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At least 1,171 records · Page 65
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

A novel approach for calculating galaxy rotation curves using spaxel cross-correlation and iterative smoothing

ABSTRACT Precise measurements of the internal dynamics of galaxies have proven of great importance for understanding the internal dark matter distribution of galaxies. We present a novel method for measuring the line-of-sight (LOS) velocities across the face of galaxies by cross-correlation of spectral pixels (spaxels) and an iterative method of smoothing. On simulated data the method can accurately recover the input LOS velocities for different types of spectra (absorption-line dominated, emission-line dominated, and differing shapes of the continuum), and can handle stellar population radial gradients. Most important of all, it continues to provide reliable measurements of LOS velocities with reasonable uncertainties even when the spectra are very low signal-to-noise ratio (approaching ∼1), which is a challenge for traditional template-fitting approaches. We apply our method to data from a real MaNGA galaxy as a demonstration and find promising results with good precision. This novel approach can be complementary to existing methods primarily based on template fitting.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

SDSS-IV MaNGA: Identification and multiwavelength properties of Type-1 AGN in the DR15 sample

ABSTRACT We present a method to identify type-1 active galactic nuclei (AGNs) in the central 3 arcsec integrated spectra of galaxies in the MaNGA DR15 sample. It is based on flux ratios estimates in spectral bands flanking the expected h α broad component h αBC. The high signal-to-noise ratio obtained (mean S/N = 84) permits the identification of h αBC without prior subtraction of the host galaxy (HG) stellar component. A final sample of 47 type-1 AGN is reported out of 4700 galaxies at z < 0.15. The results were compared with those from other methods based on the SDSS DR7 and MaNGA data. Detection of type-1 AGN in those works compared to our method goes from 26 per cent to 81 per cent. Spectral indexes were used to classify the type-1 AGN spectra according to different levels of AGN-HG contribution, finding 9 AGN-dominated, 14 intermediate, and 24 HG-dominated objects. Complementary data in NIR-MIR allowed us to identify type I AGN-dominated objects as blue and HG-dominated as red in the WISE colours. From NVSS and FIRST radio continuum data, we identify 5 HERGs (high-excitation radio galaxies) and 4 LERGs (low-excitation radio galaxies), three showing evidence of radio-jets in the FIRST maps. Additional X-ray data from ROSAT allowed us to build [O iii] and h αBC versus X-ray, NIR-MIR, and radio continuum diagrams, showing that L(h αBC) and L([O iii]) provide good correlations. The range in h αBC luminosity is wide 38 < logL(h αBC) < 44, with log FWHM(h αBC) ∼ 3–4, covering a range of Eddington ratios of −5.15 < log Lbol/LEdd < 0.70. Finally, we also identify and report ten possible changing-look AGN candidates.

Cortes-Suárez, Edgar↗
DOE OSTI2022

Detection of spatial clustering in the 1000 richest SDSS DR8 redMaPPer clusters with nearest neighbor distributions

ABSTRACT Distances to the k-nearest-neighbor (kNN) data points from volume-filling query points are a sensitive probe of spatial clustering. Here, we present the first application of kNN summary statistics to observational clustering measurement, using the 1000 richest redMaPPer clusters (0.1 ≤ z ≤ 0.3) from the SDSS DR8 catalog. A clustering signal is defined as a difference in the cumulative distribution functions (CDFs) of kNN distances from fixed query points to the observed clusters versus a set of unclustered random points. We find that the k = 1, 2-NN CDFs of redMaPPer deviate significantly from the randoms’ across scales of 35 to 155 Mpc, which is a robust signature of clustering. In addition to kNN, we also measure the two-point correlation function for the same set of redMaPPer clusters versus random points, which shows a noisier and less significant clustering signal within the same radial scales. Quantitatively, the χ2 distribution for both the kNN-CDFs and the two-point correlation function measured on the randoms peak at χ2 ∼ 50 (null hypothesis), whereas the kNN-CDFs (χ2 ∼ 300, p = 1.54 × 10−36) pick up a much more significant clustering signal than the two-point function (χ2 ∼ 100, p = 1.16 × 10−6) when measured on redMaPPer. Finally, the measured 3NN and 4NN CDFs deviate from the predicted k = 3, 4-NN CDFs assuming an ideal Gaussian field, indicating a non-Gaussian clustering signal for redMaPPer clusters, although its origin might not be cosmological due to observational systematics. Therefore, kNN serves as a more sensitive probe of clustering complementary to the two point correlation function, providing a novel approach for constraining cosmology and galaxy–halo connection.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Measurements of cosmic expansion and growth rate of structure from voids in the Sloan Digital Sky Survey between redshift 0.07 and 1.0

