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At least 1,171 records · Page 65

interflow: A Python package to organize, calculate, and visualize sectoral interdependency flow data

Many economic sectors rely on an uninterrupted “upstream” supply of a resource to conduct their primary functions, leaving them vulnerable to adverse effects should that resource flow be interrupted or compromised (OECD, 2017; U.S. EPA, 2010). Well-known examples of these relationships include water demand by the energy sector (e.g., thermoelectric cooling for nuclear generation) (Grubert & Sanders, 2018; Webber, 2017) and energy demand by the water sector (e.g., electricity required to treat or move water in the public water sector) (Congressional Research Service, 2017) though many others exist. Being able to calculate and document these interdependencies and evaluate where the greatest cross-sectoral intensities and flows exist can reveal opportunities to enhance the overall network. Despite the implications and potential impacts, however, these interconnections and flows have been historically complex to analyze and understand. The interflow package provides a flexible tool to organize, calculate, and visualize (using Sankey diagrams and other visualizations) sectoral interdependency flows for multiple subsectors and resources. This tool can help decision-makers, researchers, and other audiences more easily pull meaning from these interdependencies to reveal multi-faceted opportunities and risks. interflow can help investigate questions such as (1) which sectors have high cross-resource dependencies, (2) how does demand for a resource in various sectors compare across regions, and (3) where the sectoral and regional opportunities are for enhanced efficiency, security, and resiliency.

97 MATHEMATICS AND COMPUTING↗

Precision Plasmonics with Monomers and Dimers of Spherical Gold Nanoparticles: Nonequilibrium Dynamics at the Time and Space Limits

Monomers and dimers of spherical gold nanoparticles (NPs) exhibit highly uniform plasmonic properties at the single-particle level due to their high structural homogeneity (precision plasmonics). Recent investigations in precision plasmonics have largely focused on static properties using conventional techniques such as transmission electron microscopy and optical dark-field microscopy. Here in this Feature Article, we first highlight the application of femtosecond time-resolved electron diffraction for monitoring the nonequilibrium dynamics of spherical gold NPs after ultrafast optical excitation. The analysis of the transient diffraction patterns allows us to directly obtain quantitative information on the incoherent excitation of the lattice, that is, heating upon electron–lattice equilibration, as well as on the development of strain due to lattice expansion on picosecond time scales. The controlled assembly of two spherical gold NPs into a dimer with a few nanometers gap leads to unique optical properties. Specifically, extremely high electric fields (hot spot) in the gap are generated upon resonant optical excitation. Conventional optical microscopy cannot spatially resolve this unique hot spot due to the optical diffraction limit. We therefore employed nonlinear photoemission electron microscopy to visualize hot spots in single dimers of spherical gold NPs. A quantitative comparison of different single dimers confirms the homogeneity of the hot spots on the single-particle level. Finally, overall, these initial results are highly encouraging because they pave the way to investigate nonequilibrium dynamics in highly uniform plasmonic nanostructures at the time and space limits.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

LevSeq: Rapid Generation of Sequence-Function Data for Directed Evolution and Machine Learning

Sequence-function data provides valuable information about the protein functional landscape but is rarely obtained during directed evolution campaigns. Here, we present Long-read every variant Sequencing (LevSeq), a pipeline that combines a dual barcoding strategy with nanopore sequencing to rapidly generate sequence-function data for entire protein-coding genes. LevSeq integrates into existing protein engineering workflows and comes with open-source software for data analysis and visualization. The pipeline facilitates data-driven protein engineering by consolidating sequence-function data to inform directed evolution and provide the requisite data for machine learning-guided protein engineering (MLPE). LevSeq enables quality control of mutagenesis libraries prior to screening, which reduces time and resource costs. Simulation studies demonstrate LevSeq’s ability to accurately detect variants under various experimental conditions. Lastly, we show LevSeq’s utility in engineering protoglobins for new-to-nature chemistry. Widespread adoption of LevSeq and sharing of the data will enhance our understanding of protein sequence-function landscapes and empower data-driven directed evolution.

