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At least 1,153 records · Page 64

Galen View

This is software lets one explore the data released as part of the COVID-19 Open Research Dataset Challenge. It downloads and analyzes the natural language text of the data set and then creates a 2D visualization that can be used to explore it. SAND2020-12185 M Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-NA0003525.

Bauer, Travis↗

Holistic Fuel Cell Electric Vehicle/Hydrogen Station Optimization Model (CRADA CRD-18-00745 Final Report)

The National Renewable Energy Lab (NREL), Argonne National Lab (ANL), Sandia National Lab (SNL), and Frontier Energy, Inc comprise a team that will perform a review of currently available models that can simulate both a hydrogen station and a fuel cell electric vehicle (FCEV), and whose owners are willing to make them available freely. We will then down select to a single model or model pair, secure agreements for their free use, and validate the resulting model or coupled models. For example, we may evaluate an existing 1-D hydrogen fueling model developed by Kyushu University for the Japanese New Energy and Industrial Technology Development Organization (NEDO). The validation will take place using data from various sources, potentially including the European Joint Research Center (JRC) HyTransfer project, SAE testing performed by Powertech to validate SAE J2601, and whole-station validation using the NREL’s Hydrogen Infrastructure Testing and Research Facility (HITRF). The team will make the model and all the validation data open to the public at the end of the project.

1-D hydrogen fueling model↗

Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project

An important need exists to better understand and stratify kidney disease according to its underlying pathophysiology in order to develop more precise and effective therapeutic agents. National collaborative efforts such as the Kidney Precision Medicine Project are working towards this goal through the collection and integration of large, disparate clinical, biological and imaging data from patients with kidney disease. Ontologies are powerful tools that facilitate these efforts by enabling researchers to organize and make sense of different data elements and the relationships between them. Ontologies are critical to support the types of big data analysis necessary for kidney precision medicine, where heterogeneous clinical, imaging and biopsy data from diverse sources must be combined to define a patient’s phenotype. Here, the development of two new ontologies — the Kidney Tissue Atlas Ontology and the Ontology of Precision Medicine and Investigation — will support the creation of the Kidney Tissue Atlas, which aims to provide a comprehensive molecular, cellular and anatomical map of the kidney. These ontologies will improve the annotation of kidney-relevant data, and eventually lead to new definitions of kidney disease in support of precision medicine.

60 APPLIED LIFE SCIENCES↗

Navigating Exascale Operational Data Analytics: From Inundation to Insight

In this paper, we address the challenges in achieving sustainable data-driven efficiency by providing a detailed exploration of the end-to-end operational data analytics (ODA) framework that evolved through two generations of supercomputer systems at the Oak Ridge Leadership Computing Facility (OLCF). This framework addresses large data streams ingested from heavily instrumented HPC environment that accumulates multi-terabytes per day. We outline the multifaceted data life cycle across HPC procurement, operations, and research & development, identifying key obstacles and design decisions that shape effective strategies in building and supporting data pipelines end-to-end. By sharing key insights and lessons learned from our experience, we offer recommendations for the HPC community on enabling sustainable operational data analytics and beyond. Our contributions aim to bridge the gap between potential and real benefits of operational data, guiding future efforts towards integrated and sustainable operational intelligence in high-performance computing environments.

Shin, Woong↗

Alabama Carbon Storage: Bringing Data to the People

The Gulf Coastal Plain of Alabama has proven potential for geologic carbon storage and current interest in the area for large carbon capture and storage (CCS) projects is high. Extensive CCS relevant data exist in the records of the Geological Survey of Alabama and State Oil and Gas Board of Alabama, however, most of this data is not publicly available or is scattered in separate databases, file cabinets, and tables in publications. The “Alabama Carbon Storage: Data Sharing and Engagement” (ACS-DSE) project seeks to accelerate the responsible development of large CCS projects in the Gulf Coastal Plain of Alabama and offshore in state waters through a publicly accessible database of geologic carbon storage models and data across the region. The ACS-DSE draws on the over 150 years of geologic research and over 20 years of experience in CCS research to place relevant geologic, geophysical, and infrastructure data on a single web platform. Datasets available will include formation depths and elevations, geologic structures, reservoir properties, digital well logs (LAS files), existing penetrations, and geologic models. In addition to downloadable datasets, links to CCS related regulatory agencies and other sources of information will be included (for example, Class VI UIC permitting regulations and pipeline regulations). By making these datasets and models available in commonly used formats on a public website, the project will increase transparency in decision making and decrease the data acquisition time for industry.

