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At least 1,171 records · Page 65

Likelihood Maximization and Moment Matching in Low SNR Gaussian Mixture Models

We derive an asymptotic expansion for the log-likelihood of Gaussian mixture models (GMMs) with equal covariance matrices in the low signal-to-noise regime. The expansion reveals an intimate connection between two types of algorithms for parameter estimation: the method of moments and likelihood optimizing algorithms such as Expectation-Maximization (EM). We show that likelihood optimization in the low SNR regime reduces to a sequence of least squares optimization problems that match the moments of the estimate to the ground truth moments one by one. This connection is a stepping stone towards the analysis of EM and maximum likelihood estimation in a wide range of models. A motivating application for the study of low SNR mixture models is cryo-electron microscopy data, which can be modeled as a GMM with algebraic constraints imposed on the mixture centers. We discuss the application of our expansion to algebraically constrained GMMs, among other example models of interest. © 2022 The Authors. Communications on Pure and Applied Mathematics published by Wiley Periodicals LLC.

97 MATHEMATICS AND COMPUTING↗

Bemnifosbuvir: An HCV NS5B Inhibitor With Multiple Modes of Action

Bemnifosbuvir (BEM) is a potent, pan-genotypic inhibitor targeting the hepatitis C virus (HCV) NS5B polymerase. Its antiviral activity was evaluated in an ascending dose phase I clinical trial involving 30 patients treated once a day for 7 days. After treatment initiation, plasma HCV RNA declined in a biphasic manner with a mean reduction of 2.3 log 10 IU/mL after 24 hours and 4.4 log10 IU/mL by day 7 for the highest dose. Alanine aminotransferase (ALT) also normalized in most patients. We employed a multiscale mathematical model fitted to the HCV RNA and ALT dynamics to quantify the antiviral activity and evaluate the modes of action of BEM. We found that models in which BEM only acted as a typical HCV RNA polymerase inhibitor and reduced the intracellular production of HCV RNA did not fit the data as well as models in which BEM had multiple modes of action, including suppressing viral assembly and secretion and enhancing intracellular HCV RNA degradation. BEM's effectiveness in inhibiting intracellular HCV RNA production increased with dose (150 mg/day: 88.2%, 300 mg/day: 98.8%, 600 mg/day: 99.5%), while inhibition of viral assembly and release was ~95% effective regardless of dose. We observed a dose-dependent enhancement in the degradation of intracellular HCV RNA, with degradation rates 1.5-fold higher in patients receiving 300 mg/day and 2.7-fold higher in those receiving 600 mg/day than in patients receiving 150 mg/day. No significant differences in antiviral activity were detected between HCV genotypes 1b and 3 or between patients with and without compensated cirrhosis.

59 BASIC BIOLOGICAL SCIENCES↗

Benchmark Dose Analysis of DNA Damage Biomarker Responses Provides Compound Potency and Adverse Outcome Pathway Information for the Topoisomerase II Inhibitor Class of Compounds

Genetic toxicology data have traditionally been utilized for hazard identification to provide a binary call for a compound's risk. Recent advances in the scientific field, especially with the development of high‐throughput methods to quantify DNA damage, have influenced a change of approach in genotoxicity assessment. The in vitro MultiFlow® DNA Damage Assay is one such method which multiplexes γH2AX, p53, phospho‐histone H3 biomarkers into a single‐flow cytometric analysis (Bryce et al., [2016]: Environ Mol Mutagen 57:546–558). This assay was used to study human TK6 cells exposed to each of eight topoisomerase II poisons for 4 and 24 hr. Using PROAST v65.5, the Benchmark Dose approach was applied to the resulting flow cytometric datasets. With “compound” serving as covariate, all eight compounds were combined into a single analysis, per time point and endpoint. The resulting 90% confidence intervals, plotted in Log scale, were considered as the potency rank for the eight compounds. The in vitro MultiFlow data showed a maximum confidence interval span of 1Log, which indicates data of good quality. Patterns observed in the compound potency rank were scrutinized by using the expert rule‐based software program Derek Nexus, developed by Lhasa Limited. Compound sub‐classification and structural alerts were considered contributory to the potencies observed for the topoisomerase II poisons studied herein. The Topo II poison Adverse Outcome Pathway was evaluated with MultiFlow endpoints serving as Key Events. The step‐wise approach described herein can be considered as a foundation for risk assessment of compounds within a specific mode of action of interest. Environ. Mol. Mutagen. 2020. © 2020 Wiley Periodicals, Inc.

