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At least 1,189 records · Page 66

GeneLab: Current and Future Omics Data Integration Between Space Biology and HRP

For the past five years, the Biological and Physical Sciences Division has pioneered Open Science in Space Biology by funding the NASA GeneLab project. Along with the Ames Life Sciences Data Archive, GeneLab has quickly become the world leader in archiving and scientifically curating spaceflight and spaceflight relevant multi-omics data. Specifically, the GeneLab Data System has become a full enterprise solution providing advanced mining capabilities, several application programming interfaces for data federation and machine learning approaches, and delivering to the world an analytical and visualization platform which has enabled collaboration within the scientific community. Over the past three years, large meta-analysis and modeling studies have been published by the GeneLab Analysis Working Groups (AWGs), which are comprised of ~200 volunteer scientists. One natural extension of GeneLab data reuse has recently turned towards linking animal data with human data, which is the next necessary step to further validate animal models for inferring biological risks to humans conducting LEO, lunar or Martian missions. As such, data from the Human Research Program are an essential component of GeneLab and ALSDA. At the moment, simulated space radiation experiments conducted at Brookhaven National Laboratory make the most of HRP GeneLab data, and the scientific community has been eager to also link their animal spaceflight results to actual Astronaut data and human analog data. We will discuss further the current status of knowledge and future approaches to accelerate our basics understanding of the impact of space stressors on humans using latest omics technology.

omics↗

Addendum to ICSBEP Logbooks 12r, 13r, 14r and 15r for Polyethylene and Graphite Reflected HEU Metal Critical Experiments

This report documents the experimenters’ data sheets that were recently (2023) discovered for critical experiments with highly enriched uranium metal with polyethylene and graphite reflectors. These data sheets were produced at the time of the measurements, when the dimensional inspection reports for the polyethylene and graphite were available. However, at this writing, those inspection reports are not available but may be in unmarked storage for the Y-12 National Security Complex. However, the data sheets presented herein contain sketches of the experimental configurations and other additional information that is not in the logbooks, such as dimensions and masses of the graphite measurements. This report reproduces the experimental data sheets that complement the logbooks. Some of the data on these sheets and the logbooks can be used to infer the dimensions and masses that are not documented. Some obvious mistakes in the logbook and data sheets have been corrected. In the reproduced data sheets, some of the information is not clearly visible: some information, such as average values, can be obtained from other data in the sheets or logbook. This report should be sent to the International Criticality Safety Benchmark Program at Idaho National Laboratory to complement the existing Oak Ridge Critical Facility logbooks there.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Altimeter observations of the Peru-Chile countercurrent

Data from Geosat and TOPEX altimeters are used to infer the structure of the Peru-Chile Countercurrent, a jet that flows from at least as far north as 10 deg S (historical data suggest 7 deg S) to 35 deg - 40 deg S, maintaining its position between approximately 100-300 km offshore. Although the annual mean current cannot be determined from altimeter observations, the nearly antisymmetric patterns in spring and fall, combined with historical observations, suggest that the countercurrent is poleward at most times and is maximum in spring and minimum in fall. Previous studies have linked the offshore countercurrent at 7 deg S to the Equatorial Undercurrent west of the Galapagos Islands, suggesting that the countercurrent is part of a continuous flow that extends from the western equatorial Pacific to the region off Chile between 35 deg - 40 deg S.

Strub, P. Ted↗

Informing the planning of rotating power outages in heat waves through data analytics of connected smart thermostats for residential buildings

Abstract With climate change, heat waves have become more frequent and intense. Rotating power outages happen when the power supply is unable to meet the cooling demand increase resulting from extreme high temperatures. Power outages during heat waves expose residents to high risks of overheating. In this study, we propose a novel data-driven inverse modelling approach to inform decision makers and grid operators on planning rotating power outages. We first infer the building thermal characteristics using the connected smart thermostat data, and used the estimated thermal dynamics to simulate the thermal resilience during a heat wave event. Our proposed method was tested for the California power outage in August 2020 by using the open source Ecobee Donate Your Data dataset. We found in California the power outage should not last more than two hours during heat waves to avoid overheating risks. Informing the residents in advance so they can prepare for it through pre-cooling is a simple but effective strategy to expand the acceptable power outage duration. In addition to assisting power outage planning, the proposed method can be used for other applications, such as to evaluate a building energy efficiency policy, to examine fuel poverty, and to estimate the load shifting potential of building stocks.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Solar-Geophysical Data Number 496, February 1986. Part 1: (Prompt reports). Data for January 1986,December 1985 and late data

