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At least 1,189 records · Page 66

Conformation-independent structural comparison of macromolecules with ProSMART

The Procrustes Structural Matching Alignment and Restraints Tool (ProSMART) has been developed to allow local comparative structural analyses independent of the global conformations and sequence homology of the compared macromolecules. This allows quick and intuitive visualization of the conservation of backbone and side-chain conformations, providing complementary information to existing methods. The identification and exploration of (dis)similarities between macromolecular structures can help to gain biological insight, for instance when visualizing or quantifying the response of a protein to ligand binding. Obtaining a residue alignment between compared structures is often a prerequisite for such comparative analysis. If the conformational change of the protein is dramatic, conventional alignment methods may struggle to provide an intuitive solution for straightforward analysis. To make such analyses more accessible, the Procrustes Structural Matching Alignment and Restraints Tool (ProSMART) has been developed, which achieves a conformation-independent structural alignment, as well as providing such additional functionalities as the generation of restraints for use in the refinement of macromolecular models. Sensible comparison of protein (or DNA/RNA) structures in the presence of conformational changes is achieved by enforcing neither chain nor domain rigidity. The visualization of results is facilitated by popular molecular-graphics software such as CCP4mg and PyMOL, providing intuitive feedback regarding structural conservation and subtle dissimilarities between close homologues that can otherwise be hard to identify. Automatically generated colour schemes corresponding to various residue-based scores are provided, which allow the assessment of the conservation of backbone and side-chain conformations relative to the local coordinate frame. Structural comparison tools such as ProSMART can help to break the complexity that accompanies the constantly growing pool of structural data into a more readily accessible form, potentially offering biological insight or influencing subsequent experiments.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Tool for Searching USEPA’s TMDL Reports Repository to Analyze TMDL Modeling State of the Practice

We report that total maximum daily load (TMDL) reports archived in the USEPA database can provide useful guidance for the development of new TMDLs and watershed management plans by aiding the selection process for the most appropriate modeling tool. The database contains more than 70,000 individual documents; therefore, a rapid screening tool is needed to elicit information about previous modeling studies that might help guide stakeholders and regulators in dealing with the TMDL application at hand, save time, and lead to a more cost-effective regulatory outcome. The paper introduces a smart web-based software tool for TMDL report selection based on different water management criteria. The tool uses an automated search method based on frequency of common water body impairments and models to categorize and select TMDL reports. Additionally, this tool provides better insight on the relationship between the modeling tools used and the impairments they address. This tool has proven useful in reviewing the state of integrated modeling (IM), applications of remote sensing (RS), application of basic versus mechanistic modeling, margin of safety (MOS) assessment, and the state of practice regarding relationships among impairments, models, and regions where TMDLs for various pollutants are being developed. Despite limitations on direct access to all TMDLs developed and reported to the EPA by the user, the tool can be improved over time to derive a better understanding of the relationships between these impairments, data, and the TMDL development process. Finally, although the MOS is not directly quantified in the current version of the TRS tool, this feature may be incorporated in future updates.

54 ENVIRONMENTAL SCIENCES↗

Partial defect verification of spent fuel assemblies by PDET: Principle and field testing in Interim Spent fuel Storage Facility (CLAB) in Sweden

Here, the need for the development of a credible method and instrument for partial defect verification of spent fuel has been emphasized over a few decades in the safeguards communities as the diverted spent fuel pins can be the source of nuclear terrorism or devices. The need is increasingly more important and even urgent as many countries have started to transfer spent fuel to so called "difficult-to-access" areas such as dry storage casks, reprocessing or geological repositories. Partial defect verification is required by IAEA before spent fuel is placed into "difficult-to-access" areas. Earlier, Lawrence Livermore National Laboratory (LLNL) has reported the successful development of a new, credible partial defect verification method for pressurized water reactor (PWR) spent fuel assemblies without use of operator data, and further reported the validation experiments using commercial spent fuel assemblies with some missing fuel pins. The method was found to be robust as the method is relatively invariant to the characteristic variations of spent fuel assemblies such as initial fuel enrichment, cooling time, and burn-up. Since then, the PDET system has been designed and prototyped for 17×17 PWR spent fuel assemblies, complete with data acquisition software and acquisition electronics. In this paper, a summary description of the PDET development followed by results of the first successful field testing using the integrated PDET system and actual spent fuel assemblies performed in a commercial spent fuel storage site, known as Central Interim Spent fuel Storage Facility (CLAB) in Sweden will be presented. In addition to partial defect detection initial studies have determined that the tool can be used to verify the operator declared average burnup of the assembly as well as intra-assembly bunrup levels.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

