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At least 1,189 records · Page 66

Low-Frequency Mutational Heterogeneity of Invasive Ductal Carcinoma Subtypes: Information to Direct Precision Oncology

Information regarding the role of low-frequency hotspot cancer-driver mutations (CDMs) in breast carcinogenesis and therapeutic response is limited. Using the sensitive and quantitative Allele-specific Competitor Blocker PCR (ACB-PCR) approach, mutant fractions (MFs) of six CDMs (PIK3CA H1047R and E545K, KRAS G12D and G12V, HRAS G12D, and BRAF V600E) were quantified in invasive ductal carcinomas (IDCs; including ~20 samples per subtype). Measurable levels (i.e., ≥ 1 × 10 -5 , the lowest ACB-PCR standard employed) of the PIK3CA H1047R, PIK3CA E545K, KRAS G12D, KRAS G12V, HRAS G12D, and BRAF V600E mutations were observed in 34/81 (42%), 29/81 (36%), 51/81 (63%), 9/81 (11%), 70/81 (86%), and 48/81 (59%) of IDCs, respectively. Correlation analysis using available clinicopathological information revealed that PIK3CA H1047R and BRAF V600E MFs correlate positively with maximum tumor dimension. Analysis of IDC subtypes revealed minor mutant subpopulations of critical genes in the MAP kinase pathway (KRAS, HRAS, and BRAF) were prevalent across IDC subtypes. Few triple-negative breast cancers (TNBCs) had appreciable levels of PIK3CA mutation, suggesting that individuals with TNBC may be less responsive to inhibitors of the PI3K/AKT/mTOR pathway. These results suggest that low-frequency hotspot CDMs contribute significantly to the intertumoral and intratumoral genetic heterogeneity of IDCs, which has the potential to impact precision oncology approaches.

59 BASIC BIOLOGICAL SCIENCES↗

RADiCAL—Precision Timing, Ultracompact, Radiation-Hard Electromagnetic Calorimetry

To address the challenges of providing high-performance calorimetry in future hadron collider experiments under conditions of high luminosity and high radiation (FCC-hh environments), we conducted R&D on advanced calorimetry techniques suitable for such operation, based on scintillation and wavelength-shifting technologies and photosensor (SiPM and SiPM-like) technology. In particular, we focused our attention on ultra-compact radiation-hard EM calorimeters based on modular structures (RADiCAL modules) consisting of alternating layers of the very dense absorber and scintillating plates, read out via radiation hard wavelength shifting (WLS) solid fiber or capillary elements to photosensors positioned either proximately or remotely, depending upon their radiation tolerance. RADiCAL modules provide the capability to measure simultaneously and with high precision the position, energy and timing of EM showers. This paper provides an overview of the instrumentation and photosensor R&D associated with the RADiCAL program.

Anderson, Thomas↗

Ab Initio Calculations of Possible γ-Gauche Effects in the 13C-NMR for Methine and Carbonyl Carbons in Precise Polyethylene Acrylic Acid Copolymers

The impacts of local polymer chain conformations on the methine and carbonyl 13C-NMR chemical shifts for polyethylene acrylic acid p(E-AA) copolymers were predicted using ab initio methods. Using small molecular cluster models, the magnitude and sign of the γ-gauche torsional angle effect, along with the impact of local tetrahedral structure distortions near the carbonyl group, on the 13C-NMR chemical shifts were determined. These 13C-NMR chemical shift variations were compared to the experimental trends observed for precise p(E-AA) copolymers as a function acid group spacing and degree of zinc-neutralization in the corresponding p(E-AA) ionomers. These ab initio calculations address the future ability of 13C-NMR chemical shift variations to provide information about the local chain conformations in p(E-AA) copolymer materials.

