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At least 1,171 records · Page 65

Bragg Spot Finder (BSF): a new machine-learning-aided approach to deal with spot finding for rapidly filtering diffraction pattern images

Macromolecular crystallography contributes significantly to understanding diseases and, more importantly, how to treat them by providing atomic resolution 3D structures of proteins. This is achieved by collecting X-ray diffraction images of protein crystals from important biological pathways. Spotfinders are used to detect the presence of crystals with usable data, and the spots from such crystals are the primary data used to solve the relevant structures. Having fast and accurate spot finding is essential, but recent advances in synchrotron beamlines used to generate X-ray diffraction images have brought us to the limits of what the best existing spotfinders can do. This bottleneck must be removed so spotfinder software can keep pace with the X-ray beamline hardware improvements and be able to see the weak or diffuse spots required to solve the most challenging problems encountered when working with diffraction images. In this paper, we first present Bragg Spot Detection (BSD), a large benchmark Bragg spot image dataset that contains 304 images with more than 66 000 spots. We then discuss the open source extensible U-Net-based spotfinder Bragg Spot Finder (BSF), with image pre-processing, a U-Net segmentation backbone, and post-processing that includes artifact removal and watershed segmentation. Finally, we perform experiments on the BSD benchmark and obtain results that are (in terms of accuracy) comparable to or better than those obtained with two popular spotfinder software packages ( Dozor and DIALS ), demonstrating that this is an appropriate framework to support future extensions and improvements.

36 MATERIALS SCIENCE↗

Custom Sky-Image Mosaics from NASA's Information Power Grid

yourSkyG is the second generation of the software described in yourSky: Custom Sky-Image Mosaics via the Internet (NPO-30556), NASA Tech Briefs, Vol. 27, No. 6 (June 2003), page 45. Like its predecessor, yourSkyG supplies custom astronomical image mosaics of sky regions specified by requesters using client computers connected to the Internet. Whereas yourSky constructs mosaics on a local multiprocessor system, yourSkyG performs the computations on NASA s Information Power Grid (IPG), which is capable of performing much larger mosaicking tasks. (The IPG is high-performance computation and data grid that integrates geographically distributed 18 NASA Tech Briefs, September 2005 computers, databases, and instruments.) A user of yourSkyG can specify parameters describing a mosaic to be constructed. yourSkyG then constructs the mosaic on the IPG and makes it available for downloading by the user. The complexities of determining which input images are required to construct a mosaic, retrieving the required input images from remote sky-survey archives, uploading the images to the computers on the IPG, performing the computations remotely on the Grid, and downloading the resulting mosaic from the Grid are all transparent to the user

Jacob, Joseph↗

Brain Connectivity Workshop Series Report

The National Institutes of Health (NIH) BRAIN Initiative aims to accelerate development and application of technologies that show how individual brain cells in complex neural circuits interact at the speed of thought and action. Complete wiring diagrams of the mammalian brain will revolutionize the capabilities of researchers to formulate and test models of how activity within brain circuits drives coordinated function and behavior. A top priority for the BRAIN Initiative, motivated by the strategic guidance of the BRAIN 2.0 Working Group report, is to muster the resources and foster the collaborations needed to generate these wiring diagrams at the level of long-range projections (“projectomes”) and synapses (“connectomes”) in whole mammalian brains, including those from rodents, humans, and other large-brained mammals. Achieving the scale and resolution necessary to characterize and use these projectomes and connectomes will not only push the boundaries of current imaging and computational capabilities to generate faster, cheaper, and more scalable technologies, but also drive broad innovation in data science, artificial intelligence, and machine learning.