Wheeldon, Ryan P.↗

Leveraging operational information from wastewater injection wells to evaluate CO 2 injection performance for carbon storage applications in the Appalachian Basin

Abstract Geologic parameters, geophysical logging, injection testing, and operational metrics from wastewater injection wells were integrated to develop a preliminary design of a carbon storage facility in the Appalachian Basin. A scattered group of 10–20 commercial wastewater injection wells dispose off produced water from oil and gas wells in the region, utilizing a sequence of stacked deep saline formations for injection zones. These wastewater injection wells provide practical benchmarks for understanding the feasibility of carbon dioxide (CO 2 ) storage. Geologic models were developed based on characterization data from the wastewater injection wells. Reservoir simulations were calibrated according to injection testing and operational data from the wastewater injection wells. Long‐term operational data on injection flow rates and pressures measured in the wastewater injection wells were especially useful to evaluate the performance of carbon storage applications. The simulations were used to estimate injection pressures, radius of CO 2 saturation, and pressure response for industrial scale CO 2 storage applications. Results were also used to provide a design basis in terms of number of injection wells, well spacing, area of review, injection system components, monitoring plan, and CO 2 pipeline distribution system. The analysis demonstrates that there is sufficient injectivity in the deep saline formations in the west‐central Appalachian Basin to store commercial volumes of anthropogenic CO 2 . The geologic system appears suitable for supporting CO 2 injection rates of 0.5–1.0 million metric tons per year at injection pressures below formation fracture pressure in a single well. The long‐term operational data of wastewater injection wells within the study area suggested a lower permeability‐thickness values than indicated by initial reservoir tests. A workflow for developing realistic permeability values for input into reservoir simulations is presented. © 2020 Society of Chemical Industry and John Wiley & Sons, Ltd.

Valluri, Manoj↗

Time-lapse VSP integration and calibration of subsurface stress field utilizing machine learning approaches: A case study of the morrow B formation, FWU

This study aims to develop a methodology for calibrating subsurface stress changes through time-lapse vertical seismic profiling (VSP) integration. The selected study site is a region around the injector well located within Farnsworth field unit (FWU), where there is an ongoing CO 2 -enhanced oil recovery (EOR) operation. In our study, a site-specific rock physics model was created from extensive geological, geophysical, and geomechanical characterization through 3D seismic data, well logs, and core assessed as part of the 1D MEM conducted on the characterization well within the study area. Here, the Biot-Gassmann workflow was utilized to combine the rock physics and reservoir simulation outputs to determine the seismic velocity change due to fluid substitution. Modeled seismic velocities attributed to mean effective stress were determined from the geomechanical simulation outputs, and the stress-velocity relationship developed from ultrasonic seismic velocity measurements. A machine learning-assisted workflow comprised of an artificial neural network and a particle swarm optimizer (PSO) was utilized to minimize a penalty function created between the modeled seismic velocities and the observed time-lapse VSP dataset. The successful execution of this workflow has affirmed the suitability of acoustic time-lapse measurements for 4D-VSP geomechanical stress calibration pending measurable stress sensitivities within the anticipated effective stress changes and the availability of suitable and reliable datasets for petroelastic modeling. © 2023 Society of Chemical Industry and John Wiley & Sons, Ltd.

58 GEOSCIENCES↗

A semi–automatic analytical methodology for characterizing the energy consumption of MRI systems using load duration curves