ABSTRACT We present measurements of the anisotropic cross-correlation of galaxies and cosmic voids in data from the Sloan Digital Sky Survey (SDSS) Main Galaxy Sample, Baryon Oscillation Spectroscopic Survey (BOSS), and extended BOSS luminous red galaxy catalogues from SDSS Data Releases 7, 12, and 16, covering the redshift range 0.07 < z < 1.0. As in our previous work analysing voids in subsets of these data, we use a reconstruction method applied to the galaxy data before void finding in order to remove selection biases when constructing the void samples. We report results of a joint fit to the multipole moments of the measured cross-correlation for the growth rate of structure, fσ8(z), and the ratio DM(z)/DH(z) of the comoving angular diameter distance to the Hubble distance, in six redshift bins. For DM/DH, we are able to achieve a significantly higher precision than that obtained from analyses of the baryon acoustic oscillations and galaxy clustering in the same data sets. Our growth rate measurements are of lower precision but still comparable with galaxy clustering results. For both quantities, the results agree well with the expectations for a Λ cold dark matter model. Assuming a flat Universe, our results correspond to a measurement of the matter density parameter $\Omega _\mathrm{m}=0.337^{+0.026}_{-0.029}$. For more general models, the degeneracy directions obtained are consistent with and complementary to those from other cosmological probes. These results consolidate void–galaxy cross-correlation measurements as a pillar of modern observational cosmology.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Constraining ΛCDM cosmological parameters with Einstein Telescope mock data

ABSTRACT We investigate the capability of Einstein Telescope to constrain the cosmological parameters of the non-flat ΛCDM cosmological model. Two types of mock data sets are considered depending on whether or not a short gamma-ray burst is detected, and associated with the gravitational wave emitted by binary neutron stars merger, using the THESEUS satellite. Depending on the mock data set, two statistical estimators are applied: one assumes that the redshift is known, while the other marginalizes over it assuming a specific redshift prior distribution. We demonstrate that (i) using mock catalogues collecting gravitational wave signals emitted by binary neutron stars systems to which a short gamma-ray burst has been associated, Einstein Telescope may achieve an accuracy on the cosmological parameters of $\sigma _{H_0}\approx 0.40$ km s−1 Mpc−1, $\sigma _{\Omega _{k,0}}\approx 0.09$, and $\sigma _{\Omega _{\Lambda ,0}}\approx 0.07$; while (ii) using mock catalogues collecting all gravitational wave signals emitted by binary neutron stars systems for which an electromagnetic counterpart has not been detected, Einstein Telescope may achieve an accuracy on the cosmological parameters of $\sigma _{H_0}\approx 0.04$ km s−1 Mpc−1, $\sigma _{\Omega _{k,0}}\approx 0.01$, and $\sigma _{\Omega _{\Lambda ,0}}\approx 0.01$, once the redshift probability distribution of GW events is known from from population synthesis simulations and/or the measure of the tidal deformability parameter. These results show an improvement of a factor 2–75 with respect to earlier results using complementary data sets.

Califano, Matteo↗
DOE OSTI2022

Combined $\mathrm{APOGEE}$-$\mathrm{GALAH}$ stellar catalogues using the Cannon

APOGEE and GALAH are two high resolution multi-object spectroscopic surveys that provide fundamental stellar parameters and multiple elemental abundance estimates for about half a million stars in the Milky Way. Both surveys observe in different wavelength regimes and use different data reduction pipelines leading to significant offsets and trends in stellar parameters and abundances for the common stars observed in both surveys. Such systematic differences/offsets in stellar parameters and abundances make it difficult to effectively utilize them to investigate Galactic abundance trends in spite of the unique advantage provided by their complementary sky coverage and different Milky Way components they observe. Hence, we use the Cannon data-driven method selecting a training set of 4418 common stars observed by both surveys. This enables the construction of two catalogues, one with the APOGEE-scaled and the other with the GALAH-scaled stellar parameters. Using repeat observations in APOGEE and GALAH, we find high precision in metallicity (~0.02–0.4 dex) and alpha abundances (~0.02–0.03 dex) for spectra with good signal-to-noise ratio (SNR >; 80 for APOGEE and SNR > 40 for GALAH). We use open and globular clusters to validate our parameter estimates and find small scatter in metallicity (0.06 dex) and alpha abundances (0.03 dex) in APOGEE-scaled case. The final catalogues have been cross-matched with the Gaia EDR3 catalogue to enable their use to carry out detailed chemo-dynamic studies of the Milky Way from perspectives of APOGEE and GALAH.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Chemical cartography with LAMOST and Gaia reveal azimuthal and spiral structure in the Galactic disc