13C-NMR↗

Precision Synthesis of Conjugated Polymer Films by Surface-Confined Stepwise Sonogashira Cross-Coupling

Thin films of poly(arylene ethynylene)-conjugated polymers, including low-energy-gap donor–acceptor polymers, can be prepared via stepwise polymerization utilizing surface-confined Sonogashira cross-coupling. This robust and efficient polymerization protocol yields conjugated polymers with a precise molecular structure and with nanometer-level control of the organization and the uniform alignment of the macromolecular chains in the densely packed film. In addition to high stability and predictable and well-defined molecular organization and morphology, the surface-confined conjugated polymer chains experience significant interchain electronic interactions, resulting in dominating intermolecular π-electron delocalization which is primarily responsible for the electronic and spectroscopic properties of polymer films. The fluorescent films demonstrate remarkable performance in chemosensing applications, showing a turn-off fluorescent response on the sub-ppt (part per trillion) level of nitroaromatic explosives in water. This unique sensitivity is likely related to the enhanced exciton mobility in the uniformly aligned and structurally monodisperse polymer films.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Fast, Nondestructive and Precise Biomass Measurements Are Possible Using Lidar-Based Convex Hull and Voxelization Algorithms

Light detection and ranging (lidar) scanning tools are available that can make rapid digital estimations of biomass. Voxelization and convex hull are two algorithms used to calculate the volume of the scanned plant canopy, which is correlated with biomass, often the primary trait of interest. Voxelization splits the scans into regular-sized cubes, or voxels, whereas the convex hull algorithm creates a polygon mesh around the outermost points of the point cloud and calculates the volume within that mesh. In this study, digital estimates of biomass were correlated against hand-harvested biomass for field-grown corn, broom corn, and energy sorghum. Voxelization (r = 0.92) and convex hull (r = 0.95) both correlated well with plant dry biomass. Lidar data were also collected in a large breeding trial with nearly 900 genotypes of energy sorghum. In contrast to the manual harvest studies, digital biomass estimations correlated poorly with yield collected from a forage harvester for both voxel count (r = 0.32) and convex hull volume (r = 0.39). However, further analysis showed that the coefficient of variation (CV, a measure of variability) for harvester-based estimates of biomass was greater than the CV of the voxel and convex-hull-based biomass estimates, indicating that poor correlation was due to harvester imprecision, not digital estimations. Overall, results indicate that the lidar-based digital biomass estimates presented here are comparable or more precise than current approaches.

Environmental Sciences & Ecology↗

Siberian Snakes, Figure-8 and Spin Transparency Techniques for High Precision Experiments with Polarized Hadron Beams in Colliders

We present a review of the possibilities to conduct experiments of high efficiency in the nuclear and high energy physics with spin-polarized beams in a collider complex, configuration of which includes Siberian snakes or figure-8 collider ring. Special attention is given to the recently elicited advantageous possibility to conduct high precision experiments in a regime of the spin transparency (ST) when the design global spin tune is close to zero. In this regime, the polarization control is realized by use of spin navigators (SN), which are compact special insertions of magnets dedicated to a high flexibility spin manipulation including frequent spin flips.

43 PARTICLE ACCELERATORS↗

Toward precision supermassive black hole masses using megamaser disks

Megamaser disks provide the most precise and accurate extragalactic supermassive black hole (BH) masses. Here we describe a search for megamasers in nearby galaxies using the Green Bank Telescope (GBT). We focus on galaxies where we believe that we can resolve the gravitational sphere of influence of the BH and derive a stellar or gas dynamical measurement with optical or NIR observations. Since there are only a handful of super massive BHs that have direct BH mass measurements from more than one method, even a single galaxy with a megamaser disk and a stellar dynamical BH mass would provide necessary checks on the stellar dynamical methods. We targeted 87 objects from the Hobby–Eberly Telescope Massive Galaxy Survey, and detected no new maser disks. Most of the targeted objects are elliptical galaxies with typical stellar velocity dispersions of 250 km s{sup −1} and distances within 130 Mpc. We discuss the implications of our non-detections, whether they imply a threshold X-ray luminosity required for masing, or possibly reflect the difficulty of maintaining a masing disk around much more massive (≳10{sup 8} M{sub ⊙}) BHs at a low Eddington ratio. Given the power of maser disks for probing BH accretion and demographics, we suggest that future maser searches should endeavour to remove remaining sample biases, in order to sort out the importance of these covariant effects.