Solar-Geophysical Data Number 498, February 1986, Part 1 (Prompt Reports), Data for January 1986, December 1985 and Late Data contains the following:detailed index for 1985-86; data for January 1986--(IUWDS alert periods (advanced and worldwide), Solar activity indices, Solar flares, Solar radio emission, Vostok inferred interplanetary magnetic field polarity, Stanford mean solar magnetic field); data for December 1985--(Solar active regions, Sudden ionospheric disturbances, Solar radio spectral observations, Cosmic ray measurements by neutron monitor, Geomagnetic indices, Radio propagation indices); late data--(Solar radio emission Nancay interferometric chart December 1985, Solar radio spectral observations Culgoora May 1985, Geomagnetic indices sudden commencements November 1985, Calcium plage data).

Coffey, H. E.↗

Solar-geophysical data number 499, March 1986. Part 1: (Prompt reports). Data for February 1986, January 1986 and late data

Solar-Geophysical Data Number 499, March 1986, Part 1 (Prompt Reports); Data for February 1986, January 1986 and Late Data, contains the following: Detailed index for 1985 to 1986; Data for February 1986--(IUWDS alert periods (Advance and worldwide), Solar activity indices, Solar flares, Solar radio emission, Vostok inferred interplanetary magnetic field polarity, Stanford mean solar magnetic field); data for January 1986--(Solar active regions, Sudden ionospheric disturbances, Solar radio spectral observations, Cosmic ray measurements by neutron monitor, Geomagnetic indices, Radio propagation indices); Late data-(Solar active regions, Solar radio spectral observations Culgoora, Cosmic ray measurements by neutron monitor, Calcium plage data).

Coffey, H. E.↗

Miniature Beryllium Split-Hopkinson Pressure Bars for Extending the Range of Achievable Strain-Rates

Conventional Split Hopkinson Pressure Bars (SHPB) or “Kolsky” bars are often used for determining the high-rate compressive yield and failure strength of materials. However, for experiments generating very high strain-rates (>10 3 /s) miniaturization of the setup is often required for minimizing the effects of elastic wave dispersion in order to enable the inference of decreasingly short loading events from the data. Miniature aluminum and steel bars are often sufficient for meeting these requirements. However, for high enough strain-rates, miniaturization of steel or aluminum Kolsky bars may require prohibitively small diameter bars and test specimens that could become inappropriate for inferring representative properties of materials with large grain size relative to the test specimen size. The use of a beryllium Kolsky bar setup is expected to enable high rates to be accessible with larger diameter bars/specimen combinations due to the inherent physical properties of beryllium, which are expected to minimize the effects of elastic wave dispersion. For this reason, a series of beryllium Kolsky bars have been developed, and, in this paper, the dispersion characteristics of these bars are measured and compare the data with those of similarly sized 7075-T6 aluminum and C350 maraging steel. The results, which agree well with the theory, show no appreciable frequency dependence of the elastic wavespeed in the data from the beryllium bars, demonstrating its advantage over aluminum and steel in application to Kolsky bars.

36 MATERIALS SCIENCE↗

Identifying crack tip position and stress intensity factors from displacement data

Fracture prognosis and characterization efforts require knowledge of crack tip position and the Stress Intensity Factors (SIFs) acting in the vicinity of the crack. Here, in this work, we present an efficient numerical approach to infer both of these characteristics under a consistent theoretical framework from noisy, unstructured displacement data. The novel approach utilizes the separability of the asymptotic linear elastic fracture mechanics fields to expedite the search for crack tip position and is particularly useful for noisy displacement data. The manuscript begins with an assessment of the importance of accurately locating crack tip position when quantifying the SIFs from displacement data. Next, the proposed separability approach for quickly inferring crack tip position is introduced. Comparing to the widely used displacement correlation approach, the performance of the separability approach is assessed. Cases involving both noisy data and systematic deviation from the asymptotic linear elastic fracture mechanics model are considered, e.g. inelastic material behavior and finite geometries. An open source python implementation of the proposed approach is available for use by those doing field and laboratory work involving digital image correlation and simulations, e.g. finite element, discrete element, molecular dynamics and peridynamics, where the crack tip position is not explicitly defined.