59 BASIC BIOLOGICAL SCIENCES↗

Strain fields in twisted bilayer graphene

Van der Waals heteroepitaxy allows deterministic control over lattice mismatch or azimuthal orientation between atomic layers to produce long-wavelength superlattices. The resulting electronic phases depend critically on the superlattice periodicity and localized structural deformations that introduce disorder and strain. In this study we used Bragg interferometry to capture atomic displacement fields in twisted bilayer graphene with twist angles < 2°. Nanoscale spatial fluctuations in twist angle and uniaxial heterostrain were statistically evaluated, revealing the prevalence of short-range disorder in moiré heterostructures. By quantitatively mapping strain tensor fields, we uncovered two regimes of structural relaxation and disentangled the electronic contributions of constituent rotation modes. Further, we found that applied heterostrain accumulates anisotropically in saddle-point regions, generating distinctive striped strain phases. Our results establish the reconstruction mechanics underpinning the twist-angle-dependent electronic behaviour of twisted bilayer graphene and provide a framework for directly visualizing structural relaxation, disorder and strain in moiré materials.

36 MATERIALS SCIENCE↗

Interferometer for Observing Compressible Flow

Moving pictures show changing flow-field contours. Optical interferometer enables instantaneous visualization of compressible fluid flows. Relatively immune to vibration, unit suited to observation of flows over models in large wind tunnels. In improved point-diffraction interferometer, reference beam generated by pinhole (point) diffraction at place in object beam outside experimental volume. Object under test positioned so interior or supporting stand lies in shadows of turning mirrors.

Bacnalo, W.↗

Ground evaluation of seeding an in-flight wingtip vortex using infrared imaging flow visualization technique

An experimental simulation of an in-flight wingtip vortical flow visualization technique uses infrared imaging to observe strong and concentrated vortices. This experiment is phase 1 of a two-phase infrared evaluation program. The system includes a vortex generator (model 320 Vortec Vortex Tube) which generates the required vortex. The mouth of the unit is mounted close to the free end of a half-inch diameter, sixteen and a half foot long stainless steel tubing (sized after tubing currently installed in the wings of an experimental Beechcraft Sundowner 180 aircraft). Dichloro difluoromethane (Freon-12) is entrained into the generated vortex. A breakdown of the vortices is indicated by the rapid diffusion and the resulting pattern is tracked using the infrared imager and video systems. Flow rates (volume and mass) are estimated at the laboratory and proposed flight conditions. The nominal flight altitude is expected to be 2500 feet.

Akinyanju, Ted↗

Experiments on shock/vortex interactions

The interaction between a shock wave and a supersonic streamwise vortex is a fundamental fluid-dynamics problem with numerous practical applications. This paper describes an experimental study of this phenomenon. In particular, supersonic streamwise vortices of varying strength and Mach number were generated and measured using five-hole and total-temperature probes. In addition, the interactions between a vortex and either an oblique or a normal shock wave were visualized using schlieren and planar-laser-scattering techniques. The mean-flow measurements show both similarities and differences between the supersonic streamwise vortex and its incompressible counterpart, while the flow-visualization results show that the shock/vortex interaction is always unsteady and that, under certain conditions, the vortex can burst. The conditions necessary for supersonic vortex breakdown are presented.