42 ENGINEERING↗

Examining Runner’s Outdoor Heat Exposure Using Urban Microclimate Modeling and GPS Trajectory Mining

It is important to quantify human heat exposure in order to evaluate and mitigate the negative impacts of heat on human well-being in the context of global warming. This study proposed a human-centric framework to examine human personal heat exposure based on anonymous GPS trajectories data mining and urban microclimate modeling. The mean radiant temperature (Tmrt) that represents the human body’s energy balance was used to indicate human heat exposure. The meteorological data and high-resolution 3D urban model generated from multispectral remotely sensed images and LiDAR data were used as inputs in urban microclimate modeling to map the spatio-temporal distribution of the Tmrt in the Boston metropolitan area. The anonymous human GPS trajectory data collected from fitness Apps was used to map the spatiotemporal distribution of human outdoor activities. By overlaying the anonymous GPS trajectories on the generated spatio-temporal maps of Tmrt, this study further examined the heat exposure of runners in different age-gender groups in the Boston area. Results show that there is no significant difference in terms of heat exposure for female and male runners. The female runners in the age of 45-54 are exposed to more heat than female runners of 18-24 and 25-34, while there is no significant difference among male runners. This study proposed a novel method to estimate human heat exposure, which would shed new light on mitigating the negative impacts of heat on human health.

Personal heat exposure↗

Multi-angle Imaging SpectroRadiometer (MISR) Experiment Overview

This Experiment Overview is generated in order to summarize in a single document high level information about the Multi-angle Imaging SpectroRadiometer (MISR) instrument, measurement approach, science objectives, and data products.

MISR experiment imaging overview↗

NASA's Next Generation of Atmospheric Data Science

The Multi-Angle Imager for Aerosols (MAIA) and the Tropospheric Emission: Monitoring of Pollution(TEMPO) are NASA’s next-generation satellite missions for air quality monitoring. These missions will produce high-quality, high-resolution air quality data to support cross-displinary research. The MAIA mission is collaborating with health science researchers and epidemiologists to study the impacts of air quality on health outcomes. TEMPO aims to improve our understanding of tropospheric air pollution chemistry and our ability to make predictions about air quality and climate forcing. TEMPO will offer hourly measurements of tropospheric ozone, aerosols, and clouds focused on North America at high-spatial resolution, while MAIA will produce high-resolution measurements of speciated particulate matter targeting densely populated cities around the globe. Data from these missions will help improve our understanding of the sources, types, and interactions among the aerosols and trace gases that are polluting Earth’s atmosphere, as well as our understanding of the impact of air pollution on pollution on a wide range of important areas including human health, agriculture, weather, and climate change. The challenges of cross-disciplinary research, computationally expensive multi-variate analyses, and high-resolution data at both local and global scales are driving substantial changes across all of NASA’s Distributed Active Archive Centers (DAACs). High resolution data at scales such these requires a new approach to data ingest, archive, and publication. Like other NASA DAACs, the Atmospheric Science Data Center (ASDC), the DAAC that will be responsible for publishing MAIA and TEMPO data products has historically archived and distributed data on premise. DAACs of the future will archive and distribute data in the cloud, enabling them to remake themselves as research-focused data centers that will support on-demand, data-intensive computations for highly accurate retrospective analyses and predictions. Under the new paradigm, data formats and metadata must support on-demand spatial and temporal sub-setting, as well as other data transformation services such as re-gridding and re-sampling. This presentation will discuss work being done to address data formatting and metadata requirements in this dynamic new environment. In addition to the changes in data stewardship practices at the ASDC, the increased focus on supporting scientific research is driving changes in the relationship between DAACs and researchers. While the ASDC will continue to provide first rate data management and stewardship, it is increasingly focused on serving as a partner not only to the science teams that gather and produce the data it publishes, but to the researchers that use that data.