36 MATERIALS SCIENCE↗

Verification, Validation, and Calibration Through a Causal Lens

While typical validation and verification approaches focus on identifying the associations between data elements using statistical and machine learning methods, the novel methods in this paper focus instead on identifying causal relationships between data elements. Statistical and machine-learning-based approaches are strictly data-driven, meaning that they provide quantitative comparison measures between data sets without explicitly considering the hypotheses behind them. This can lead to the erroneous conclusion that, if two data sets are close enough, the models that generated them are similar. In addition, when experimental and simulated data differ to an extent that fails to meet the acceptance criteria, calibration techniques are used to tweak simulation model parameters to reduce the gap between the two types of data. This produces the false expectation that a simulation model will match reality. The methods presented in this paper move away from these strictly data-driven methods for validation and calibration toward more robust, model-driven methods based on causal inference. Causal inference aims to identify the possible mechanisms that might have generated data. Thus, this analysis targets the prediction of the effects when one (or more) of the identified mechanisms are altered. There are many approaches to identify, quantify, and illustrate causal relationships. For the scope of this paper, directed graphs are employed as causal models. If the directed graph lacks cycles, it is known as a directed acyclic graph. A node in such a graph represents an observed data element while a directed edge connecting two nodes represents a causal relationship between two variables. The developed causal methods are designed to extract causal models from simulation models and experimental data. Causal models capture the causal relationships between data elements (e.g., simulated and experimental data). In this context, validation and verification are performed by comparing causal models. The proposed approach does not only inform system analysts on how a simulation model matches real-world data, but also identifies elements of the simulation model that should be revised when discrepancies between simulation and experimental data are observed. Through these causal methods, analysts can identify the portion of the model equation(s) that are behind an edge connecting two variables. Hence, once the structural differences between causal models have been determined, model calibration can occur by changing only those model parameters that impact the identified causal relationships.

97 MATHEMATICS AND COMPUTING↗

The Gaia DR2 parallax zero-point: hierarchical modelling of red clump stars

ABSTRACT The systematic offset of Gaia parallaxes has been widely reported with Gaia’s second data release, and it is expected to persist in future Gaia data. In order to use Gaia parallaxes to infer distances to high precision, we develop a hierarchical probabilistic model to determine the Gaia parallax zero-point offset along with the calibration of an empirical model for luminosity of red clump stars by combining astrometric and photometric measurements. Using a cross-matched sample of red clump stars from the Apache Point Observatory Galactic Evolution Experiment and Gaia Data Release 2 (DR2), we report the parallax zero-point offset in DR2 to be $\varpi _0 = -48 \pm 1\,\mu \text{as}$. We infer the red clump absolute magnitude to be −1.622 ± 0.004 in Ks, 0.435 ± 0.004 in G, −1.019 ± 0.004 in J, and −1.516 ± 0.004 in H. The intrinsic scatter of the red clump is ∼0.09 mag in J, H, and Ks, or ∼ 0.12 mag in G. We tailor our models to accommodate more complex analyses such as investigating the variations of the parallax zero-point with each source’s observed magnitude, observed colour, and sky position. In particular, we find fluctuations of the zero-point across the sky to be of order or less than a few 10s of $\mu \text{as}$.