Background and purpose: Magnetic resonance imaging (MRI) scanners are a major contributor to greenhouse gas emissions from the healthcare sector, and efforts to improve energy efficiency and reduce energy consumption rely on quantification of the characteristics of energy consumption. The purpose of this work was to develop a semi-automatic analytical methodology for the characterization of the energy consumption of MRI systems using only the load duration curve (LDC). LDCs are a fundamental tool used across various fields to analyze and understand the behavior of loads over time. Methods: An electric current transformer sensor and data logger were installed on two 3T MRI scanners from two vendors, termed M1 (outpatient scanner) and M2 (inpatient/emergency scanner). Data was collected for 1 month (7/11/2023 to 8/11/2023). Active power was calculated, assuming a balanced three-phase system, using the average current measured across all three phases, a 480 V reference voltage for both machines, and vendor-provided power factors. An LDC was constructed for each system by sorting the active power values in descending order and computing the cumulative time (in units of percentage) for each data point. The first derivative of the LDC was then computed (LDC’), smoothed by convolution with a window function (sLDC’), and used to detect transitions between different system modes including (in descending power levels): scan, prepared-to-scan, idle, low-power, and off. The final, segmented LDC was used to measure time (% total time), total energy (kWh), and mean power (kW) for each system mode on both scanners. The method was validated by comparing mean power values, computed using the segmented 1-month LDC, for each nonproductive system mode (i.e., prepared-to-scan, idle, lower-power, and off) against power levels measured after a deliberate system shutdown was performed for each scanner (1 day worth of data). Results: The validation revealed differences in mean power values <1.4% for all nonproductive modes and both scanners. In the scan system mode, the mean power values ranged from 29.8 to 37.2 kW and the total energy consumed for 1 month ranged from 11 106 to 14 466 kWh depending on the scanner. Over the course of 1 month, the portion of time the scanners were in nonproductive modes ranged from 76% to 80% across scanners and the nonproductive energy consumption ranged from 8010 to 6722 kWh depending on the scanner. The M1 (outpatient) scanner consumed 99.9 and 183.9 kWh/day in idle mode for weekdays and weekends, respectively, because the scanner spent 23% more time proportionally in idle mode on the weekends. Conclusions: A semi-automatic method for quantifying energy consumption characteristics of MRI scanners was introduced and validated. This method is relatively simple to implement as it requires only power data from the scanners and avoids the technical challenges associated with extracting and processing scanner log files. Finally, the methodology enables quantitative evaluation of the power, time, and energy characteristics of MRI scanners in scan and nonproductive system modes, providing baseline data and the capability of identifying potential opportunities for enhancing the energy efficiency of MRI scanners.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Synthesizing realistic sand assemblies with denoising diffusion in latent space

Abstract The shapes and morphological features of grains in sand assemblies have far‐reaching implications in many engineering applications, such as geotechnical engineering, computer animations, petroleum engineering, and concentrated solar power. Yet, our understanding of the influence of grain geometries on macroscopic response is often only qualitative, due to the limited availability of high‐quality 3D grain geometry data. In this paper, we introduce a denoising diffusion algorithm that uses a set of point clouds collected from the surface of individual sand grains to generate grains in the latent space. By employing a point cloud autoencoder, the three‐dimensional point cloud structures of sand grains are first encoded into a lower‐dimensional latent space. A generative denoising diffusion probabilistic model is trained to produce synthetic sand that maximizes the log‐likelihood of the generated samples belonging to the original data distribution measured by a Kullback‐Leibler divergence. Numerical experiments suggest that the proposed method is capable of generating realistic grains with morphology, shapes and sizes consistent with the training data inferred from an F50 sand database. We then use a rigid contact dynamic simulator to pour the synthetic sand in a confined volume to form granular assemblies in a static equilibrium state with targeted distribution properties. To ensure third‐party validation, 50,000 synthetic sand grains and the 1542 real synchrotron microcomputed tomography (SMT) scans of the F50 sand, as well as the granular assemblies composed of synthetic sand grains are made available in an open‐source repository.

Vlassis, Nikolaos N.↗

Automated detection of photovoltaic cleaning events: A performance comparison of techniques as applied to a broad set of labeled photovoltaic data sets

Extracting accurate soiling loss information from photovoltaic (PV) production data first requires segmenting the time series data per natural or manually occurring cleaning events. Maintenance logs are often incomplete, rain data are often unavailable, and the debate on rain thresholds for cleaning and dew or wind cleanings is still ongoing. The present work aims to overtake these issues by improving automated methods to detect these cleaning events and therefore improve extraction of soiling loss information. Time series power production data from 22 PV inverters were labeled for natural or manually occurring cleaning events. The data sets were carefully selected to include varying degrees of soiling, cleaning events, and noise. Several algorithms, including filtering logic and change point detection, were examined for efficacy at detecting the labeled cleanings. All the methods introduced except for changepoint detection showed significant improvement at detecting the labeled cleaning events per the mean F 1 score. Furthermore, the highest performing cleaning detection algorithm achieved an absolute increase in the mean F 1 score of 43% over the default version of the RdTools stochastic rate and recovery (SRR) algorithm. The highest performing algorithm included irradiance filtering and a cleaning detection threshold, adjusted based on the 40-day centered rolling median of the absolute day-to-day deviations in the daily performance index (PI). Furthermore, these improvements are promising as cleaning detection is an essential step in the automated analysis of PV soiling.