Beth Huffer↗

Recognizability of Demographically Altered Computerized Facial Approximations in an Automated Facial Recognition Context for Potential Application in Unidentified Persons Data Repositories

This study examined the recognizability of demographically altered facial approximations for potential utility in unidentified persons tracking systems. Five computer-generated approximations were generated for each of 26 African male participants using the following demographic parameters: (i) African male (true demographics), (ii) African female, (iii) Caucasian male, (iv) Asian male, and (v) Hispanic male. Overall, 62% of the true demographic facial approximations for the 26 African male participants examined were matched to a corresponding life photo within the top 50 images of a candidate list generated from an automated blind search of an optimally standardized gallery of 6159 photographs. When the African male participants were processed as African females, the identification rate was 50%. In contrast, less congruent identification rates were observed when the African male participants were processed as Caucasian (42%), Asian (35%), and Hispanic (27%) males. The observed results suggest that approximations generated using the opposite sex may be operationally informative if sex is unknown. The performance of approximations generated using alternative ancestry assignments, however, was less congruent with the performance of the true demographic approximation (African male) and may not yield as operationally constructive data as sex-altered approximations.

59 BASIC BIOLOGICAL SCIENCES↗

AI-enabled Lorentz microscopy for quantitative imaging of nanoscale magnetic spin textures

The manipulation and control of nanoscale magnetic spin textures are of rising interest as they are potential foundational units in next-generation computing paradigms. Achieving this requires a quantitative understanding of the spin texture behavior under external stimuli using in situ experiments. Lorentz transmission electron microscopy (LTEM) enables real-space imaging of spin textures at the nanoscale, but quantitative characterization of in situ data is extremely challenging. Here, we present an AI-enabled phase-retrieval method based on integrating a generative deep image prior with an image formation forward model for LTEM. Our approach uses a single out-of-focus image for phase retrieval and achieves significantly higher accuracy and robustness to noise compared to existing methods. Furthermore, our method is capable of isolating sample heterogeneities from magnetic contrast, as shown by application to simulated and experimental data. This approach allows quantitative phase reconstruction of in situ data and can also enable near real-time quantitative magnetic imaging.

36 MATERIALS SCIENCE↗

An evaluation of Seasat SAR imagery for urban analysis

Digitally processed Seasat SAR imagery of the Denver, Colorado, area is analyzed with regard to the types of urban data that can be detected and/or inferred from satellite-borne L-band systems. Black-and-white images of the scene were generated at three scales to determine the advantages and detail discernible at each level of display. The large-scale imagery was density-sliced to evaluate the feasibility of producing a semiautomated land-cover classification from the SAR data. Gray level classes were assigned colors to aid interpretation and subsequently compared with the black-and-white images to assess the contribution of each technique and benefits of combining the data from both procedures.

Henderson, F. M.↗

Morphologically-Directed Raman Spectroscopy as an Analytical Method for Subvisible Particle Characterization in Therapeutic Protein Product Quality

Abstract Subvisible particles (SVPs) are a critical quality attribute of injectable therapeutic proteins (TPs) that needs to be controlled due to potential risks associated with drug product quality. The current compendial methods routinely used to analyze SVPs for lot release provide information on particle size and count. However, chemical identification of individual particles is also important to address root-cause analysis. Herein, we introduce Morphologically-Directed Raman Spectroscopy (MDRS) for SVP characterization of TPs. The following particles were used for method development: (1) polystyrene microspheres, a traditional standard used in industry; (2) photolithographic (SU-8); and (3) ethylene tetrafluoroethylene (ETFE) particles, candidate reference materials developed by NIST. In our study, MDRS rendered high-resolution images for the ETFE particles (> 90%) ranging from 19 to 100 μm in size, covering most of SVP range, and generated comparable morphology data to flow imaging microscopy. Our method was applied to characterize particles formed in stressed TPs and was able to chemically identify individual particles using Raman spectroscopy. MDRS was able to compare morphology and transparency properties of proteinaceous particles with reference materials. The data suggests MDRS may complement the current TPs SVP analysis system and product quality characterization workflow throughout development and commercial lifecycle.