Cattafesta, L. N., III↗

Smoke detection in low-G fires

Fires in spacecraft are considered a credible risk. To respond to this risk, NASA flew fire detectors on Skylab and the Space Shuttle (STS) and included them in the design for International Space Station Alpha (ISSA). In previous missions (Mercury, Gemini and Apollo), the crew quarters were so cramped that it was not considered credible that the astronauts could fail to observe a fire. The Skylab nodule included approximately 20 UV fire detectors. The space shuttle has 9 ionization detectors in the mid deck and flight deck and Spacelab has six additional ionization detectors. The planned detectors for ISSA are laser-diode, forward-scattering, smoke or particulate detectors. Current plans for the ISSA call for two detectors in the open area of the module and detectors in racks that have both cooling air flow and electrical power. Due to the complete absence of data concerning the nature of particulate and radiant emission from low-g fires, all three of these detector systems were designed based upon 1-g test data. As planned mission durations and complexity increase and the volume of spacecraft increases, the need for and importance of effective, crew independent, fire detection grows significantly. This requires more knowledge concerning low-gravity fires and how they might be detected. To date, no combustion-generated particulate samples have been collected for well-developed microgravity flames. All of the extant data come from drop tower tests and therefore only correspond to the early stages of a fire. The fuel sources were restricted to laminar gas-jet diffusion flames and rapidly overheated wire insulation. These gas-jet drop tower tests indicate, through thermophoretic sampling, that soot primaries and aggregates (groups of primary particles) in micro-g may be significantly larger than those in normal-g (ng). This raises new scientific questions about soot processes as well as practical issues for particulate detection/alarm threshold levels used in on-orbit smoke detectors. Furthermore, it is widely speculated but unverified that the aggregates will grow to very large scales in a microgravity fire of longer duration than available on the ground. Preliminary tests in the 2.2 second drop tower suggest that particulate generated by overheated wire insulation will also be larger in microgravity than in normal gravity. TEM grids downstream of the fire region in the WIF experiment as well as visual observation of long string-like aggregates, further confirm this suggestion. The combined impact of these limited results and theoretical predictions is that direct knowledge of low-g combustion particulate as opposed to extrapolation from 1-g data is needed for a more confident design of smoke detectors for spacecraft.

Urban, David L.↗

CAPRI (Computational Analysis PRogramming Interface): A Solid Modeling Based Infra-Structure for Engineering Analysis and Design Simulations

CAPRI is a CAD-vendor neutral application programming interface designed for the construction of analysis and design systems. By allowing access to the geometry from within all modules (grid generators, solvers and post-processors) such tasks as meshing on the actual surfaces, node enrichment by solvers and defining which mesh faces are boundaries (for the solver and visualization system) become simpler. The overall reliance on file 'standards' is minimized. This 'Geometry Centric' approach makes multi-physics (multi-disciplinary) analysis codes much easier to build. By using the shared (coupled) surface as the foundation, CAPRI provides a single call to interpolate grid-node based data from the surface discretization in one volume to another. Finally, design systems are possible where the results can be brought back into the CAD system (and therefore manufactured) because all geometry construction and modification are performed using the CAD system's geometry kernel.

Haimes, Robert↗

A Study on the Effect of Communication Performance on Message-Passing Parallel Programs: Methodology and Case Studies

From a source-program perspective, the performance achieved on distributed/parallel systems is governed by the underlying message-passing library overhead and the network capabilities of the architecture. Studying the impact of changes in these features on the source-program. can have a significant influence in the development of next-generation system designs. In this paper we introduce a simple and robust tool that can be used for this purpose. This tool is based on event-driven simulation of programs that generates a new set of trace events - that preserves causality and partial order - corresponding to the expected execution of the program in the simulated environment. Trace events can be visualized and source-level profile information can be used to pin-point locations of program which are most significantly affected with changing system parameters in the simulated environment. We present a number of examples from the NAS benchmark suite, executed on the Intel Paragon and iPSC/860 that are used to identify and expose performance bottlenecks with varying system parameters. Specific aspects of the system that significantly effect these benchmarks are presented and discussed,