Chan, Victor C.↗

Magnetic canopies and models of the solar chromosphere

Magnetic canopies are the topologies formed by magnetic field lines as they spread from compact, nearly vertical concentrations of flux in the low photosphere into the large-scale organization of the corona and heliosphere. Analytical techniques for inferring the base-heights of canopies from magnetographic data are reviewed together with observational evidence that much of the sun is covered by canopies which lie two or more pressure scale heights below the level which is traditionally inferred from thin flux tube models. Implications of these results for modeling the structure and energetics of the chromosphere are discussed, and it is argued that future models should be based upon both spectroscopic and polarimetric data. Recent improvements in magnetostatic model atmospheres are reviewed, and new observational data, including C IV Doppler-grams from the Ultraviolet Spectrometer and Polarimeter on the Solar Maximum Mission, are considered. Directions for future research in MHD modeling of canopies, in simulating spectrographic and polarimetric data from such models, and in observational programs are discussed.

Jones, H. P.↗

Classification and regression models of audio and vibration signals for machine state monitoring in precision machining systems

Here we present a data-driven method for monitoring machine status in manufacturing processes. Audio and vibration data from precision machining are used for inference in two operating scenarios: (a) variable machine health states (anomaly detection); and (b) settings of machine operation (state estimation). Audio and vibration signals are first processed through Fast Fourier Transform and Principal Component Analysis to extract transformed and informative features. These features are then used in the training of classification and regression models for machine state monitoring. Specifically, three classifiers (K-nearest neighbors, convolutional neural networks and support vector machines) and two regressors (support vector regression and neural network regression) were explored, in terms of their accuracy in machine state prediction. It is shown that the audio and vibration signals are sufficiently rich in information about the machine that 100% state classification accuracy could be accomplished. Data fusion was also explored, showing overall superior accuracy of data-driven regression models.

42 ENGINEERING↗

Towards an astronomical foundation model for stars with a transformer-based model

ABSTRACT Rapid strides are currently being made in the field of artificial intelligence using transformer-based models like Large Language Models (LLMs). The potential of these methods for creating a single, large, versatile model in astronomy has not yet been explored. In this work, we propose a framework for data-driven astronomy that uses the same core techniques and architecture as used by LLMs. Using a variety of observations and labels of stars as an example, we build a transformer-based model and train it in a self-supervised manner with cross-survey data sets to perform a variety of inference tasks. In particular, we demonstrate that a single model can perform both discriminative and generative tasks even if the model was not trained or fine-tuned to do any specific task. For example, on the discriminative task of deriving stellar parameters from Gaia XP spectra, we achieve an accuracy of 47 K in Teff, 0.11 dex in log g, and 0.07 dex in [M/H], outperforming an expert XGBoost model in the same setting. But the same model can also generate XP spectra from stellar parameters, inpaint unobserved spectral regions, extract empirical stellar loci, and even determine the interstellar extinction curve. Our framework demonstrates that building and training a single foundation model without fine-tuning using data and parameters from multiple surveys to predict unmeasured observations and parameters is well within reach. Such ‘Large Astronomy Models’ trained on large quantities of observational data will play a large role in the analysis of current and future large surveys.

Leung, Henry W. (ORCID:0000000200362752)↗

Understanding capacity fade in organic redox-flow batteries by combining spectroscopy with statistical inference techniques

Organic redox-active molecules are attractive as redox-flow battery (RFB) reactants because of their low anticipated costs and widely tunable properties. Unfortunately, many lab-scale flow cells experience rapid material degradation (from chemical and electrochemical decay mechanisms) and capacity fade during cycling (>0.1%/day) hindering their commercial deployment. In this work, we combine ultraviolet-visible spectrophotometry and statistical inference techniques to elucidate the Michael attack decay mechanism for 4,5-dihydroxy-1,3-benzenedisulfonic acid (BQDS), a once-promising positive electrolyte reactant for aqueous organic redox-flow batteries. We use Bayesian inference and multivariate curve resolution on the spectroscopic data to derive uncertainty-quantified reaction orders and rates for Michael attack, estimate the spectra of intermediate species and establish a quantitative connection between molecular decay and capacity fade. Our work illustrates the promise of using statistical inference to elucidate chemical and electrochemical mechanisms of capacity fade in organic redox-flow battery together with uncertainty quantification, in flow cell-based electrochemical systems.