79 ASTRONOMY AND ASTROPHYSICS↗

Demonstrating high-precision, multiband transit photometry with MuSCAT: A case for HAT-P-14B

The Multicolor Simultaneous Camera for studying Atmospheres of Transiting exoplanets (MuSCAT) is an optical three-band (g{sub 2}{sup ′}-, r{sub 2}{sup ′}- and z{sub s,2}-band) imager that was recently developed for the 188 cm telescope at Okayama Astrophysical Observatory with the aim of validating and characterizing transiting planets. In a pilot observation with MuSCAT we observed a primary transit of HAT-P-14b, a high-surface gravity (g{sub p} = 38 ms{sup −2}) hot Jupiter around a bright (V = 10) F-type star. From a 2.9 hr observation we achieved the five-minute binned photometric precisions of 0.028%, 0.022%, and 0.024% in the g{sub 2}{sup ′}, r{sub 2}{sup ′}, and z{sub s,2} bands, respectively, which provided the highest-quality photometric data for this planet. Combining these results with those of previous observations, we search for variations of transit timing and duration over five years as well as variations of planet-star radius ratio (R{sub p}/R{sub s}) with wavelengths, but can find no considerable variation in any parameters. On the other hand, using the transit-subtracted light curves we simulate the achievable measurement error of R{sub p}/R{sub s} with MuSCAT for various planetary sizes, assuming three types of host stars: HAT-P-14, the nearby K-dwarf HAT-P-11, and the nearby M-dwarf GJ1214. Comparing our results with the expected atmospheric scale heights, we find that MuSCAT is capable of probing the atmospheres of planets as small as a sub-Jupiter (R{sub p}∼6R{sub ⊕}) around HAT-P-14 in all bands, a Neptune (∼4R{sub ⊕}) around HAT-P-11 in all bands, and a super-Earth (∼2.5R{sub ⊕}) around GJ1214 in r{sub 2}{sup ′} and z{sub s,2} bands. These results promise that MuSCAT will produce fruitful scientific outcomes in the K2 and TESS era.

79 ASTRONOMY AND ASTROPHYSICS↗

PRECISE MEASUREMENT OF THE REIONIZATION OPTICAL DEPTH FROM THE GLOBAL 21 cm SIGNAL ACCOUNTING FOR COSMIC HEATING

As a result of our limited data on reionization, the total optical depth for electron scattering, τ, limits precision measurements of cosmological parameters from the Cosmic Microwave Background (CMB). It was recently shown that the predicted 21 cm signal of neutral hydrogen contains enough information to reconstruct τ with sub-percent accuracy, assuming that the neutral gas was much hotter than the CMB throughout the entire epoch of reionization (EoR). Here we relax this assumption and use the global 21 cm signal alone to extract τ for realistic X-ray heating scenarios. We test our model-independent approach using mock data for a wide range of ionization and heating histories and show that an accurate measurement of the reionization optical depth at a sub-percent level is possible in most of the considered scenarios even when heating is not saturated during the EoR, assuming that the foregrounds are mitigated. However, we find that in cases where heating sources had hard X-ray spectra and their luminosity was close to or lower than what is predicted based on low-redshift observations, the global 21 cm signal alone is not a good tracer of the reionization history.