Chemical Cartography, or mapping, of our Galaxy has the potential to fully transform our view of its structure and formation. In this work, we use chemical cartography to explore the metallicity distribution of OBAF-type disc stars from the LAMOST survey and a complementary sample of disc giant stars from Gaia DR3. We use these samples to constrain the radial and vertical metallicity gradients across the Galactic disc. We also explore whether there are detectable azimuthal variations in the metallicity distribution on top of the radial gradient. For the OBAF-type star sample from LAMOST, we find a radial metallicity gradient of Δ[Fe/H]/ΔR ~–0.078 ± 0.001 dex kpc –1 in the plane of the disc and a vertical metallicity gradient of Δ[Fe/H]/ΔZ ~–0.15 ± 0.01 dex kpc –1 in the solar neighbourhood. The radial gradient becomes shallower with increasing vertical height, while the vertical gradient becomes shallower with increasing Galactocentric radius, consistent with other studies. We also find detectable spatially dependent azimuthal variations on top of the radial metallicity gradient at the level of ~0.10 dex. Interestingly, the azimuthal variations appear be close to the Galactic spiral arms in one data set (Gaia DR3) but not the other (LAMOST). Furthermore, these results suggest that there is azimuthal structure in the Galactic metallicity distribution and that in some cases it is co-located with spiral arms.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Three approaches for the classification of protoneutron star oscillation modes

ABSTRACT The future detection of gravitational waves (GWs) from a Galactic core-collapse supernova will provide information on the physics inside protoneutron stars (PNS). In this work, we apply three different classification methods for the PNS non-radial oscillation modes: Cowling classification, Generalized Cowling Nomenclature (GCN), and a classification based on modal properties (CBMP). Using PNS models from 3D simulations of core-collapse supernovae, we find that in the early stages of the PNS evolution, typically 0.4 s after the bounce, the Cowling classification is inconsistent, but the GCN and the CBMP provide complementary information that helps to understand the evolution of the modes. In the GCN, we note several avoided crossings as the mode frequencies evolve at early times, while the CBMP tracks the modes across the avoided crossings. We verify that the strongest emission of GWs by the PNS corresponds to the f mode in the GCN, indicating that the mode trapping region alternates between the core and the envelope at each avoided crossing. At later times, approximately 0.4 s after the bounce, the three classification methods present a similar description of the mode spectrum. We use our results to test universal relations for the PNS modes according to their classification and find that the behaviour of the universal relations for f and p modes is remarkably simple in the CBMP.

Astronomy & Astrophysics↗
DOE OSTI2023

Self-calibrating optical galaxy cluster selection bias using cluster, galaxy, and shear cross-correlations

ABSTRACT The clustering signals of galaxy clusters are powerful tools for self-calibrating the mass–observable relation and are complementary to cluster abundance and lensing. In this work, we explore the possibility of combining three correlation functions – cluster lensing, the cluster–galaxy cross-correlation function, and the galaxy autocorrelation function – to self-calibrate optical cluster selection bias, the boosted clustering and lensing signals in a richness-selected sample mainly caused by projection effects. We develop mock catalogues of redMaGiC-like galaxies and redMaPPer-like clusters by applying halo occupation distribution models to N-body simulations and using counts-in-cylinders around massive haloes as a richness proxy. In addition to the previously known small-scale boost in projected correlation functions, we find that the projection effects also significantly boost three-dimensional correlation functions to scales of 100 $h^{-1} \, \rm Mpc$. We perform a likelihood analysis assuming survey conditions similar to the Dark Energy Survey and show that the selection bias can be self-consistently constrained at the 10 per cent level. We discuss strategies for applying this approach to real data. We expect that expanding the analysis to smaller scales and using deeper lensing data would further improve the constraints on cluster selection bias.