01 COAL, LIGNITE, AND PEAT↗

An Experimental Investigation of Students? Learning Effects When Using a Simplified Nuclear Simulator

This study focuses on investigating students' learning effects and performance trends over a certain period using the Rancor Microworld Simulator. Specifically, it aims to determine the training required to collect HRA data from non-experts (i.e., students) using Rancor Microworld and the differences in human performance measures between students and professional operators. A longitudinal experiment is conducted with sixteen undergraduate students, using four Rancor Microworld scenarios in each of the four experiment trials. The study considers four human performance measurements workload, situation awareness, time, and error. Finally, the trend of students' performance is compared with operator data collected from the previous experiment. Overall, this research complements previous studies by providing insights into how much training is required to collect HRA data from non-experts and the differences in human performance measures between students and professional operators.

99 GENERAL AND MISCELLANEOUS↗

Editorial: Hydrology, ecology, and nutrient biogeochemistry at the terrestrial-aquatic interface

Terrestrial-aquatic interfaces (TAI) play important roles in mediating the exchange of water and chemicals between land, surface and subsurface water systems, which is tightly coupled with biogeochemical transformations that influence water quality and ecosystem health (Harvey and Gooseff, 2015; Harvey et al., 2019). Understanding and predicting the interactions between the hydrologic, ecologic, and biogeochemical processes at those interfaces is crucial for the sustainable management of water resources and promotion of healthy ecosystems under different environmental stresses and disturbances, including climate change, human activities, and more frequent occurrence of extreme events. Both process-based and data-driven approaches have emerged to address critical challenges at TAIs as integral parts of the Earth system (e.g., Ward and Packman, 2019; Chen et al., 2021; Dwivedi et al., 2022). In this Research Topic, we sought research that advances the understanding of coupled hydrologic, ecologic, and biogeochemical processes along various TAIs from the summit to sea, e.g., river corridors and coastal TAI systems. We invited observational, experimental, theoretical, analytical, numerical, and data-driven research that aims to understand hydro-biogeochemical processes such as the redox dynamics and biogeochemical transformations of carbon, nutrients, and metals occurring at the TAIs and address their heterogeneity and scaling challenges.

54 ENVIRONMENTAL SCIENCES↗

Simple Scattering: Lipid nanoparticle structural data repository

Lipid nanoparticles (LNPs) are being intensively researched and developed to leverage their ability to safely and effectively deliver therapeutics. To achieve optimal therapeutic delivery, a comprehensive understanding of the relationship between formulation, structure, and efficacy is critical. However, the vast chemical space involved in the production of LNPs and the resulting structural complexity make the structure to function relationship challenging to assess and predict. New components and formulation procedures, which provide new opportunities for the use of LNPs, would be best identified and optimized using high-throughput characterization methods. Recently, a high-throughput workflow, consisting of automated mixing, small-angle X-ray scattering (SAXS), and cellular assays, demonstrated a link between formulation, internal structure, and efficacy for a library of LNPs. As SAXS data can be rapidly collected, the stage is set for the collection of thousands of SAXS profiles from a myriad of LNP formulations. In addition, correlated LNP small-angle neutron scattering (SANS) datasets, where components are systematically deuterated for additional contrast inside, provide complementary structural information. The centralization of SAXS and SANS datasets from LNPs, with appropriate, standardized metadata describing formulation parameters, into a data repository will provide valuable guidance for the formulation of LNPs with desired properties. To this end, we introduce Simple Scattering, an easy-to-use, open data repository for storing and sharing groups of correlated scattering profiles obtained from LNP screening experiments. Here, we discuss the current state of the repository, including limitations and upcoming changes, and our vision towards future usage in developing our collective knowledge base of LNPs.