Science & Technology - Other Topics↗

Field studies in support of Nimbus-E surface composition mapping radiometer

If the outputs of the two channels are spacially registered and combined to generate a third variable which reflects the differences between the two outputs, then this variable can then be redisplayed in image form and its magnitude should be relatable to the silica content of the rocks imaged. Two methods were proposed for generating this third variable, the first is to take the difference in apparent temperature between the two channels and the second is to ratio the voltage outputs of the two channels. The responses of the two channel high resolution surface composition mapping radiometer and the thermal channels of the MSDS scanner were calculated from data recorded with the NASA IR pallet and simulate the output of these systems had they been flying over the same targets as the IR pallet.

Lyon, R. J. P.↗

Original images, ground truth annotations, and precited masks from U-NET for a fungal species x nitrogen experiment

This document describes the “MicroVision-MV003” dataset. This folder contains three subfolders: “originals”, “predicted_masks”, and “gt_masks”. The “originals” folder contains 720 original images acquired using two imaging modalities: 360 images from overhead imaging and 360 images from transmission (raw) imaging. Naming scheme:YYYY-MM-dd__plate_strain_nitrogen-level_replication_experiment_imaging-modalityYYYY-MM-dd: 2024-12-20, 2024-12-21, 2024-12-22,2024-12-23,2024-12-24,2024-12-25,2024-12-26,2024-12-27,2024-12-28,2024-12-29,2024-12-30,2024-12-31.plate: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30.strain: FG, LE.nitrogen-level: N-1, N-10, N-100.replication: 1, 2, 3, 4, 5.experiment: MV.003.imaging-modality: overhead, transmission (raw). For example, the image2024-12-20__1_FG_N-10_3_MV.003_overheadwas taken on 2024-12-20. The plate number is 1, the fungal strain is FG, the nitrogen treatment is N-10, and the replication number is 3 for experiment MV.003, acquired using the overhead imaging modality. The “predicted_masks” folder contains masks generated by a trained U-Net model for the transmission imaging modality.The “gt_masks” folder contains 326 human hand-traced masks that serve as ground truth.

09 BIOMASS FUELS↗

Magma generation on Mars: Estimated volumes through time

Images of volcanoes and lava flows, chemical analysis by the Viking landers, and studies of meteorites show that volcanism has played an important role in the evolution of Mars. Photogeologic mapping suggests that half of Mars' surface is covered with volcanic materials. Here, researchers present results from new mappings, including estimates of volcanic deposit thicknesses based on partly buried and buried impact craters using the technique of DeHon. The researchers infer the volumes of possible associated plutonic rocks and derive the volumes of magmas on Mars generated in its post-crustal formation history. Also considered is the amount of juvenile water that might have exsolved from the magma through time.

Greeley, Ronald↗

Application of digital image analysis techniques to antimisting fuel spray characterization

Pulsed ruby laser sheet illumination of the spray is used for the initial recording of data on very-high-resolution photographic film. The digitization of mosaic elements is effected with a vidicon and video digitizer whose output is stored in computer RAM memory for processing. Highly nonspherical elements and a broad range of drop diameters (8-2000 microns) resulting from the unusual rheological properties of the fuel-additive system are accommodated by the device configuration and algorithms. It is found that the generation of two-dimensional images by means of scattered light also eliminates errors resulting from variations in the index of refraction and from the submicron scattering sites that are often present within the modified fuel. No a priori information on the drop size distribution or on the system response to various drop sizes is required.

Fleeter, R.↗

SAR squint analysis of directional extended targets

Results are presented for multisquint processing of L-band like-polarized (HH) SAR data. Images of agricultural fields were generated by Doppler filtering of SAR signal film, with an angular width and step size of 0.8 deg. The results indicate that field reflectivities may vary by more than 10 dB over a range of less than 1 deg. Implications of observing extremely narrow-beamwidth targets are discussed for platform-pointing and antenna-stability requirements. It is suggested that a multiazimuth Venus-orbiting imaging radar could provide a significant amount of information at a relatively low weight penalty.