GradientGraph

Under this SBIR Phase II, Reservoir Labs has developed G2 Analytics, a new technology that allows network operators to analyze bottleneck and flow performance with high precision. G2 delivers a new analytical approach and framework to resolve a variety of key problems found in modern communication networks, including: traffic engineering, routing, flow scheduling, network design, capacity planning, resiliency analysis, network slicing, or service level agreement (SLA) management, among others. G2 leverages the bottleneck structure of congestion-controlled communication networks, a recent mathematical discovery by the Reservoir team [RL19b, RL20a, RL20b, RL21a]. Bottleneck structures reveal how perturbations on flows and links propagate through the network, providing an analytical framework to measure (qualitatively and quantitatively) the ripple effects induced as they traverse the network. Leveraging the mathematics of bottleneck structures, Reservoir Labs is developing the G2 technology to provide network operators with a framework to design, optimize and troubleshoot network performance. This delivery includes the G2 software stack.

Yellamraju, Sruthi↗

Interactive Mesh Generation and Comparison Tools for Nuclear Energy Advanced Modeling & Simulation Phase I. Final Report

The promise of computer simulations for nuclear reactor designs is the opportunity to speed up the design process while also improving safety, providing more detail and higher fidelity, reducing cost, minimizing schedule risk, and avoiding many other potential problems; because simulations have the potential to be much less expensive and time-consuming than traditional development – where scale models and physical tests require construction and long lead times – it is possible to consider more alternatives and complete more comprehensive assessments before the design is finalized and constructed. As more design scenarios are studied by simulation, the speed that simulations promise is only available as long as bottlenecks are addressed for these scenarios. A frequent bottleneck is the amount of human labor required to describe the shape of the objects being designed and decompose the shape into simple elements, such as hexahedra, that are small enough to capture the physical phenomena of interest without being so small that even fast computers cannot perform the simulation in a reasonable amount of time. Recently, techniques for creating all-hexahedral decompositions have been developed, but they require some human input. Many simulation codes prefer all-hexahedral decompositions, so we proposed to evaluate the feasibility of these techniques on nuclear reactor geometries to see whether they required too much human input to be commercially viable. Our study concluded that they can be made viable with some additional software tools to reduce the amount of user input required.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Innovative Open-Source Energy Software to Drive and Enable Energy Savings and Process Optimization

U.S. Department of Energy (DOE) energy system-analysis software tools have been used for years helping to identify over 170 TBTU/year of energy savings through the Save Energy Now “Energy Savings Assessment” and Better Plants “In-Plant Training” Programs. While most of the fundamental energy savings opportunities do not evolve much with time, computer technology never stops, leaving most of these software tools inoperable on modern computers.This has sparked an initiative to revitalize the DOE energy system analysis tools into a new, open-source, integrated software tool suite - MEASUR. Designed for industrial energy coordinators, engineers, utility-program implementers and individuals who are interested in improving system efficiency, MEASUR can aide users in identifying, assessing, and quantifying energy savings opportunities within pump, fan, process heating, steam, motors, and compressed air systems. In addition, the software contains over 40 equipment and property calculators for simple energy-related calculations and analyses.This paper will present a results comparison for each energy-consuming system using data from past DOE-sponsored energy assessments (to establish the accuracy of the savings algorithms) to validate and verify the accuracy of the energy and cost savings calculated by MEASUR. Additionally, an example highlighting 3rd-party development of the tool’s opensource framework into real-time sensor systems and efficiency-optimization will be presented.

Armstrong, Kristina↗

Mesh generation for confined fusion plasma simulation

XGC1 and M3D-C 1 are two fusion plasma simulation codes being developed at Princeton Plasma Physics Laboratory. XGC1 uses the particle-in-cell method to simulate gyrokinetic neoclassical physics and turbulence. M3D-C 1 solves the two-fluid resistive magnetohydrodynamic equations with the C 1 finite elements. This paper presents the software tools and libraries that were combined to form the geometry and automatic meshing procedures for these codes. Finally, specific consideration has been given to satisfy the mesh configuration and element shape quality constraints of XGC1 and M3D-C 1 .