59 BASIC BIOLOGICAL SCIENCES↗

PCAfold 2.0—Novel tools and algorithms for low-dimensional manifold assessment and optimization

We describe an update to our open-source Python package, PCAfold, designed to help researchers generate, analyze and improve low-dimensional data manifolds. In the current version, PCAfold 2.0, we introduce novel tools and algorithms for assessing and optimizing low-dimensional manifolds. This includes a method that generates a “map” of local feature sizes that can help pinpoint researchers to problematic regions on a manifold. We introduce a novel cost function that characterizes the quality of a manifold topology with a single number. We develop two algorithms for feature selection based on principal component analysis (PCA) that use the cost function as an objective function to minimize. We introduce a quantity of interest (QoI)-aware dimensionality reduction strategy where data projections are computed using an artificial neural network and are directly optimized towards representing various projection-independent and projection-dependent QoIs. We also introduce an implementation of partition of unity networks (POUnets) for efficient reconstruction of QoIs from low-dimensional manifolds based on combining neural network classification with localized polynomial regression. Our software can be broadly applicable in all domains of science and engineering that aim to reduce data dimensionality, as well as in the fundamental research on representation learning.

97 MATHEMATICS AND COMPUTING↗

Enhancing risk and crisis communication with computational methods: A systematic literature review

Abstract Recent developments in risk and crisis communication (RCC) research combine social science theory and data science tools to construct effective risk messages efficiently. However, current systematic literature reviews (SLRs) on RCC primarily focus on computationally assessing message efficacy as opposed to message efficiency. We conduct an SLR to highlight any current computational methods that improve message construction efficacy and efficiency. We found that most RCC research focuses on using theoretical frameworks and computational methods to analyze or classify message elements that improve efficacy. For improving message efficiency, computational and manual methods are only used in message classification. Specifying the computational methods used in message construction is sparse. We recommend that future RCC research apply computational methods toward improving efficacy and efficiency in message construction. By improving message construction efficacy and efficiency, RCC messaging would quickly warn and better inform affected communities impacted by current hazards. Such messaging has the potential to save as many lives as possible.

Mathematical Methods In Social Sciences↗

WELLS Database

The Wellbore Exploration and Location Logistic System (WELLS) is a living national wellbore database - created and maintained by the National Energy Technology Laboratory (NETL). This resource contains more than seven million public wellbore records from state, federal, and tribal resources. Sourced from over 65 authoritative, yet disparate resources, the WELLS Database combines and synthesizes well data from oil, gas, underground injection, research, geothermal, geotechnical, groundwater and other types of wells in a single, unified system. This resource can be explored and visualized through the WELLS Interactive Application, also on EDX: https://edx.netl.doe.gov/dataset/wells-interactive-application The WELLS Database (formerly titled CO2-Locate) is an integrated national well dataset, representing open-source wellbore data from disparate state, tribal, and federal entities. The database provides publicly available well header data with key attributes such as well age, depth, and status. The database contains a fully integrated CSV file with all values in numerical columns, such as depth, converted into numbers. This version has a NETL derived API (American Petroleum Institute) number column and has been handled for redundancies, resulting in one record for every unique API number. The database also contains a fully integrated CSV file, where all original data are kept as text values. Additionally, the database includes a shapefile containing key attributes and coordinates from the integrated dataset, reformatted public wells CSV files, and a proprietary well density grid shapefile. Notes for consideration: The WELLS Database will be updated periodically with new datasets and information. A field dictionary with field (i.e., attribute) coverage across acquired public well resources, and the resulting integrated public well datasets are available in the spreadsheet, WELLS_Field_Dictionary.xlsx. Summary layers provided in this database are derived from proprietary layers and do not always contain key features (status, type, true vertical depth, or spud year) and therefore might not be shown when data are queried for those features.