79 ASTRONOMY AND ASTROPHYSICS↗

A PRECISE determination of the mid-infrared interstellar extinction law based on the Apogee spectroscopic survey

A precise measure of the mid-infrared interstellar extinction law is crucial for investigating the properties of interstellar dust, especially larger-sized grains. Based on the stellar parameters derived from the SDSS-III/Apache Point Observatory Galaxy Evolution Experiment (APOGEE) spectroscopic survey, we select a large sample of G-type and K-type giants as the tracers of the Galactic mid-infrared extinction. We calculate the intrinsic stellar color excesses from the stellar effective temperatures and use them to determine the mid-infrared extinction for a given line of sight. For the entire sky of the Milky Way surveyed by APOGEE, we derive the extinctions (relative to A{sub K{sub S}}, the K {sub S}-band extinction at wavelength λ = 2.16 μm) for the four Wide-field Infrared Survey Explorer (WISE) bands at 3.4, 4.6, 12, and 22 μm, the four Spitzer/Infrared Array Camera bands at 3.6, 4.5, 5.8, and 8 μm, the Spitzer/MIPS24 band at 23.7 μm, and, for the first time, the AKARI/S9W band at 8.23 μm. Our results agree with previous works in that the extinction curve is flat in the ∼3–8 μm wavelength range and is generally consistent with the R{sub V} = 5.5 model curve, except our determination exceeds the model prediction in the WISE/W4 band. Although some previous works found that the mid-IR extinction law appears to vary with the extinction depth A{sub K{sub S}}, no noticeable variation has been found in this work. The uncertainties are analyzed in terms of the bootstrap resampling method and Monte-Carlo simulation and are found to be rather small.

79 ASTRONOMY AND ASTROPHYSICS↗

The California- Kepler Survey. II. Precise Physical Properties of 2025 Kepler Planets and Their Host Stars

We present stellar and planetary properties for 1305 Kepler Objects of Interest hosting 2025 planet candidates observed as part of the California- Kepler Survey. We combine spectroscopic constraints, presented in Paper I, with stellar interior modeling to estimate stellar masses, radii, and ages. Stellar radii are typically constrained to 11%, compared to 40% when only photometric constraints are used. Stellar masses are constrained to 4%, and ages are constrained to 30%. We verify the integrity of the stellar parameters through comparisons with asteroseismic studies and Gaia parallaxes. We also recompute planetary radii for 2025 planet candidates. Because knowledge of planetary radii is often limited by uncertainties in stellar size, we improve the uncertainties in planet radii from typically 42% to 12%. We also leverage improved knowledge of stellar effective temperature to recompute incident stellar fluxes for the planets, now precise to 21%, compared to a factor of two when derived from photometry.

79 ASTRONOMY AND ASTROPHYSICS↗

Precise and Fast Computation of the Gravitational Field of a General Finite Body and Its Application to the Gravitational Study of Asteroid Eros

In order to obtain the gravitational field of a general finite body inside its Brillouin sphere, we developed a new method to compute the field accurately. First, the body is assumed to consist of some layers in a certain spherical polar coordinate system and the volume mass density of each layer is expanded as a Maclaurin series of the radial coordinate. Second, the line integral with respect to the radial coordinate is analytically evaluated in a closed form. Third, the resulting surface integrals are numerically integrated by the split quadrature method using the double exponential rule. Finally, the associated gravitational acceleration vector is obtained by numerically differentiating the numerically integrated potential. Numerical experiments confirmed that the new method is capable of computing the gravitational field independently of the location of the evaluation point, namely whether inside, on the surface of, or outside the body. It can also provide sufficiently precise field values, say of 14–15 digits for the potential and of 9–10 digits for the acceleration. Furthermore, its computational efficiency is better than that of the polyhedron approximation. This is because the computational error of the new method decreases much faster than that of the polyhedron models when the number of required transcendental function calls increases. As an application, we obtained the gravitational field of 433 Eros from its shape model expressed as the 24 × 24 spherical harmonic expansion by assuming homogeneity of the object.