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

SU-E-T-545: MLC Distance Travelled as a Predictor for Motor Failure

Purpose: To study the frequency of Multi-Leaf Collimator (MLC) leaf failures, investigate methods to predict them and reduce linac downtime. Methods: A Varian HD120 MLC was used in our study. The hyperterminal MLC errors logged from 06/2012 to 12/2014 were collected. Along with the hyperterminal errors, the MLC motor changes and all other MLC interventions by the linear accelerator engineer were recorded. The MLC dynalog files were also recorded on a daily basis for each treatment and during linac QA. The dynalog files were analyzed to calculate root mean square errors (RMS) and cumulative MLC travel distance per motor. An in-house MatLab code was used to analyze all dynalog files, record RMS errors and calculate the distance each MLC traveled per day. Results: A total of 269 interventions were recorded over a period of 18 months. Of these, 146 included MLC motor leaf change, 39 T-nut replacements, and 84 MLC cleaning sessions. Leaves close to the middle of each side required the most maintenance. In the A bank, leaves A27 to A40 recorded 73% of all interventions, while the same leaves in the B bank counted for 52% of the interventions. On average, leaves in the middle of the bank had their motors changed approximately every 1500m of travel. Finally, it was found that the number of RMS errors increased prior to an MLC motor change. Conclusion: An MLC dynalog file analysis software was developed that can be used to log daily MLC usage. Our eighteen-month data analysis showed that there is a correlation between the distance an MLC travels, the RMS and the life of the MLC motor. We plan to use this tool to predict MLC motor failures and with proper and timely intervention, reduce the downtime of the linac during clinical hours.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

PIPER: Performance Insight for Programmers and Exascale Runtimes (Final Technical Report)

This project concentrated on the development of novel performance tools and analysis techniques for large scale parallel systems and applications, eventually targeting exascale platforms. Activities conducted included work to novel root cause detection approaches and an auto-tuning framework for parallel systems. The work has led to several software solutions, which are available as open source.

97 MATHEMATICS AND COMPUTING↗

Software Requirements for a Consequence Management Sample Data Simulator for Training and Drills

This document describes the requirements for a software tool that will enable FRMAC to simulate large sets of sample result data that is based realistically on simulated radionuclide deposition grids from NARAC. The user of this tool would be scientists involved in exercise and drill planning or part of the simulation cell of an exercise controller team. A key requirement is that this tool must be able to be run with a reasonable amount of training and job aids by any person within the Assessment, Laboratory Analysis, or Monitoring and Sampling divisions of the FRMAC to support any level of exercise from the small IPX to the national level full scale exercise. This tool should be relatively lean and stand-alone so that the user can run it in the field with limited IT resources. This document will describe the desired architecture, design characteristics, order of operations, and algorithms that can be given to a software development team to assist them in project scoping, costing, and eventually, development.

61 RADIATION PROTECTION AND DOSIMETRY↗

PathTrace and MPVEASI: A Path Analysis Comparative Validation Study

Developed in 2018, PathTrace is a software package built with the intention of making path analysis simple and intuitive. PathTrace is a top-down pathway analysis software where a user is able to explore vulnerable pathways into a facility. The intention of utilizing a software tool like PathTrace is to characterize an existing physical protection system (PPS) and to upgrade the system to achieve a high level of response interruption, or probability of interruption (P I ) of the adversary. There are four steps for conducting path analysis using PathTrace. The first step is to identify an image to use to build the model and scale the model within PathTrace using a section of known distance (wall or fence perimeter, for example). The scaling process will produce a grid of cells through which the user is able to build a model. The second step is to fill out the grid of cells with four categories of materials: Barriers, Detection Areas, Jumps, and Targets. These materials apply associated delay and detection values to the cells in which they are applied. The third step is to represent the adversary and response forces. The adversaries are represented by their capabilities in interacting with the materials identified in step two, and the response is represented by how quickly they will be able to respond to an adversary attack. Finally, the user is able to take all of the information from the previous three steps and perform a Most Vulnerable Path (MVP) analysis. In this stage, the user is able to visualize vulnerable adversary pathways and reason about how to upgrade these pathways to provide a high level of P I .