Sarukkai, Sekhar R.↗

Information Systems for NASA's Aeronautics and Space Enterprises

The aerospace industry is being challenged to reduce costs and development time as well as utilize new technologies to improve product performance. Information technology (IT) is the key to providing revolutionary solutions to the challenges posed by the increasing complexity of NASA's aeronautics and space missions and the sophisticated nature of the systems that enable them. The NASA Ames vision is to develop technologies enabling the information age, expanding the frontiers of knowledge for aeronautics and space, improving America's competitive position, and inspiring future generations. Ames' missions to accomplish that vision include: 1) performing research to support the American aviation community through the unique integration of computation, experimentation, simulation and flight testing, 2) studying the health of our planet, understanding living systems in space and the origins of the universe, developing technologies for space flight, and 3) to research, develop and deliver information technologies and applications. Information technology may be defined as the use of advance computing systems to generate data, analyze data, transform data into knowledge and to use as an aid in the decision-making process. The knowledge from transformed data can be displayed in visual, virtual and multimedia environments. The decision-making process can be fully autonomous or aided by a cognitive processes, i.e., computational aids designed to leverage human capacities. IT Systems can learn as they go, developing the capability to make decisions or aid the decision making process on the basis of experiences gained using limited data inputs. In the future, information systems will be used to aid space mission synthesis, virtual aerospace system design, aid damaged aircraft during landing, perform robotic surgery, and monitor the health and status of spacecraft and planetary probes. NASA Ames through the Center of Excellence for Information Technology Office is leading the effort in pursuit of revolutionary, IT-based approaches to satisfying NASA's aeronautics and space requirements. The objective of the effort is to incorporate information technologies within each of the Agency's four Enterprises, i.e., Aeronautics and Space Transportation Technology, Earth, Science, Human Exploration and Development of Space and Space Sciences. The end results of these efforts for Enterprise programs and projects should be reduced cost, enhanced mission capability and expedited mission completion.

Kutler, Paul↗

An Interoperable, Agricultural Information System Based on Satellite Remote Sensing Data

Monitoring global agricultural crop conditions during the growing season and estimating potential seasonal production are critically important for market development of US. agricultural products and for global food security. The Goddard Space Flight Center Earth Sciences Data and Information Services Center Distributed Active Archive Center (GES DISC DAAC) is developing an Agricultural Information System (AIS), evolved from an existing TRMM Online Visualization and Analysis System (TOVAS), which will operationally provide satellite remote sensing data products (e.g., rainfall) and services. The data products will include crop condition and yield prediction maps, generated from a crop growth model with satellite data inputs, in collaboration with the USDA Agricultural Research Service. The AIS will enable the remote, interoperable access to distributed data, by using the GrADS-DODS Server (GDS) and by being compliant with Open GIS Consortium standards. Users will be able to download individual files, perform interactive online analysis, as well as receive operational data flows. AIS outputs will be integrated into existing operational decision support systems for global crop monitoring, such as those of the USDA Foreign Agricultural Service and the U.N. World Food Program.

Teng, William↗

Comprehensive Assessment of Models and Events Using Library Tools (CAMEL) Framework: Time Series Comparisons

The Comprehensive Assessment of Models and Events using Library Tools (CAMEL) framework leverages existing Community Coordinated Modeling Center services: Run on Request post processing tools that generate model time series outputs and the new Community Coordinated Modeling Center Metadata Registry that describes simulation runs using Space Physics Archive Search and Extract metadata. The new CAMEL visualization tool compares the modeled time series with observational data and computes a suite of skill scores such as Prediction Efficiency, Root Mean Square Error, and Symmetric Signed Percentage Bias. Model data pairs used for skill calculations are obtained considering a user selected maximum difference between the time of observation and the nearest model output. The system renders available data for all locations and time periods selected using interactive visualizations that allow the user to zoom, pan, and pick data values along traces. Skill scores are reported for each selected event or aggregated over all events for all participating model runs. Separately, scores are reported for all locations (satellites or stations) and for each location individually. We are building on past experiences with model data comparisons of magnetosphere and ionosphere model outputs from GEM2008, GEMCEDAR Electrodynamics Thermosphere Ionosphere, and the SWPC Operational Space Weather Model challenges. The CAMEL visualization tool is demonstrated using three validation studies: (a) Wang Sheeley Arge heliosphere simulations compared against OMNI solar wind data, (b) ground magnetic perturbations from several magnetosphere and ionosphere electrodynamics models as observed by magnetometers, and (c) electron fluxes from several ring current simulations compared to Radiation Belt Storm Probes Helium Oxygen Proton Electron instrument measurements, integrated over different energy ranges.

