grand Challenge Investigations: An Earth Modeling System Software Framework Strawman Design that Integrates Cactus and UCLA/UCB Distributed Data Broker

One of the most significant challenges in large-scale climate modeling, as well as in high-performance computing in other scientific fields, is that of effectively integrating many software models from multiple contributors. A software framework facilitates the integration task. both in the development and runtime stages of the simulation. Effective software frameworks reduce the programming burden for the investigators, freeing them to focus more on the science and less on the parallel communication implementation, while maintaining high performance across numerous supercomputer and workstation architectures. This document proposes a strawman framework design for the climate community based on the integration of Cactus, from the relativistic physics community, and UCLA/UCB Distributed Data Broker (DDB) from the climate community. This design is the result of an extensive survey of climate models and frameworks in the climate community as well as frameworks from many other scientific communities. The design addresses fundamental development and runtime needs using Cactus, a framework with interfaces for FORTRAN and C-based languages, and high-performance model communication needs using DDB. This document also specifically explores object-oriented design issues in the context of climate modeling as well as climate modeling issues in terms of object-oriented design.

Talbot, Bryan↗

Investigating the impacts of solid phase extraction on dissolved organic matter optical signatures and the pairing with high‐resolution mass spectrometry data across a freshwater stream network

Abstract Advancing our understanding of dissolved organic matter (DOM) chemistry in aquatic systems necessitates the integration of data streams from multiple analytical platforms. Some measurements require pretreatment with solid phase extraction (SPE), while others are performed directly on whole water samples. Evidence has suggested that SPE will be biased against select DOM fractions, leading to concerns over the ability to establish data linkages across platforms with variable needs for SPE pretreatment, such as those from optical measurements and those that provide high‐resolution molecular information. Here, we directly addressed this concern by assessing the impact of SPE on DOM optical properties through excitation–emission matrices with parallel factor analysis (PARAFAC) for 47 samples across a stream network within a single watershed reflective of variable DOM sources. PARAFAC data was further paired with molecular information obtained by Fourier transform ion cyclotron resonance mass spectrometry (FTICR‐MS). A comparison of PARAFAC models first revealed no systematic qualitative differences in major components between whole water DOM and DOM isolated by SPE (SPE‐DOM); however, quantitative biases against select components were observed. Further linkages with FTICR‐MS data revealed that the molecular fingerprint associated with each PARAFAC component was consistent between the whole water DOM and SPE‐DOM. Our results suggest that bulk scale linkages across these analytical platforms could be inferred irrespective of the observed quantitative biases resulting from SPE for samples within this example watershed. This work represents a key step toward the systematic evaluation of linkages between optical and high‐resolution mass spectrometry datasets in freshwater lotic environments.

59 BASIC BIOLOGICAL SCIENCES↗

A preprocessor for the Urbana coherent-scatter radar

The design, interfacing, testing, and operation of a preprocessor to increase the altitude and temporal resolution of the present coherent-scatter system are described. This system upgrade requires an increase in the data collection rate. Replacing the present, relatively slow, ADC with two high speed ADCs achieves the increased echo sampling rate desired. To stay within the capabilities of the main computer's I/O and processing rate the data must be reduced before transfer to the main computer. Thus the preprocessor also coherently integrates the data before transfer.

Zendt, F. T.↗

Total-dose radiation effects data for semiconductor devices: 1985 supplement, volume 1

Steady-state, total-dose radiation test data are provided, in graphic format, for use by electronic designers and other personnel using semiconductor devices in a radiation environment. The data were generated by JPL for various NASA space programs. The document is in two volumes: Volume 1 provides data on diodes, bipolar transistors, field effect transistors, and miscellaneous semiconductor types, and Volume 2 provides total-dose radiation test data on integrated circuits. Volume 1 of this 1985 Supplement contains new total-dose radiation test data generated since the August 1, 1981 release date of the original Volume 1. Publication of Volume 2 of the 1985 Supplement will follow that of Volume 1 by approximately three months.

Martin, K. E.↗