97 MATHEMATICS AND COMPUTING↗

FY24 – FY25 Efforts to Revive the ANS-54.8 Liquid Metal Fire Protection in LMR Plants Standard

The current multi-year effort seeks to utilize national laboratory support from Argonne to expedite revival of the ANS-54.8 standard titled “Liquid Metal Fire Protection in LMR Plants.” To achieve that objective, the following tasks were identified: Task 1 involves working directly with ANS to revive the ANS-54.8 Working Group. This was to be accomplished by completing necessary paperwork, submitting that paperwork to ANS for approval, enlisting potential working group members from industry, the NRC, national laboratories, and universities, and organizing and leading Working Group activities. The overall purpose of the Working Group is to develop an updated draft of ANS-54.8 for review and approval by ANS consensus committees, the ANS Standards Board, and certification from ANSI. Task 2 focuses on leveraging historical information and expertise at Argonne related to sodium fire protection systems and strategies. For more than a decade, Argonne has worked on both international and domestic projects related to sodium fire protection system development and evaluation. The goal of this task is to utilize that experience to help inform the ANS-54.8 Working Group on important considerations that may be addressed in an updated draft of ANS-54.8. Task 3 focuses on leveraging Argonne experience in the development of and use of analysis methods and tools for the simulation of sodium fire scenarios and evaluation of the effectiveness of sodium fire protection systems and strategies. For more than a decade, Argonne has recovered, modified, and utilized several historical sodium fire analysis software tools. The goal of this task is to utilize that experience to help inform the ANS-54.8 Working Group of best practices for sodium fire progression analysis that may be addressed in an updated draft of ANS-54.8.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Land-surface parameter optimisation using data assimilation techniques: the adJULES system V1.0

Land-surface models (LSMs) are crucial components of the Earth system models (ESMs) that are used to make coupled climate–carbon cycle projections for the 21st century. The Joint UK Land Environment Simulator (JULES) is the land-surface model used in the climate and weather forecast models of the UK Met Office. JULES is also extensively used offline as a land-surface impacts tool, forced with climatologies into the future. In this study, JULES is automatically differentiated with respect to JULES parameters using commercial software from FastOpt, resulting in an analytical gradient, or adjoint, of the model. Using this adjoint, the adJULES parameter estimation system has been developed to search for locally optimum parameters by calibrating against observations. This paper describes adJULES in a data assimilation framework and demonstrates its ability to improve the model–data fit using eddy-covariance measurements of gross primary production (GPP) and latent heat (LE) fluxes. adJULES also has the ability to calibrate over multiple sites simultaneously. This feature is used to define new optimised parameter values for the five plant functional types (PFTs) in JULES. The optimised PFT-specific parameters improve the performance of JULES at over 85 % of the sites used in the study, at both the calibration and evaluation stages. Furthermore, the new improved parameters for JULES are presented along with the associated uncertainties for each parameter.

58 GEOSCIENCES↗

Grid Strength Analysis for Integrating 30 GW of Offshore Wind Generation by 2030 in the U.S. Eastern Interconnection: Preprint

Offshore wind is a key player in the transition to a decarbonized electric gird, and the United States has set ambitious goals of integrating 30 GW of offshore wind capacity by 2030 and 110 GW by 2050. To facilitate this integration, the National Renewable Energy Laboratory and the Pacific Northwest National Laboratory are conducting the Atlantic Offshore Wind Transmission Study to assess transmission solutions. To achieve the 110-GW target by 2050, meticulous planning for network expansion and resource allocation is essential; however, meeting the 2030 goals requires integrating offshore wind power with minimal system upgrades, thus necessitating a careful study of grid strength and stability. The study team developed the Grid Strength Analysis Tool (GSAT) to assess system strength under various operating conditions and contingencies, focusing on the proposed integration of 30 GW of offshore wind power by 2030. In this paper, we provide a summary of key features of the GSAT software and results of the grid strength analysis for integrating 30 GW of offshore wind generation by 2030 in the U.S. Eastern Interconnection.

Automated System-wide Strength Evaluation Tool (AS↗

Preliminary Results on Process Modeling Tools for Determining Variability in Additively Manufactured Stainless Steel 316 Parts

The Advanced Materials and Manufacturing Technologies program aims to accelerate the development, qualification, demonstration, and deployment of advanced materials and manufacturing technologies to enable reliable and economical nuclear energy. However, the distinct characteristics of additive manufacturing (AM) materials, stemming from their unique processing history, microstructure, and properties, pose significant challenges for the qualification and certification of nuclear components. These challenges primarily arise from component-scale variations in microstructure and properties influenced by local process conditions and geometry, which affect thermal history, melt pool dynamics, and microstructure evolution. Computational modeling tools can play a crucial role in predicting and controlling this variability. This report presents preliminary results on process modeling tools designed to predict microstructure variability in additively manufactured stainless steel 316 parts. It details the software packages and physical modeling approaches employed to simulate an AM component within an automated process modeling workflow. Initial results are demonstrated through comparisons between predicted microstructures and experimental measurements across various representative processing conditions. The report concludes by discussing the challenges inherent in process modeling of AM components and outlines a plan for future development needs.