Rastätter, Lutz↗

AstroAmpSeq: Microbial Bioinformatics Education with NASA GeneLab’s Amplicon Pipeline

The prevalence and importance of large sequencing datasets in microbiology has led to a movement to share microbial ecology experimental data through open-access databases. This is particularly true of experiments that are difficult to replicate, such as those conducted in the spaceflight environment and shared via NASA GeneLab. It is now possible and indeed valuable for students to access and re-analyze these shared datasets for educational and research purposes. To provide students with experience utilizing microbial bioinformatics tools, GeneLab for Colleges and Universities (GL4U) has designed AstroAmpSeq, a week-long, virtually implemented project-based learning (PBL) minicourse to instruct undergraduate students on 16S amplicon sequencing. AstroAmpSeq was created to be accessible to students without prior bioinformatics or microbial ecology experience. During the minicourse students work in teams to process, analyze, and visualize a subsample of GeneLab dataset GLDS-280 using GeneLab’s standard amplicon processing pipeline, which is based in R. Students develop a hypothesis related to the dataset then generate and analyze figures to evaluate their hypothesis. Formative assessment of student learning is determined via pre- and post-evaluations, peer feedback, and self-reflection. Project and presentation rubrics serve as a summative assessment of student learning. GL4U AstroAmpSeq not only meets American Society for Microbiology Curriculum Guidelines, but also incites student interest in research by an inquiry-based approach and can be made part of a larger semester-long curriculum. GL4U AstroAmpSeq raises awareness of space microbiology and bioinformatics as a field and career path among undergraduates. Further, by using a GeneLab dataset and nesting microbiology techniques into the real-world application of space biology, AstroAmpSeq enforces deeper and longer-lasting student learning.

microbiology↗

Focused‐beam X‐ray fluorescence and diffraction microtomographies for mineralogical and chemical characterization of unsectioned extraterrestrial samples

Abstract This study describes the application of new synchrotron X‐ray fluorescence (XRF) and diffraction (XRD) microtomographies for the 3‐D visualization of chemical and mineralogical variations in unsectioned extraterrestrial samples. These improved methods have been applied to three compositionally diverse chondritic meteorite samples that were between 300 and 400 μm in diameter, including samples prepared from fragments of the CR2 chondrite LaPaz Icefield (LAP) 02342, H5 chondrite MacAlpine Hills (MAC) 88203, and the CM2 chondrite Murchison. The synchrotron‐based XRF and XRD tomographies used are focused‐beam techniques that measure the intensities of fluorescent and diffracted X‐rays in a sample simultaneously during irradiation by a high‐energy microfocused incident X‐ray beam. Measured sinograms of the emitted and diffracted intensities were then tomographically reconstructed to generate 2‐D slices of XRF and XRD intensity through the sample, with reconstructed pixel resolution of 1–2 μm, defined by the resolution of the focused incident X‐ray beam. For sample LAP 02342, primary mineral phases that were visualized in reconstructed slices using these techniques included isolated grains of α‐Fe, orthopyroxene, and olivine. For our sample of MAC 88203, XRF/XRD tomography allowed visualization of forsteritic olivine as a primary mineral phase, a vitrified fusion crust at the sample surface, identification of localized Cr‐rich spinels at spatial resolutions of several micrometers, and imaging of a plagioclase‐rich glassy matrix. In the sample of Murchison, major identifiable phases include clinoenstatite‐ and olivine‐rich chondrules, variable serpentine matrix minerals and small Cr‐rich spinels. Most notable in the tomographic analysis of Murchison is the ability to quantitatively distinguish and visualize the complex mixture of serpentine‐group minerals and associated tochilinite–cronstedtite intergrowths. These methods provide new opportunities for spatially resolved characterization of sample texture, mineralogy, crystal structure, and chemical state in unsectioned samples. This provides researchers an ability to characterize such samples internally with minimal disruption of sample micro‐structures and chemistry, possibly without the need for sample extraction from some types of sampling and capture media.