14 SOLAR ENERGY↗

Depyrogenation using plasmas: A novel approach for endotoxin deactivation using a dielectric barrier discharge at atmospheric pressure

Developing a low-cost depyrogenation process is vital in extending the medical applicability of polymers that can be used in medicine. We present an overview of the plasma-based depyrogenation literature and address the need to develop a nonthermal plasma-based depyrogenation process for delicate materials such as chitosan. We present a low-cost plasma apparatus to treat chitosan powder in hermetically sealed bags. We decouple the experiments into two parts: depyrogenation experiments for dried standard endotoxin on glass slides and analysis of chitosan modifications through Fourier-transform infrared spectroscopy. We demonstrate depyrogenation efficacy with up to a 4-log reduction in endotoxin levels and discuss minor changes observed in plasma-treated chitosan.

atmospheric pressure plasmas↗

Framework for assessing land‐management effects on at‐risk species: Example of SE USA wood pellet production and gopher tortoise ( Gopherus polyphemus )

Abstract Land‐management choices made for economic and societal gains intrinsically influence landscapes and species that are dependent upon them. We propose a simple analysis framework to examine critical intersections between land‐management choices and the life‐history conditions of selected species of concern, thereby facilitating the identification of mitigation practices that can reduce negative impacts on species at risk. We test the proposed framework through application to gopher tortoise ( Gopherus polyphemus ), a keystone species that is the focus of conservation efforts across the southeastern region of United States of America, where wood pellets are being produced for bioenergy. Production of these wood pellets for export to Europe and Asia has drastically increased in the past decade, raising concerns about potential harm to biodiversity since many species in the forests sourcing pellet production were already at risk prior to the development of this new commodity. Identifying the mechanisms of potential impacts of wood pellet production on species of concern is essential to establishing meaningful management recommendations that can enhance conservation efforts while supporting sustainable bioenergy. By considering the intersections between life‐history conditions of gopher tortoise and forest‐management practices related to woody biomass extraction for pellet production, we identify several mechanisms by which the wood‐pellet industry might affect this species of concern, both positively and negatively. We then identify mitigation practices that can help offset the potential impacts of logging, thinning, and dead wood removal on gopher tortoise. Our analysis framework may be transferable to other species of concern and land‐management practices across diverse landscapes. This article is categorized under: Bioenergy > Economics and Policy Bioenergy > Climate and Environment

54 ENVIRONMENTAL SCIENCES↗

Usage Pattern Analysis for the Summit Login Nodes

High performance computing (HPC) users interact with Summit through dedicated gateways, also known as login nodes. The performance and stability of these login nodes can have a significant impact on the user experience. In this study, the performance and stability of Summit’s five login nodes are evaluated by analyzing the log data from 2020 and 2021. The analysis focuses on the computing capability (CPU average load, users and tasks) and the storage performance, along with the associated job scheduler activity. The outcome of this study can serve as the foundation of a predictive modeling framework that enables the system admin of an HPC system to preemptively deploy countermeasures before the onset of a system failure.

Eiffert, Brett↗

Renormalon cancellation and linear power correction to threshold-like asymptotics of space-like parton correlators

Abstract In this paper, we show that the common hard kernel of double-log-type or threshold-type factorization for certain space-like parton correlators that arise in the context of lattice parton distributions, theheavy-light Sudakov hard kernel, has linear infrared (IR) renormalon. We explicitly demonstrate how this IR renormalon correlates with ultraviolet (UV) renormalons of next-to-leading power operators in two explicit examples: threshold asymptotics of space-like quark-bilinear coefficient functions and transverse momentum dependent (TMD) factorization of quasi wave function amplitude. Theoretically, the pattern of renormalon cancellation complies with general expectations to marginal asymptotics in the UV limit. Practically, this linear renormalon explains the slow convergence of imaginary parts observed in lattice extraction of the Collins-Soper kernel and signals the relevance of next-to-leading power contributions. Fully factorized, fully controlled threshold asymptotic expansion for space-like quark-bilinear coefficient functions in coordinate and moment space has also been proposed.

Physics↗

Testing real WIMPs with CTAO

We forecast the reach of the upcoming Cherenkov Telescope Array Observatory (CTAO) to the full set of real representations within the paradigm of minimal dark matter. We employ effective field theory techniques to compute the annihilation cross section and photon spectrum that results when fermionic dark matter is the neutral component of an arbitrary odd and real representation of SU(2), including the Sommerfeld enhancement, next-to-leading log resummation of the relevant electroweak effects, and the contribution from bound states. We also compute the corresponding signals for scalar dark matter, with the exception of the bound state contribution. Results are presented for all real representations from the ~ 3 TeV triplet (or wino), a 3 of SU(2), to the ~ 300 TeV tredecuplet, a 13 of SU(2) that is at the threshold of the unitarity bound. Using these results, we forecast that with 500 hrs of Galactic Center observations and assuming background systematics are controlled at the level of $\mathcal{(O)}$(1%), then should no signal emerge, CTAO could exclude all representations up to the 11 of SU(2) in even the most conservative models for the dark-matter density in the inner galaxy, in both the fermionic and scalar dark matter cases. Assuming the default CTAO configuration, the tredecuplet will marginally escape exclusion, although we outline steps that CTAO could take to test even this scenario. In summary, CTAO appears poised to make a definitive statement on whether real WIMPs constitute the dark matter of our universe.