25 ENERGY STORAGE↗

Gaussian processes meet NeuralODEs: a Bayesian framework for learning the dynamics of partially observed systems from scarce and noisy data

We present a machine learning framework (GP-NODE) for Bayesian model discovery from partial, noisy and irregular observations of nonlinear dynamical systems. The proposed method takes advantage of differentiable programming to propagate gradient information through ordinary differential equation solvers and perform Bayesian inference with respect to unknown model parameters using Hamiltonian Monte Carlo sampling and Gaussian Process priors over the observed system states. This allows us to exploit temporal correlations in the observed data, and efficiently infer posterior distributions over plausible models with quantified uncertainty. The use of the Finnish Horseshoe as a sparsity-promoting prior for free model parameters also enables the discovery of parsimonious representations for the latent dynamics. A series of numerical studies is presented to demonstrate the effectiveness of the proposed GP-NODE method including predator–prey systems, systems biology and a 50-dimensional human motion dynamical system. This article is part of the theme issue ‘Data-driven prediction in dynamical systems’.

Science & Technology - Other Topics↗

Lift & Learn: Physics-informed machine learning for large-scale nonlinear dynamical systems

In this work, we present Lift & Learn, a physics-informed method for learning low-dimensional models for large-scale dynamical systems. The method exploits knowledge of a system’s governing equations to identify a coordinate transformation in which the system dynamics have quadratic structure. This transformation is called a lifting map because it often adds auxiliary variables to the system state. The lifting map is applied to data obtained by evaluating a model for the original nonlinear system. This lifted data is projected onto its leading principal components, and low-dimensional linear and quadratic matrix operators are fit to the lifted reduced data using a least-squares operator inference procedure. Analysis of our method shows that the Lift & Learn models are able to capture the system physics in the lifted coordinates at least as accurately as traditional intrusive model reduction approaches. This preservation of system physics makes the Lift & Learn models robust to changes in inputs. Numerical experiments on the FitzHugh–Nagumo neuron activation model and the compressible Euler equations demonstrate the generalizability of our model.

97 MATHEMATICS AND COMPUTING↗

A Bayesian approach to time-domain photonic Doppler velocimetry analysis

Photonic Doppler velocimetry (PDV) is an established technique for measuring the velocities of fast-moving surfaces in high-energy-density experiments. In the standard approach to PDV analysis, the short-time Fourier transform (STFT) is used to generate a spectrogram from which the velocity history of the target is inferred. The user chooses the form, duration, and separation of the window function. Here, in this study, we present a Bayesian approach to infer the velocity directly from the PDV oscilloscope trace, without using the spectrogram for analysis. This is clearly a difficult inference problem due to the highly periodic nature of the data, but we find that with carefully chosen prior distributions for the model parameters, we can accurately recover the injected velocity from synthetic data. We validate this method using PDV data collected at the STAR two-stage light gas gun at Sandia National Laboratories, recovering shock-front velocities in quartz that are consistent with those inferred using the STFT-based approach and are interpolated across regions of low signal-to-noise data. Although this method does not rely on the same user choices as the STFT, we caution that it can be prone to misspecification if the chosen model is not sufficient to capture the velocity behavior. Analysis using posterior predictive checks can be used to establish whether a better model is required, although more complex models come with additional computational cost, often taking more than several hours to converge when sampling the Bayesian posterior. We, therefore, recommend it be viewed as a complementary method to that of the STFT-based approach.

Allison, James R. [First Light Fusion Ltd., Yarnto↗

TMS for Instantiating a Knowledge Base With Incomplete Data

A computer program that belongs to the class known among software experts as output truth-maintenance-systems (output TMSs) has been devised as one of a number of software tools for reducing the size of the knowledge base that must be searched during execution of artificial- intelligence software of the rule-based inference-engine type in a case in which data are missing. This program determines whether the consequences of activation of two or more rules can be combined without causing a logical inconsistency. For example, in a case involving hypothetical scenarios that could lead to turning a given device on or off, the program determines whether a scenario involving a given combination of rules could lead to turning the device both on and off at the same time, in which case that combination of rules would not be included in the scenario.

James, Mark↗