MACAW: An Accessible Tool for Molecular Embedding and Inverse Molecular Design
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37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
SEARCH · Engineering Papers
Results for “Tooling”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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MPpredictor: An Artificial Intelligence-Driven Web Tool for Composition-Based Material Property Prediction
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37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Development of First-in-Class Dual Sirt2/HDAC6 Inhibitors as Molecular Tools for Dual Inhibition of Tubulin Deacetylation
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60 APPLIED LIFE SCIENCES↗
OpenMSCG: A Software Tool for Bottom-Up Coarse-Graining
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37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Probing Complex Chemical Processes at the Molecular Level with Vibrational Spectroscopy and X-ray Tools
Understanding the origins of structure and bonding at the molecular level in complex chemical systems spanning magnitudes in length and time is of paramount interest in physical chemistry. Here, we have coupled vibrational spectroscopy and X-ray based techniques with a series of microreactors and aerosol beams to tease out intricate and sometimes subtle interactions, such as hydrogen bonding, proton transfer, and noncovalent interactions. This allows for unraveling the self-assembly of arginine-oleic acid complexes in an aqueous solution and growth processes in a metal–organic framework. Terahertz and infrared spectroscopy provide an intimate view of the hydrogen-bond network and associated phase changes with temperature in neopentyl glycol. The hydrogen-bond network in aqueous glycerol aerosols and levels of protonation of nicotine in aqueous aerosols are visualized. Future directions in probing the hydrogen-bond networks in deep eutectic solvents and organic frameworks are described, and we suggest how X-ray scattering coupled to X-ray spectroscopy can offer insight into the reactivity of organic aerosols.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Beyond Epitaxy: Ion Implantation as a Tool for Orbital Engineering
Manipulating electronic orbital states in quantum materials provides a powerful means of controlling their physical properties and technological functionality. Here, we demonstrate that orbital populations in strongly correlated oxide thin films can be continuously and reversibly tuned through postsynthesis He ion implantation. Using LaNiO 3 as a model system, we show that the orbital preference can be systematically adjusted from favoring in-plane d x 2 –y 2 occupation toward out-of-plane d z 2 states through precise control of ion fluence. Unlike conventional heteroepitaxial approaches that lock in orbital configurations during growth, this strain-doping technique enables continuous orbital tuning and the selective modification of specific film regions after device fabrication. We demonstrate the practical impact of this control by achieving a 7-fold enhancement in oxygen reduction reaction catalysis. This work establishes ion implantation as a powerful approach for orbital engineering that complements existing synthesis-based strategies while offering unique advantages for both basic research and device development.
Doping↗
A Simplified Predictive Tool for Design and Analysis of SET-LRP Reactions with Mechanistic Insight
Not provided.
Materials Science↗
Mediated Electrochemical Probing: A Systems-Level Tool for Redox Biology
Biology uses well-known redox mechanisms for energy harvesting (e.g., respiration), biosynthesis, and immune defense (e.g., oxidative burst), and now we know biology uses redox for systems-level communication. Currently, we have limited abilities to “eavesdrop” on this redox modality, which can be contrasted with our abilities to observe and actuate biology through its more familiar ionic electrical modality. In this Perspective, we argue that the coupling of electrochemistry with diffusible mediators (electron shuttles) provides a unique opportunity to access the redox communication modality through its electrical features. Here, we highlight previous studies showing that mediated electrochemical probing (MEP) can “communicate” with biology to acquire information and even to actuate specific biological responses (i.e., targeted gene expression). We suggest that MEP may reveal an extent of redox-based communication that has remained underappreciated in nature and that MEP could provide new technological approaches for redox biology, bioelectronics, clinical care, and environmental sciences.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Carbamoylation as an Effective Tool in the Analysis of the Soman Nerve Agent Marker Pinacolyl Alcohol in Soil Matrices by EI-GC-MS and LC-HRMS
Pinacolyl alcohol (PA) is a Schedule 2 chemical commonly featured in most proficiency tests (PTs) administered by the Organisation for the Prohibition of Chemical Weapons (OPCW) due to its direct as well as forensic link to the nerve agent Soman. Therefore, its detection by Chemical Weapons Convention (CWC) inspection teams during on-site investigations is a strong indicator of the past or latent presence of Soman in the environment. Its small molecular weight (102), early elution time, and poor ionization profile make PA a challenging analyte to detect particularly at low concentrations (∼1–10 μg/g). In this work, 1,1′-carbonyldimidazole (CDI) has been used to effectively modify PA for the first time in two different soil matrices (Virginia type A soil and silt sediment) at two separate concentrations (1 and 10 μg/g) for its subsequent detection by EI-GC-MS and LC-HRMS methods. For the EI-GC-MS analysis, the PA carbamate derivative (PIC) exhibits improved chromatography relative to PA such as improved peak shape, increased molecular weight (196 for PIC and 102 for PA) and increased retention time (16.9 min for PIC and ∼4.1 min for PA). In addition, the derivatization also improves the detection of PA by LC-HRMS as the PIC product possesses protonation sites (i.e., imidazole ring) relative to none exhibited by PA. More importantly, the carbamoylation proceeds under mild conditions (55 °C, no base) and rapidly (3 h), characteristics that make it an appealing protocol for the analysis of PA during OPCW PTs or real case scenarios particularly in instances where it is present at low concentrations. It is anticipated that the protocol can be applied to the forensic analysis of this important Soman marker in various environmental matrices.