Models for Dark Matter↗

Rotating black hole entropy from M5-branes

We compute the superconformal index of 3d N = 2 superconformal field theories obtained from N M5-branes wrapped on a hyperbolic 3-manifold. Exploiting the 3d-3d correspondence, we use perturbative invariants of SL(N, C) Chern-Simons theory to determine the superconformal index in the large N limit, including corrections logarithmic in N. The leading order partition function provides a microscopic foundation for the entropy function of the dual rotating asymptotically AdS 4 black holes. We also verify that the supergravity one-loop contribution to the log N term coincides with the field theoretic result. We propose a 3d-3d formulation for the refined topologically twisted index, and provide strong evidence in support of its vanishing — which agrees with the fact that the expected dual rotating magnetically-charged black hole does not exist. This provides an interesting link between gravity and a tantalizing mathematical result.

79 ASTRONOMY AND ASTROPHYSICS↗

Precision microstate counting for the entropy of wrapped M5-branes

We study the large N expansion of twisted partition functions of 3d N = 2 superconformal field theories arising from N M5-branes wrapped on a hyperbolic 3- manifold, M 3 . Via the 3d-3d correspondence, the partition functions of these 3d N = 2 superconformal field theories are related to simple topological invariants on the 3-manifold. The partition functions can be expressed using only classical and one-loop perturbative invariants of PSL(N, C) Chern-Simons theory around irreducible flat connections on M 3 . Using mathematical results on the asymptotics of the invariants, we compute the twisted partition functions in the large N limit including perturbative corrections to all orders in 1/N . Surprisingly, the perturbative expansion terminates at finite order. The leading part of the partition function is of order N 3 and agrees with the Bekenstein-Hawking entropy of the dual black holes. The subleading part, in particular the log N -terms in the field theory partition function is found to precisely match the one-loop quantum corrections in the dual eleven dimensional supergravity. The field theory results of other terms in 1/N provide a stringent prediction for higher order corrections in the holographic dual, which is M-theory.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Radiative natural supersymmetry emergent from the string landscape

In string theory with flux compactifications, anthropic selection for structure formation from a discretuum of vacuum energy values provides at present our only understanding of the tiny yet positive value of the cosmological constant. We apply similar reasoning to a toy model of the multiverse restricted to vacua with the MSSM as the low energy effective theory. Here, one expects a statistical selection favoring large soft SUSY breaking terms leading to a derived value of the weak scale in each pocket universe (with appropriate electroweak symmetry breaking) which differs from the weak scale as measured in our universe. In contrast, the SUSY preserving μ parameter is selected uniformly on a log scale as is consistent with the distribution of SM fermion masses: this favors smaller values of μ. An anthropic selection of the weak scale to within a factor of a few of our measured value — in order to produce complex nuclei as we know them (atomic principle) — provides statistical predictions for Higgs and sparticle masses in accord with LHC measurements. The statistical selection then more often leads to (radiatively-driven) natural SUSY models over the Standard Model or finely-tuned SUSY models such as mSUGRA/CMSSM, split, mini-split, spread, high scale or PeV SUSY. The predicted Higgs and superparticle spectra might be testable at HL-LHC or ILC via higgsino pair production but is certainly testable at higher energy hadron colliders with $ \sqrt{s}$ ~ 30–100 TeV.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

The great escape: tunneling out of microstate geometries

We compute the quasi-normal frequencies of scalars in asymptotically-flat microstate geometries that have the same charge as a D1-D5-P black hole, but whose long BTZ-like throat ends in a smooth cap. In general the wave equation is not separable, but we find a class of geometries in which the non-separable term is negligible and we can compute the quasi-normal frequencies using WKB methods. We argue that our results are a universal property of all microstate geometries with deeply-capped BTZ throats. These throats generate large redshifts, which lead to exceptionally-low-energy states with extremely long decay times, set by the central charge of the dual CFT to the power of twice the dimension of the operator dual to the mode. While these decay times are extremely long, we also argue that the energy decay is bounded, at large t , by (log( t )) – 2 and is comparable with the behavior of ultracompact stars, as one should expect for microstate geometries.

79 ASTRONOMY AND ASTROPHYSICS↗