Astronomy & Astrophysics↗
DOE OSTI2023

The star-formation history in the last 10 billion years from CIB cross-correlations

ABSTRACT The cosmic infrared background (CIB) traces the emission of star-forming galaxies throughout all cosmic epochs. Breaking down the contribution from galaxies at different redshifts to the observed CIB maps would allow us to probe the history of star formation. In this paper, we cross-correlate maps of the CIB with galaxy samples covering the range z ≲ 2 to measure the bias-weighted star-formation rate (SFR) density 〈bρSFR〉 as a function of time in a model independent way. This quantity is complementary to direct measurements of the SFR density ρSFR, giving a higher weight to more massive haloes, and thus provides additional information to constrain the physical properties of star formation. Using cross-correlations of the CIB with galaxies from the DESI Legacy Survey and the extended Baryon Oscillation Spectroscopic Survey, we obtain high signal-to-noise ratio measurements of 〈bρSFR〉, which we then use to place constraints on halo-based models of the star-formation history. We fit halo-based SFR models to our data and compare the recovered ρSFR with direct measurements of this quantity. We find a qualitatively good agreement between both independent data sets, although the details depend on the specific halo model assumed. This constitutes a useful robustness test for the physical interpretation of the CIB, and reinforces the role of CIB maps as valuable astrophysical probes of the large-scale structure. We report our measurements of 〈bρSFR〉 as well as a thorough account of their statistical uncertainties, which can be used to constrain star-formation models in combination with other data.

Astronomy & Astrophysics↗
DOE OSTI2023

Galaxy Zoo DESI: Detailed morphology measurements for 8.7M galaxies in the DESI Legacy Imaging Surveys

ABSTRACT We present detailed morphology measurements for 8.67 million galaxies in the DESI Legacy Imaging Surveys (DECaLS, MzLS, and BASS, plus DES). These are automated measurements made by deep learning models trained on Galaxy Zoo volunteer votes. Our models typically predict the fraction of volunteers selecting each answer to within 5–10 per cent for every answer to every GZ question. The models are trained on newly collected votes for DESI-LS DR8 images as well as historical votes from GZ DECaLS. We also release the newly collected votes. Extending our morphology measurements outside of the previously released DECaLS/SDSS intersection increases our sky coverage by a factor of 4 (5000–19 000 deg2) and allows for full overlap with complementary surveys including ALFALFA and MaNGA.

Astronomy & Astrophysics↗
DOE OSTI2024

Cosmology from weak lensing peaks and minima with Subaru Hyper Suprime-Cam Survey first-year data

We present cosmological constraints derived from peak counts, minimum counts, and the angular power spectrum of the Subaru Hyper Suprime-Cam first-year (HSC Y1) weak lensing shear catalogue. Weak lensing peak and minimum counts contain non-Gaussian information and hence are complementary to the conventional two-point statistics in constraining cosmology. In this work, we forward-model the three summary statistics and their dependence on cosmology, using a suite of N-body simulations tailored to the HSC Y1 data. We investigate systematic and astrophysical effects including intrinsic alignments, baryon feedback, multiplicative bias, and photometric redshift uncertainties. We mitigate the impact of these systematics by applying cuts on angular scales, smoothing scales, signal-to-noise ratio bins, and tomographic redshift bins. By combining peaks, minima, and the power spectrum, assuming a flat-ΛCDM model, we obtain S 8 ≡ σ 8 $\sqrt{Ω_m/0.3}$ = 0.810$^{+0.022}_{-0.026}$⁠, a 35 per cent tighter constraint than that obtained from the angular power spectrum alone. Our results are in agreement with other studies using HSC weak lensing shear data, as well as with Planck 2018 cosmology and recent CMB lensing constraints from the Atacama Cosmology Telescope and the South Pole Telescope.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

DESI complete calibration of the colour–redshift relation (DC3R2): results from early DESI data