79 ASTRONOMY AND ASTROPHYSICS↗

California-Kepler Survey. IX. Revisiting the Minimum-mass Extrasolar Nebula with Precise Stellar Parameters

We investigate a possible correlation between the solid surface density Σ of the minimum-mass extrasolar nebula (MMEN) and the host star mass M {sub ⋆} and metallicity [Fe/H]. Leveraging on the precise host star properties from the California-Kepler Survey (CKS), we found that Σ=50{sub −20}{sup +33} g cm{sup −2} (a/1 au){sup −1.75±0.07} (M {sub ⋆}/M {sub ⊙}){sup 1.04±0.22} 10{sup 0.22±0.05[Fe/H]} for Kepler-like systems (1–4R {sub ⊕}; a < 1 au). The strong M {sub ⋆} dependence is reminiscent of previous dust continuum results that the solid disk mass scales with M {sub ⋆}. The weaker [Fe/H] dependence shows that sub-Neptune planets, unlike giant planets, form readily in lower metallicity environment. The innermost region (a < 0.1 au) of an MMEN maintains a smooth profile despite a steep decline of planet occurrence rate: a result that favors the truncation of disks by corotating magnetospheres with a range of rotation periods, rather than the sublimation of dust. The Σ of Kepler multitransiting systems shows a much stronger correlation with M {sub ⋆} and [Fe/H] than singles. This suggests that the dynamically hot evolution that produced single systems also partially removed the memory of formation in disks. Radial-velocity planets yielded a MMEN very similar to CKS planets; transit-timing-variation planets’ postulated convergent migration history is supported by their poorly constrained MMEN. We found that lower mass stars have a higher efficiency of forming/retaining planets: for Sun-like stars, about 20% of the solid mass within ∼1 au are converted/preserved as sub-Neptunes, compared to 70% for late-K to early-M stars. This may be due to the lower binary fraction, lower giant-planet occurrence, or the longer disk lifetime of lower mass stars.

79 ASTRONOMY AND ASTROPHYSICS↗

Precise Dynamical Masses and Orbital Fits for β Pic b and β Pic c

We present a comprehensive orbital analysis to the exoplanets β Pictoris b and c that resolves previously reported tensions between the dynamical and evolutionary mass constraints on β Pic b. We use the Markov Chain Monte Carlo orbit code orvara to fit 15 years of radial velocities and relative astrometry (including recent GRAVITY measurements), absolute astrometry from Hipparcos and Gaia, and a single relative radial velocity measurement between β Pic A and b. We measure model-independent masses of 9.3{sub −2.5}{sup +2.6} M {sub Jup} for β Pic b and 8.3 ± 1.0 M {sub Jup} for β Pic c. These masses are robust to modest changes to the input data selection. We find a well-constrained eccentricity of 0.119 ± 0.008 for β Pic b, and an eccentricity of 0.21{sub −0.09}{sup +0.16} for β Pic c, with the two orbital planes aligned to within ∼05. Both planets’ masses are within ∼1σ of the predictions of hot-start evolutionary models and exclude cold starts. We validate our approach on N-body synthetic data integrated using REBOUND. We show that orvara can account for three-body effects in the β Pic system down to a level ∼5 times smaller than the GRAVITY uncertainties. Systematics in the masses and orbital parameters from orvara’s approximate treatment of multiplanet orbits are a factor of ∼5 smaller than the uncertainties we derive here. Future GRAVITY observations will improve the constraints on β Pic c’s mass and (especially) eccentricity, but improved constraints on the mass of β Pic b will likely require years of additional radial velocity monitoring and improved precision from future Gaia data releases.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

ACCESS and LRG-BEASTS: A Precise New Optical Transmission Spectrum of the Ultrahot Jupiter WASP-103b