AS↗

Search for a Cloud Phase Feedback in the Arctic Climate System

This project was motivated by a hypothesis involving the transition in lower troposphere temperatures across the freezing point of water. Specifically, at temperatures just below to about ten degrees below freezing, Arctic clouds should be in a mixed-phase, with strong influences from secondary ice production (e.g., the Hallett-Mossop process). At temperatures just above freezing, clouds should become entirely deglaciated. We hypothesized that, with multiple years of ARM data, a statistically significant change could be detected in cloud radiative properties and surface radiative fluxes that could be directly attributed to this phase change. Furthermore, in a gradually warming climate, these phase change-related responses in surface radiation would represent a cloud phase feedback as part of Arctic amplification. We designed this research project to coincide with a new ARM Arctic cloud radar product developed by Ed Luke and collaborators at BNL (Luke et al., 2021: PNAS, doi:10.1073/pnas.2021387118) that explicitly contains SIP cloud properties retrieved from radar data. This research project has successfully concluded after analysis of a much larger North Slope of Alaska (NSA) data sample than originally anticipated, and the results are quite different than originally hypothesized.

58 GEOSCIENCES↗

WIND Toolkit Long-Term Ensemble Dataset

WIND Toolkit Long-term Ensemble Dataset (WTK-LED), an updated version of the meteorological WIND Toolkit, is a meteorological dataset providing high-resolution time series, including interannual variability and model uncertainty of wind speed at every modeling grid point to indicate ranges of possible wind speeds. The data were produced using the Weather Research and Forecasting Model (WRF). The vertical grid used in WTK-LED includes many vertical layers in the atmospheric boundary layer to provide information of atmospheric quantities across the rotor layer of utility scale and distributed wind turbines. The WTK-LED includes: (1) Numerical simulations of wind speed and other meteorological variables covering the contiguous United States (CONUS) and Alaska, with high-resolution (5-minute [min], 2-kilometer [km]) data for 3 years (2018-2020): WTK-LED CONUS, WTK-LED Alaska. (2) Climate simulations from Argonne National Laboratory covering North America, including Alaska, Canada, and most of Mexico and the Caribbean islands. These simulations complement the new WTK-LED to offer a 4-km, hourly dataset covering 20 years (2001-2020): WTK-LED Climate. (3) Specific long-term, high-resolution offshore simulations have been conducted separately for the U.S. coasts, Hawaii, and the Great Lakes, leading to the 2023 National Offshore Wind dataset: NOW-23. The data for Hawaii include land-based data and are part of WTK-LED Hawaii. Because the accuracy of simulations from a mesoscale model, such as WRF, varies depending on the location and weather situation, and can reach up to several m/s for wind speed, we provide simulated wind speed uncertainty estimates to the community to be used in conjunction with the deterministic model simulations. This dataset was developed to satisfy a wide group of stakeholders across various wind energy disciplines, including but not limited to stakeholders in the distributed and utility scale wind industry, the new emerging airborne wind energy field, grid integration, power systems modeling, environmental modeling, and researchers in academia, and to close some of the gaps that current public datasets have. Based on our validation results to date, we suggest use cases and applications for each dataset of the WTK-LED as shown in "WTK-LED Use Cases" resource below.

Array↗

Development and Validation of Predictive Models for In-Cylinder Radiation and Wall Heat Transfer

The lack of accurate submodels for in-cylinder radiation and heat transfer has been identified as a key shortcoming in developing truly predictive, physics-based computational fluid dynamics (CFD) models that can be used to develop and design combustion systems for advanced high-efficiency, low-emissions engines. Measurements of wall boundary layers in engines show discrepancies of up to 100% with respect to standard CFD boundary layer models. And analysis of in-cylinder radiation based on the most recent spectral property databases and high-fidelity radiative transfer equation solvers has shown that at operating pressures and exhaust-gas recirculation levels typical of modern compression-ignition truck engines, molecular gas radiation (mainly carbon dioxide and water vapor) can be more important than soot particle radiation, and that a significant fraction of the emitted radiation (50% or more) can be reabsorbed before reaching the walls, thereby acting to redistribute energy in the combustion chamber. In this project, an integrated experimental and simulation approach has been used to generate new physical insight into in-cylinder heat-transfer processes in engines, and to develop computationally practicable CFD-based models that accurately represent the physics. New experimental data have been taken in an optically accessible single-cylinder research engine, and in a multi-cylinder production engine. Those data have provided new insight into the radiative environment in engines. New CFD models have been developed and validated for in-cylinder heat transfer, focusing mainly on radiative heat transfer and coupling between turbulent boundary layer wall heat transfer and radiative heat transfer. The CFD models have been developed and implemented in an open-source software framework that can be shared with other researchers. The models are compatible both with unsteady Reynolds-averaged Navier Stokes (URANS) formulations and with large-eddy simulations (LES) of in-cylinder processes in engines.