36 MATERIALS SCIENCE↗

NEAMS Workbench and Bison Fuel Performance Remote Application Configuration

The mission of the US Department of Energy (DOE) Nuclear Energy Advanced Modeling and Simulation (NEAMS) Program is to develop, apply, deploy, and support state-of-the-art predictive modeling and simulation tools for the design and analysis of current and future nuclear energy systems. This is accomplished using computing architectures that range from laptops to leadership class facilities. The NEAMS Workbench [1,2,3] initiative will facilitate the transition from conventional computer codes to high-fidelity ones by providing a common analysis environment and interface for model creation, review, execution, output review, and visualization for integrated codes. The BISON fuel performance code [4] is a finite element method (FEM)-based software being developed by multiple organizations led by the Idaho National Laboratory for the US Department of Energy Office of Nuclear Energy. BISON can simulate a variety of fuel and cladding compositions and geometries in varying dimensionalities, depending upon the problem type and complexity, including one-dimensional (1D), 1.5D, 2D axially symmetric (2D-rz), 2D radial-azimuthal (2D-rθ), or 3D models. The NEAMS Workbench allows execution of the BISON fuel performance code on local and remote compute resources. In this report, the detailed instructions of configuring the NEAMS Workbench for remote execution of the BISON fuel performance code on a portable batch system (PBS)-scheduled compute resource, as well the transfer of associated Bison files, is illustrated.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

simuwatt - A Tablet Based Electronic Auditing Tool

'simuwatt Energy Auditor' (TM) is a new tablet-based electronic auditing tool that is designed to dramatically reduce the time and cost to perform investment-grade audits and improve quality and consistency. The tool uses the U.S. Department of Energy's OpenStudio modeling platform and integrated Building Component Library to automate modeling and analysis. simuwatt's software-guided workflow helps users gather required data, and provides the data in a standard electronic format that is automatically converted to a baseline OpenStudio model for energy analysis. The baseline energy model is calibrated against actual monthly energy use to ASHRAE Standard 14 guidelines. Energy conservation measures from the Building Component Library are then evaluated using OpenStudio's parametric analysis capability. Automated reporting creates audit documents that describe recommended packages of energy conservation measures. The development of this tool was partially funded by the U.S. Department of Defense's Environmental Security Technology Certification Program. As part of this program, the tool is being tested at 13 buildings on 5 Department of Defense sites across the United States. Results of the first simuwatt audit tool demonstration are presented in this paper.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

REALIZATION OF A AUTOMATED T-WAY COMBINATORIAL TESTING APPROACH FOR A SOFTWARE BASED EMBEDDED DIGITAL DEVICE

Under the Department of Energy’s Light Water Reactor Sustainability Program, within the Plant Modernization research pathway, the Digital I&C Qualification Project is identifying new methods that would be beneficial in qualifying digital I&C systems and devices for safety-related usage. One such method that would be useful in qualifying field components such as sensors and actuators is the concept of testability. The Nuclear Regulatory Commission (NRC) considers testability to be one of two design attributes sufficient to eliminate consideration of software-based or software logic-based common cause failure (the other being diversity). The NRC defines acceptable “testability” as follows: Testability – A system is sufficiently simple such that every possible combination of inputs and every possible sequence of device states are tested and all outputs are verified for every case (100% tested). [NUREG 0800, Chapter 7, Branch Technical Position (BTP) 7-19] This qualification method has never proven to be practical in view of the very large number of combinations of inputs and sequences of device states for a typical I&C device. However, many of these combinations are not unique in the sense that they represent the same state space or in that that they represent state space that would not affect the critical design basis functions of the device. Therefore, the state space of interest might possibly be reduced to a manageable dimension through such analysis. This project will focus on a representative I&C device similar in design, function, and complexity to the types of devices that would likely be deployed in nuclear power plants as digital or software based sensors and actuators (e.g. Smart Sensors). Analysis will be conducted to determine the feasibility of testing this device in a manner consistent with the NRC definition. This report describes the development of test process for Bounded Exhaustive Testing with respect to Combinatorial Test (CT) methods. The report describes the candidate Device Under Test SW – the VCU smart sensor, conceptual experimental methods for stated test objectives, description of the process, tools, resources, and computing. This information will be used to fully develop a detailed test plan (based on statistical measure needs) and test environment for conducting an I&C device testability demonstration study. The future planed experimental study of this project is to demonstrate digital qualification via Bounded Exhaustive Testability with respect to Common Cause Failure.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