Chemistry↗
Using Data Science Tools to Reveal and Understand Subtle Relationships of Inhibitor Structure in Frontal Ring-Opening Metathesis Polymerization
The rate of frontal ring-opening metathesis polymerization (FROMP) using the Grubbs generation II catalyst is impacted by both the concentration and choice of monomers and inhibitors, usually organophosphorus derivatives. Herein we report a data-science-driven workflow to evaluate how these factors impact both the rate of FROMP and how long the formulation of the mixture is stable (pot life). Using this workflow, we built a classification model using a single-node decision tree to determine how a simple phosphine structural descriptor (V bur-near ) can bin long versus short pot life. Additionally, we applied a nonlinear kernel ridge regression model to predict how the inhibitor and selection/concentration of comonomers impact the FROMP rate. Furthermore, the analysis provides selection criteria for material network structures that span from highly cross-linked thermosets to non-cross-linked thermoplastics as well as degradable and nondegradable materials.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Helium in Stream Water as a Volcanic Monitoring Tool
Abstract We show that synoptic sampling of streams can be used to characterize volcanic volatiles in groundwater over large spatial scales. Synoptic sampling of dissolved noble gases, 222 Rn, major ions, and stream discharge was carried out along a 30 km reach of the Gibbon River, near Norris Geyser Basin in Yellowstone National Park, USA. Groundwater discharge location, volume, and composition were estimated by constrained calibration of a stream flow and solute transport model. Estimated groundwater composition from stream modeling was compared to shallow groundwater concentrations measured in nearby springs. 3 He, 222 Rn, and Cl signatures in the Gibbon River are indicative of groundwater discharge with a volcanic signature along the study reach. Stream water noble gas isotopic composition has similar isotopic mixing patterns to springs. The model‐estimated composition of groundwater discharging to the Gibbon agrees well with observed groundwater composition from nearby springs for all modeled analytes. We present the first observations of elevated mantle helium in stream water and show that stream water can be used as a convenient collection point to estimate spatially distributed groundwater composition and to monitor changes in volatile flux over large spatial areas. These results offer the possibility that stream surveys in volcanic terrain could be a new method for distributed volcanic monitoring at the catchment scale and beyond.
Gardner, W. Payton↗
Reservoir Computing as a Tool for Climate Predictability Studies
Reduced-order dynamical models play a central role in developing our understanding of predictability of climate irrespective of whether we are dealing with the actual climate system or surrogate climate models. In this context, the linear inverse modeling (LIM) approach, by capturing a few essential interactions between dynamical components of the full system, has proven valuable in providing insights into predictability of the full system. We demonstrate that reservoir computing (RC), a form of learning suitable for systems with chaotic dynamics, provides an alternative nonlinear approach that improves on the predictive skill of the LIM approach. We do this in the example setting of predicting sea surface temperature in the North Atlantic in the preindustrial control simulation of a popular earth system model, the Community Earth System Model so that we can compare the performance of the new RC-based approach with the traditional LIM approach both when learning data are plentiful and when such data are more limited. The improved predictive skill of the RC approach over a wide range of conditions—larger number of retained EOF coefficients, extending well into the limited data regime, etc.—suggests that this machine-learning technique may have a use in climate predictability studies. While the possibility of developing a climate emulator—the ability to continue the evolution of the system on the attractor long after failing to be able to track the reference trajectory—is demonstrated in the Lorenz-63 system, it is suggested that further development of the RC approach may permit such uses of the new approach in more realistic predictability studies.
54 ENVIRONMENTAL SCIENCES↗
Passive Microwave Radiometry and Active Radar Sounding as Complementary Tools for Geophysical Investigations of Icy Ocean Worlds
Juno Microwave Radiometer (MWR) observations of Europa and Ganymede offer critical insights into the icy shells of these moons ahead of NASA's Europa Clipper and ESA's JUpiter ICy moons Explorer (JUICE) missions. Both missions are equipped with active radar sounders designed to address key unknowns such as ice shell thickness, thermal state, and composition. In this study, we explore how passive microwave radiometry and active radar sounding can constrain ice shell properties, focusing on Europa. Using modeled microwave brightness temperature observations at 0.6 and 1.2 GHz alongside simulated radar attenuation rate observations, we show that each instrument can independently produce robust ice shell thickness constraints under idealized conditions. We then relax these assumptions, quantifying how uncertainties from non-ideal properties—including convective layers, freezing-point depression, and chloride-doped ice—affect thickness estimates. Finally, we demonstrate how combining observations from these complementary techniques breaks degeneracies between ice shell properties, enabling more robust constraints than either method alone. This approach will maximize the science return of Europa Clipper and JUICE, advancing our understanding of the thermophysical structure and habitability of icy ocean worlds.
58 GEOSCIENCES↗
RCSB Protein Data Bank tools for 3D structure-guided cancer research: human papillomavirus (HPV) case study
Abstract Atomic-level three-dimensional (3D) structure data for biological macromolecules often prove critical to dissecting and understanding the precise mechanisms of action of cancer-related proteins and their diverse roles in oncogenic transformation, proliferation, and metastasis. They are also used extensively to identify potentially druggable targets and facilitate discovery and development of both small-molecule and biologic drugs that are today benefiting individuals diagnosed with cancer around the world. 3D structures of biomolecules (including proteins, DNA, RNA, and their complexes with one another, drugs, and other small molecules) are freely distributed by the open-access Protein Data Bank (PDB). This global data repository is used by millions of scientists and educators working in the areas of drug discovery, vaccine design, and biomedical and biotechnology research. The US Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) provides an integrated portal to the PDB archive that streamlines access for millions of worldwide PDB data consumers worldwide. Herein, we review online resources made available free of charge by the RCSB PDB to basic and applied researchers, healthcare providers, educators and their students, patients and their families, and the curious public. We exemplify the value of understanding cancer-related proteins in 3D with a case study focused on human papillomavirus.
60 APPLIED LIFE SCIENCES↗