02 PETROLEUM↗

Elucidating the Dynamics of Electroweak Symmetry Breaking through Study of High-Multiplicity Boson Final States at the LHC

To understand the full story of the electroweak symmetry breaking (EWSB) and how the universe arrived at today’s universe, the structure of the Higgs potential needs to be probed. We must carefully select and study processes at the LHC that are sensitive to the Higgs potential. In this context, longitudinal vector boson scattering (VBS) processes, V L V L →V L V L , and di-Higgs production, including V L V L →HH at the LHC have been studied for any potential deviation from SM prediction. However, many classes of models beyond the Standard Model (BSM) may result in the 2→2 process being perfectly well-behaved and SM-like but show interesting deviations in 2→3, 2→4, or 2→n(3) processes. If we are to complete the mission objectives the P5 laid out, then a large swath of 2→n(3) must be thoroughly searched and checked. The research supported by this award used data collected at the Compact Muon Solenoid (CMS) detector at the Large Hadron Collider (LHC) to explore VBS produced VVH process in the semi-merged channel. In addition, in the electroweak sector, there are open questions in the multi-gauge boson couplings and the Higgs couplings to the gauge bosons. The research supported by the award also studied the triboson production WWZ process at the LHC, which is a crossed diagram of a VBS process. During the funded period of 9 months, the analysis designs have been finalized.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Unraveling the Threads of Environmental Justice in Critical Mineral Extraction: A Framework for Regionalized Life Cycle Data

As we transition to a more sustainable energy system, the extraction and processing of critical minerals becomes increasingly important. However, these industries often raise concerns about environmental and social impacts, particularly in disadvantaged communities. To address these concerns, our research focuses on regionalizing environmental life cycle data to connect it with communities affected by mineral extraction. A framework was developed for collecting life cycle background data that supports the Justice40 Toolset, a market-based approach to evaluating net benefits and costs of critical mineral material recovery pathways. A goal was to alleviate public skepticism around mineral extraction processes, including secondary and unconventional feedstocks, by highlighting both environmental and social impacts. To achieve this, computational analysis and geospatial data science techniques were employed, such as within-scale and across-scale methods and proxy dataset usage. By doing so, we were able to develop a framework for identifying and disaggregating data down to regions small enough to support Justice40 goals. Our approach not only provides valuable tools fo insight into the environmental implications of mineral extraction but also helps policymakers evaluate the social impacts on local communities. This research contributes to a more just and equitable transition to a sustainable energy system, ensuring that marginalized voices are heard in decision-making process.

Davis, Tyler [NETL Site Support Contractor, Nation↗

MBARI WEC 2021 deployment

This dataset includes data from the Monterey Bay Aquarium Research Institute (MBARI) wave energy converter (WEC) and a nearby located Sofar Spotter buoy. The Monterey Bay Aquarium Research Institute has developed and deployed a small two-body point absorber wave energy device suitable to autonomous underwater vehicle, sensor system, and even aquaculture farm needs. For more information on the MBARI WEC see the research journal attached in the submission.

16 TIDAL AND WAVE POWER↗

Guided construction of single cell reference for human and mouse lung

Accurate cell type identification is a key and rate-limiting step in single-cell data analysis. Single-cell references with comprehensive cell types, reproducible and functionally validated cell identities, and common nomenclatures are much needed by the research community for automated cell type annotation, data integration, and data sharing. Here, we develop a computational pipeline utilizing the LungMAP CellCards as a dictionary to consolidate single-cell transcriptomic datasets of 104 human lungs and 17 mouse lung samples to construct LungMAP single-cell reference (CellRef) for both normal human and mouse lungs. CellRefs define 48 human and 40 mouse lung cell types catalogued from diverse anatomic locations and developmental time points. We demonstrate the accuracy and stability of LungMAP CellRefs and their utility for automated cell type annotation of both normal and diseased lungs using multiple independent methods and testing data. We develop user-friendly web interfaces for easy access and maximal utilization of the LungMAP CellRefs.

59 BASIC BIOLOGICAL SCIENCES↗