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At least 1,153 records · Page 64

On the influence of over-parameterization in manifold based surrogates and deep neural operators

Constructing accurate and generalizable approximators (surrogate models) for complex physico-chemical processes exhibiting highly non-smooth dynamics is challenging. The main question is what type of surrogate models we should construct and should these models be under-parameterized or over-parameterized. In this work, we propose new developments and perform comparisons for two promising approaches: manifold-based polynomial chaos expansion (m-PCE) and the deep neural operator (DeepONet), and we examine the effect of over-parameterization on generalization. While m-PCE enables the construction of a mapping by first identifying low-dimensional embeddings of the input functions, parameters, and quantities of interest (QoIs), a neural operator learns the nonlinear mapping via the use of deep neural networks. Here, we demonstrate the performance of these methods in terms of generalization accuracy by solving the 2D time-dependent Brusselator reaction-diffusion system with uncertainty sources, modeling an autocatalytic chemical reaction between two species. We first propose an extension of the m-PCE by constructing a mapping between latent spaces formed by two separate embeddings of the input functions and the output QoIs. To further enhance the accuracy of the DeepONet, we introduce weight self-adaptivity in the loss function. We demonstrate that the performance of m-PCE and DeepONet is comparable for cases of relatively smooth input-output mappings. However, when highly non-smooth dynamics is considered, DeepONet shows higher approximation accuracy. We also find that for m-PCE, modest over-parameterization leads to better generalization, both within and outside of distribution, whereas aggressive over-parameterization leads to over-fitting. In contrast, an even highly over-parameterized DeepONet leads to better generalization for both smooth and non-smooth dynamics. Furthermore, we compare the performance of the above models with another recently proposed operator learning model, the Fourier Neural Operator, and show that its over-parameterization also leads to better generalization. Taken together, our studies show that m-PCE can provide very good accuracy at very low training cost, whereas a highly over-parameterized DeepONet can provide better accuracy and robustness to noise but at higher training cost. In both methods, the inference cost is negligible.

97 MATHEMATICS AND COMPUTING↗

Explainable machine learning for hydrogen diffusion in metals and random binary alloys

Hydrogen diffusion in metals and alloys plays an important role in the discovery of new materials for fuel cell and energy storage technology. While analytic models use hand-selected features that have clear physical ties to hydrogen diffusion, they often lack accuracy when making quantitative predictions. Machine learning models are capable of making accurate predictions, but their inner workings are obscured, rendering it unclear which physical features are truly important. To develop interpretable machine learning models to predict the activation energies of hydrogen diffusion in metals and random binary alloys, we create a database for physical and chemical properties of the species and use it to fit six machine learning models. Our models achieve root-mean-squared errors between 98–119 meV on the testing data and accurately predict that elemental Ru has a large activation energy, while elemental Cr and Fe have small activation energies. By analyzing the feature importances of these fitted models, we identify relevant physical properties for predicting hydrogen diffusivity. While metrics for measuring the individual feature importances for machine learning models exist, correlations between the features lead to disagreement between models and limit the conclusions that can be drawn. Instead grouped feature importance, formed by combining the features via their correlations, agree across the six models and reveal that the two groups containing the packing factor and electronic specific heat are particularly significant for predicting hydrogen diffusion in metals and random binary alloys. In conclusion, this framework allows us to interpret machine learning models and enables rapid screening of new materials with the desired rates of hydrogen diffusion.

36 MATERIALS SCIENCE↗

Probing the Effects of External Irradiation on Low-Mass Protostars Through Unbiased Line Surveys

The envelopes of molecular gas around embedded low-mass protostars show different chemistries, which can be used to trace their formation history and physical conditions. The excitation conditions of some molecular species can also be used to trace these physical conditions, making it possible to constrain for instance sources of heating and excitation. Aims. We study the range of influence of an intermediate-mass Herbig Be protostar. We also study the effect of feedback from the environment on the chemical and physical properties of embedded protostars. Methods. We followed up on an earlier line survey of the Class 0I source R CrA IRS7B in the 0.8 mm window with an unbiased line survey of the same source in the 1.3 mm window using the Atacama Pathfinder Experiment (APEX) telescope. We also studied the excitation of the key species H2CO, CH3OH, and c-C3H2 in a complete sample of the 18 embedded protostars in the Corona Australis star-forming region. Radiative transfer models were employed to establish abundances of the molecular species. Results. We detect line emission from 20 molecular species (32 including isotopologues) in the two surveys. The most complex species detected are CH3OH, CH3CCH, CH3CHO, and CH3CN (the latter two are only tentatively detected). CH3CN and several other complex organic molecules are significantly under-abundant in comparison with what is found towards hot corino protostars. The H2CO rotational temperatures of the sources in the region decrease with the distance to the Herbig Be star R CrA, whereas the c-C3H2 temperatures remain constant across the star-forming region.Conclusions. The high H2CO temperatures observed towards objects close to R CrA suggest that this star has a sphere of influence of several 10 000 AU in which it increases the temperature of the molecular gas to 3050 K through irradiation. The chemistry in the IRS7B envelope differs significantly from many other embedded protostars, which could be an effect of the external irradiation from R CrA.