We present initial results from the Dark Energy Spectroscopic Instrument (DESI) complete calibration of the colour–redshift relation (DC3R2) secondary target survey. Our analysis uses 230 k galaxies that overlap with KiDS-VIKING ugriZYJHK s photometry to calibrate the colour–redshift relation and to inform photometric redshift (photo-z) inference methods of future weak lensing surveys. Together with emission line galaxies (ELGs), luminous red galaxies (LRGs), and the Bright Galaxy Survey (BGS) that provide samples of complementary colour, the DC3R2 targets help DESI to span 56 percent of the colour space visible to Euclid and LSST with high confidence spectroscopic redshifts. The effects of spectroscopic completeness and quality are explored, as well as systematic uncertainties introduced with the use of common Self-Organizing Maps trained on different photometry than the analysis sample. We further examine the dependence of redshift on magnitude at fixed colour, important for the use of bright galaxy spectra to calibrate redshifts in a fainter photometric galaxy sample. We find that noise in the KiDS-VIKING photometry introduces a dominant, apparent magnitude dependence of redshift at fixed colour, which indicates a need for carefully chosen deep drilling fields, and survey simulation to model this effect for future weak lensing surveys.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Weak lensing combined with the kinetic Sunyaev–Zel’dovich effect: a study of baryonic feedback

ABSTRACT Extracting precise cosmology from weak lensing surveys requires modelling the non-linear matter power spectrum, which is suppressed at small scales due to baryonic feedback processes. However, hydrodynamical galaxy formation simulations make widely varying predictions for the amplitude and extent of this effect. We use measurements of Dark Energy Survey Year 3 weak lensing (WL) and Atacama Cosmology Telescope DR5 kinematic Sunyaev–Zel’dovich (kSZ) to jointly constrain cosmological and astrophysical baryonic feedback parameters using a flexible analytical model, ‘baryonification’. First, using WL only, we compare the $S_8$ constraints using baryonification to a simulation-calibrated halo model, a simulation-based emulator model, and the approach of discarding WL measurements on small angular scales. We find that model flexibility can shift the value of $S_8$ and degrade the uncertainty. The kSZ provides additional constraints on the astrophysical parameters, with the joint WL + kSZ analysis constraining $S_8=0.823^{+0.019}_{-0.020}$. We measure the suppression of the non-linear matter power spectrum using WL + kSZ and constrain a mean feedback scenario that is more extreme than the predictions from most hydrodynamical simulations. We constrain the baryon fractions and the gas mass fractions and find them to be generally lower than inferred from X-ray observations and simulation predictions. We conclude that the WL + kSZ measurements provide a new and complementary benchmark for building a coherent picture of the impact of gas around galaxies across observations.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Density weighted angular redshift fluctuations: a new cosmological observable

We propose the use of angular fluctuations in the galaxy redshift field as a new way to extract cosmological information in the Universe. This new probe $\delta z (\hat{\mathbf {n}})$ consists of the statistics of sky maps built by projecting redshifts under a Gaussian window of width σz centred upon a redshift zobs, and weighted by the galaxy density field. We compute the angular power spectrum of the $\delta z (\hat{\mathbf {n}})$ field in both numerical simulations and in linear perturbation theory. From these, we find that the $\delta z (\hat{\mathbf {n}})$ field (i) is sensitive to the underlying density and peculiar velocity fields; (ii) is highly correlated, at the $\gtrsim 60\, {{\ \rm per\ cent}}$ level, to the line-of-sight projected peculiar velocity field; (iii) for narrow windows (σz < 0.03), it is almost completely uncorrelated to the projected galaxy angular density field under the same redshift window; and (iv) it is largely unaffected by multiplicative and additive systematic errors on the observed number of galaxies that are redshift-independent over ~σz. We conclude that $\delta z (\hat{\mathbf {n}})$ is a simple and robust tomographic measure of the cosmic density and velocity fields, complementary to angular clustering, that will contribute to more complete exploitations of current and upcoming galaxy redshift surveys.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

The Architecture of Metabolism Maximizes Biosynthetic Diversity in the Largest Class of Fungi

Abstract Ecological diversity in fungi is largely defined by metabolic traits, including the ability to produce secondary or “specialized” metabolites (SMs) that mediate interactions with other organisms. Fungal SM pathways are frequently encoded in biosynthetic gene clusters (BGCs), which facilitate the identification and characterization of metabolic pathways. Variation in BGC composition reflects the diversity of their SM products. Recent studies have documented surprising diversity of BGC repertoires among isolates of the same fungal species, yet little is known about how this population-level variation is inherited across macroevolutionary timescales. Here, we applied a novel linkage-based algorithm to reveal previously unexplored dimensions of diversity in BGC composition, distribution, and repertoire across 101 species of Dothideomycetes, which are considered the most phylogenetically diverse class of fungi and known to produce many SMs. We predicted both complementary and overlapping sets of clustered genes compared with existing methods and identified novel gene pairs that associate with known secondary metabolite genes. We found that variation among sets of BGCs in individual genomes is due to nonoverlapping BGC combinations and that several BGCs have biased ecological distributions, consistent with niche-specific selection. We observed that total BGC diversity scales linearly with increasing repertoire size, suggesting that secondary metabolites have little structural redundancy in individual fungi. We project that there is substantial unsampled BGC diversity across specific families of Dothideomycetes, which will provide a roadmap for future sampling efforts. Our approach and findings lend new insight into how BGC diversity is generated and maintained across an entire fungal taxonomic class.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