Daily, M. I.↗

Space-resolved spectra of laser-produced plasmas in the XUV

The design and imaging properties of an XUV (extreme ultraviolet, 200-550 A) normal-incidence slitless spectrograph, the spectrum obtained from laser-generated plasmas, and the monochromatic plasma images are described. The electron temperature of the plasmas, electron density as a function of position in the plasma, and the thickness of material penetrated by the laser pulse are determined. Elements from Z = 6 to Z = 28 were investigated, in addition to Nb. Secondary plasma-emission regions were observed 2-3 mm from the flat (thick or thin) targets. Time-integrated photographs of the expanding plasmas were recorded by the slitless spectrograph. A technique for obtaining time-resolved images of the plasmas in picosecond time intervals is proposed, and problems in the design of a stigmatic XUV spectrograph are discussed.

Feldman, U.↗

Horizon: A Proposal for Large Aperture, Active Optics in Geosynchronous Orbit

In 1999, NASA's New Millennium Program called for proposals to validate new technology in high-earth orbit for the Earth Observing-3 (NMP EO3) mission to fly in 2003. In response, we proposed to test a large aperture, active optics telescope in geosynchronous orbit. This would flight-qualify new technologies for both Earth and Space science: 1) a future instrument with LANDSAT image resolution and radiometric quality watching continuously from geosynchronous station, and 2) the Next Generation Space Telescope (NGST) for deep space imaging. Six enabling technologies were to be flight-qualified: 1) a 3-meter, lightweight segmented primary mirror, 2) mirror actuators and mechanisms, 3) a deformable mirror, 4) coarse phasing techniques, 5) phase retrieval for wavefront control during stellar viewing, and 6) phase diversity for wavefront control during Earth viewing. Three enhancing technologies were to be flight- validated: 1) mirror deployment and latching mechanisms, 2) an advanced microcontroller, and 3) GPS at GEO. In particular, two wavefront sensing algorithms, phase retrieval by JPL and phase diversity by ERIM International, were to sense optical system alignment and focus errors, and to correct them using high-precision mirror mechanisms. Active corrections based on Earth scenes are challenging because phase diversity images must be collected from extended, dynamically changing scenes. In addition, an Earth-facing telescope in GEO orbit is subject to a powerful diurnal thermal and radiometric cycle not experienced by deep-space astronomy. The Horizon proposal was a bare-bones design for a lightweight large-aperture, active optical system that is a practical blend of science requirements, emerging technologies, budget constraints, launch vehicle considerations, orbital mechanics, optical hardware, phase-determination algorithms, communication strategy, computational burdens, and first-rate cooperation among earth and space scientists, engineers and managers. This manuscript presents excerpts from the Horizon proposal's sections that describe the Earth science requirements, the structural -thermal-optical design, the wavefront sensing and control, and the on-orbit validation.

Chesters, Dennis↗

TPS Certification by Analysis: Model-Driven Characterization of Properties and Failure in Woven Thermal Protection Systems

Woven, ablative thermal protection system (TPS) materials provide a robust option for aggressive (re)entries and thus have been baselined for the upcoming Mars Sample Return (MSR) mission's Earth Entry System (EES). The reliability requirements for MSR-EES necessitate understanding of material property variability, which could be significant given the complex structure and anisotropic nature of properties in TPS weaves, as well as the response to potential impact with micrometeoroids or orbital debris during the EES re-entry. The TPS Certification by Analysis effort within the Entry Systems Modeling project seeks to provide computational models and analyses that support the certification against such material-based risks. For the present talk, focus will be given to the characterization of baseline woven TPS material properties and mechanical failure limits, which entails (1) use of computational techniques (e.g., machine learning) to interpret computed tomography images of the weave to generate representative structural models and (2) application of multiscale material modeling approaches to characterize thermomechanical and failure properties.

thermal protection systems↗