Geochemistry & Geophysics↗

Perspectives on Microfluidics for the Study of Asphaltenes in Upstream Hydrocarbon Production: A Minireview

The utilization of microfluidics has generated deep insights into asphaltene precipitation mechanisms and oil–water emulsion stabilization. Agglomeration and precipitation of asphaltenes can cause flow assurance problems during the extraction and transportation of crude oil. Change in temperature, pressure, reservoir conditions, and solvents can change the local environment, leading to asphaltene precipitation. Understanding asphaltene properties and precipitation pathways becomes critical in devising mitigation methods, demulsifiers, and suitable conditions during hydrocarbon processing. Microfluidics has helped in high throughput measurement studies, understanding critical processing conditions, fast demulsifier screening, and the effect of solvent concentration on deposition, generating useful information for utilization at the point of resource extraction facilitating improved resource management. It has become possible to capture the porous, complex nature of reservoir formations and the interaction of chemicals during precipitation through integrated analytics and visualization studies available only through microfluidics. The use of droplet microfluidics, with optical microscopy and high-speed imaging to study the oil–water interface, has resulted in greater understanding of the role of asphaltenes in interfacial properties and emulsion stabilization. Here, this minireview highlights the crucial aspects of microfluidics that have been used to understand physicochemical behavior and dynamics of asphaltene deposition. Some of the unique devices have been presented focusing on the key elements of microfluidics design, fabrication, and analysis, as the insight obtained from microfluidics strongly depends on the device design and the controllability of the experimental parameters. Successful implementation of microfluidics for efficient and controlled experiments, short analysis time scales and rapid screening, and generation of high-quality, reliable data that convey asphaltene deposition issues and interface behavior in emulsions shows the importance of microsystems for advancing knowledge in hydrocarbon production and processing.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The Advantages of Synergy-Quantitative Earth Science Data Visualization and Analysis with Giovanni, Panoply, and Excel

The NASA Giovanni data analysis system provides a multitude of basic analysis capabilities for numerous Earth science data products which are available in the NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) archive, as well as for additional selected data products provided by other NASA Distributed Active Archive Center (DAAC) archives. In Giovanni, users can easily generate time-averaged data maps, area-averaged time-series, Latitude-Time and Longitude-Time Hovmoeller diagrams, correlation maps, accumulation maps, and map animations (22 analysis options are available in total). While ASCII text output is available for time-series plots, it is not included as an option for data maps. In order to provide a quantitative, easy-to-use numerical output in ASCII text form, the NetCDF file output from a Giovanni visualization is downloaded and then opened with the free NASA visualization software package Panoply. Panoply provides the capability of translating the Giovanni file into comma-separated-variable (CSV) output. Panoply also provides additional visualization options, including the facile calculation of difference maps and quasi-anomaly maps using Giovanni output files. The CSV files from Panoply can then be imported into an Excel spreadsheet, where an Excel macro converts the CSV files. The output consists of latitude-longitude-data value triads in text form for maps, and either longitude-time-data value or latitude-time-data value triads in text form for Hovmoeller diagrams. This presentation will explicate the basic procedure for the conversion, and then provide several examples where the procedure is applied to Giovanni output from different analysis options.

Earth science↗

Recent Advances in Visualizing 3D Flow with LIC

Line Integral Convolution (LIC), introduced by Cabral and Leedom in 1993, is an elegant and versatile technique for representing directional information via patterns of correlation in a texture. Although most commonly used to depict 2D flow, or flow over a surface in 3D, LIC methods can equivalently be used to portray 3D flow through a volume. However, the popularity of LIC as a device for illustrating 3D flow has historically been limited both by the computational expense of generating and rendering such a 3D texture and by the difficulties inherent in clearly and effectively conveying the directional information embodied in the volumetric output textures that are produced. In an earlier paper, we briefly discussed some of the factors that may underlie the perceptual difficulties that we can encounter with dense 3D displays and outlined several strategies for more effectively visualizing 3D flow with volume LIC. In this article, we review in more detail techniques for selectively emphasizing critical regions of interest in a flow and for facilitating the accurate perception of the 3D depth and orientation of overlapping streamlines, and we demonstrate new methods for efficiently incorporating an indication of orientation into a flow representation and for conveying additional information about related scalar quantities such as temperature or vorticity over a flow via subtle, continuous line width and color variations.

Interrante, Victoria↗