A dendritic strontium river isoscape for fisheries applications in the Sacramento River basin, California, USA

Objective Understanding the origins and movements of fish is fundamental to effective conservation and fisheries management. Strontium isotope ratios ( 87 Sr/ 86 Sr) in otoliths provide a powerful tracer of natal origin and migratory pathways. However, existing 87 Sr/ 86 Sr isoscapes for the Sacramento River basin, an ecosystem that supports ecologically and economically important salmon populations, rely on discrete classification approaches that overlook unsampled habitats and do not incorporate spatial uncertainty. Our objective was to develop a continuous, network-explicit 87 Sr/ 86 Sr isoscape with quantified uncertainty to fill in data gaps and enable probabilistic assignments of fish origin and movement. Methods We used river water 87 Sr/ 86 Sr data from 106 sites (1997–2021) to develop spatial stream network models that use dendritic connectivity and watershed characteristics (lithology, bedrock age, and land cover) to predict river water 87 Sr/ 86 Sr throughout the basin. Models were fitted using maximum and restricted likelihood and were evaluated via Akaike’s information criterion and leave-one-out cross validation. We produced both historical (pre-dam) and present-day (below-dam) isoscapes, delineated uncertainty-informed isotopic ranges using k -means clustering, and applied a proof-of-concept Bayesian assignment to estimate natal origins and early rearing habitats for two endangered winter-run Chinook Salmon Oncorhynchus tshawytscha. Results Cross validation indicated strong performance of the 87 Sr/ 86 Sr model (leave-one-out cross validation: R 2 = 0.91; root mean square error = 0.0005). Uncertainty-informed clustering identified 19 isotopic “suites” (reaches with indistinguishable 87 Sr/ 86 Sr values) in present-day anadromous habitats and 25 suites in the historical network. Example natal and early rearing assignments included predictions that challenged expectations for juvenile salmon migration based on predicted river 87 Sr/ 86 Sr compositions. Conclusions This study developed a continuous, network-explicit 87 Sr/ 86 Sr isoscape that integrates existing river data to predict 87 Sr/ 86 Sr in unsampled reaches and the likely achievable range and resolution of otolith-based origin and life history inference. The resulting river isoscape provides a valuable tool to predict salmon movements and identify habitats supporting their survival and growth that otherwise might remain undetected. Coupling these predictions with complementary approaches that ground-truth juvenile presence (e.g., targeted fish surveys) represents an important step toward science-informed restoration and management of critical habitats throughout the Sacramento River basin.

Environmental sciences↗
DOE OSTI2020

Modular protein-oligonucleotide signal exchange

Abstract While many methods are available to measure the concentrations of proteins in solution, the development of a method to quantitatively report both increases and decreases in different protein concentrations in real-time using changes in the concentrations of other molecules, such as DNA outputs, has remained a challenge. Here, we present a biomolecular reaction process that reports the concentration of an input protein in situ as the concentration of an output DNA oligonucleotide strand. This method uses DNA oligonucleotide aptamers that bind either to a specific protein selectively or to a complementary DNA oligonucleotide reversibly using toehold-mediated DNA strand-displacement. It is possible to choose the sequence of output strand almost independent of the sensing protein. Using this strategy, we implemented four different exchange processes to report the concentrations of clinically relevant human α-thrombin and vascular endothelial growth factor using changes in concentrations of DNA oligonucleotide outputs. These exchange processes can operate in tandem such that the same or different output signals can indicate changes in concentration of distinct or identical input proteins. The simplicity of our approach suggests a pathway to build devices that can direct diverse output responses in response to changes in concentrations of specific proteins.

59 BASIC BIOLOGICAL SCIENCES↗