We present a new ground-based optical transmission spectrum of the ultrahot Jupiter WASP-103b (T{sub eq}=2484 K). Our transmission spectrum is the result of combining five new transits from the ACCESS survey and two new transits from the LRG-BEASTS survey with a reanalysis of three archival Gemini/GMOS transits and one VLT/FORS2 transit. Our combined 11-transit transmission spectrum covers a wavelength range of 3900–9450 Å with a median uncertainty in the transit depth of 148 parts per million, which is less than one atmospheric scale height of the planet. In our retrieval analysis of WASP-103b’s combined optical and infrared transmission spectrum, we find strong evidence for unocculted bright regions (4.3σ) and weak evidence for H{sub 2}O (1.9σ), HCN (1.7σ), and TiO (2.1σ), which could be responsible for WASP-103b’s observed temperature inversion. Our optical transmission spectrum shows significant structure that is in excellent agreement with the extensively studied ultrahot Jupiter WASP-121b, for which the presence of VO has been inferred. For WASP-103b, we find that VO can only provide a reasonable fit to the data if its abundance is implausibly high and we do not account for stellar activity. Our results highlight the precision that can be achieved by ground-based observations and the impacts that stellar activity from F-type stars can have on the interpretation of exoplanet transmission spectra.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Radial-velocity Precision of ESPRESSO Through the Analysis of the Solar Twin HIP 11915

Different stellar phenomena affect radial velocities (RVs), causing variations large enough to make it difficult to identify planet signals from the stellar variability. RV variations caused by stellar oscillations and granulation can be reduced through some methods, but the impact of rotationally modulated magnetic activity on RV, due to stellar active regions, is harder to correct. New instrumentation promises an improvement in precision of one order of magnitude, from about 1 m s{sup -1} to about 10 cm s{sup -1}. In this context, we report our first results from 24 spectroscopic Echelle SPectrograph for Rocky Exoplanets and Stable Spectroscopic Observations (ESPRESSO)/Very-Large Telescope observations of the solar twin star HIP 11915, spread over 60 nights. We used a Gaussian Process approach and found for HIP 11915 a RV residual rms scatter of about 20 cm s{sup -1}, representing an upper limit for the performance of ESPRESSO.

47 OTHER INSTRUMENTATION↗

TOWARD HIGH-PRECISION SEISMIC STUDIES OF WHITE DWARF STARS: PARAMETRIZATION OF THE CORE AND TESTS OF ACCURACY

We present a prescription for parametrizing the chemical profile in the core of white dwarfs in light of the recent discovery that pulsation modes may sometimes be deeply confined in some cool pulsating white dwarfs. Such modes may be used as unique probes of the complicated chemical stratification that results from several processes that occurred in previous evolutionary phases of intermediate-mass stars. This effort is part of our ongoing quest for more credible and realistic seismic models of white dwarfs using static, parametrized equilibrium structures. Inspired by successful techniques developed in design optimization fields (such as aerodynamics), we exploit Akima splines for the tracing of the chemical profile of oxygen (carbon) in the core of a white dwarf model. A series of tests are then presented to better seize the precision and significance of the results that can be obtained in an asteroseismological context. We also show that the new parametrization passes an essential basic test, as it successfully reproduces the chemical stratification of a full evolutionary model.

79 ASTRONOMY AND ASTROPHYSICS↗

Kepler-11 is a Solar Twin: Revising the Masses and Radii of Benchmark Planets via Precise Stellar Characterization

The six planets of the Kepler-11 system are the archetypal example of a population of surprisingly low-density transiting planets revealed by the Kepler mission. We have determined the fundamental parameters and chemical composition of the Kepler-11 host star to unprecedented precision using an extremely high-quality spectrum from Keck-HIRES (R ≃ 67,000, S/N per pixel ≃260 at 600 nm). Contrary to previously published results, our spectroscopic constraints indicate that Kepler-11 is a young main-sequence solar twin. The revised stellar parameters and new analysis raise the densities of the Kepler-11 planets by between 20% and 95% per planet, making them more typical of the emerging class of “puffy” close-in exoplanets. We obtain photospheric abundances of 22 elements and find that Kepler-11 has an abundance pattern similar to that of the Sun with a slightly higher overall metallicity. We additionally analyze the Kepler light curves using a photodynamical model and discuss the tension between spectroscopic and transit/TTV-based estimates of stellar density.

79 ASTRONOMY AND ASTROPHYSICS↗