ISM: individual objects↗

Computation of thermo-chemical nonequilibrium Martian atmospheric entry flows

The aerothermodynamics of a Martian atmospheric entry trajectory are studied. A chemical kinetics model for the CO2-N2 mixture found in the Martian atmosphere is implemented in a two-dimensional computational fluid dynamics method. The gas mixture is allowed to be in thermo-chemical nonequilibrium and to be composed of eight species characterized by two temperatures. The CO2 reaction model is validated by comparing computations to experimental results. Results for typical Martian entry conditions are presented and limitations of the current thermophysical model are discussed.

Candler, Graham V.↗

Development of the Gecko (Pachydactylus turneri) Animal Model during Foton M-2 to Study Comparative Effects of Microgravity in Terrestrial and Aquatic Organisms

Terrestrial organisms exposed to microgravity during spaceflight experience degeneration in bone, muscle, and possibly other tissues that require gravity-mediated mechanical stimulation for normal regenerative growth. In the Gecko experiment aboard Foton M-2, we flew for the first time, five terrestrial Pachydactylus turneri specimens to develop a model of microgravity effects comparable to the newt Pleurodeles waltl, a well-established model organism for spaceflight. These lower vertebrate species have similar body plans and size, are poikilothermic, have tissue regenerative ability, and are adapted to moderate periods of fasting. Furthermore the gecko (Pachydactylus) can also survive prolonged periods without water. In pre-flight control experiments and after a 16-day Foton M-2 spaceflight without food or water, the geckos were recovered and showed no apparent negative health effects. However, detailed analysis of bone mass and architecture by micro Computed Tomography { pCT), showed that both synchronous control and spaceflight animals lost significant amounts of cancellous bone in the distal femur and humerus relative to basal controls. In addition, cell cycle analysis of 30h post-flight liver tissue reveals a shift of DNA content from G2 and S to G1, both in spaceflight and synchronous controls. Together, these results suggest that housing conditions alone induce rapid catabolism of cancellous bone and reduced normal tissue regeneration. Further use of the gecko Puchydactylus turneri as a spaceflight model requires modification of housing conditions, possibly by including water and food, or changing other factors such as eliminating housing stresses to obtain stable bone structure and tissue regeneration during spaceflight experiments.

Almeida, E. A.↗

Ly(alpha) Photolysis in the Primitive Solar Nebula

This is the final report for the third year of work on this project. Our proposal was to quantitatively investigate the importance of photochemistry in the solar nebula. In the generally accepted theory for the chemical evolution of the primitive solar nebula, Prinn and Fegley argued that photochemistry is unimportant, and that thermochemistry controls the relative abundances of molecular species throughout the planet-forming region. They provided useful estimates of the chemical energy available to the solar nebula from a variety of sources, and established that even the small photolysis rate due to starlight is more important than the photolysis rate from direct sunlight (although small, the UV flux from starlight could have processed a non-negligible fraction of the solar nebula. The reason for this is that the opacity of the disk was so large that direct sunlight could only penetrate to 0.1 AU or so, despite the expectation that the protosun, if comparable to a T-Tauri star, would be emitting up to 10(exp 4) more H I Ly(alpha) photons than the current sun. We developed a Monte Carlo resonance fine radiative transfer code, capable of accurately calculating the radiation field of H I Ly(alpha), He I 584 A, and He II 304 A emissions throughout the nebula and the nearby interstellar medium in which it is embedded. We applied the code to two appropriate models of the primitive solar nebula. Our model provided the photolysis rates of various species over the entire surface layer of the nebula, and from this we evaluated the importance of UV photochemistry due to backscattered solar UV resonance line emissions on different parts of the nebula. The results discussed below were presented.

Gladstone, G. Randall↗

P/Halley - Effects of time-dependent production rates on spatial emission profiles

Spatial profiles of C2, CN, NH2, and O(D-1) in Comet P/Halley taken on 1986 March 1.54 and 2.55 and April 14.32 and 15.30 clearly show the effect of the 7 day periodic variation seen in photometric observations. With a time-dependent model based upon the light curve and employing standard scale lengths for each species reduced to the appropriate heliocentric distance, we are able to reproduce the highly variable profiles for all species. We computed the phase lag and amplitude correction between the actual gas production at the nucleus and the temporal/spatial filter imposed by the finite aperture photometry. For early March we find a phase lag and amplitude correction of 12 hr and -9 percent, respectively, whereas in mid-April the values are 6 hr and -27 percent. The same phase lag and amplitude correction work equally well for all four species despite their wide variation in photochemical lifetimes for production and decay. The same model integrated over circular apertures is able to reproduce the entire published March and April photometric light curves for C2. Our results require the use of the 7.60 day period for the March data as opposed to the 7.37 day period that is relevant for the April data, in agreement with the published analysis of the photometric data. Our results will help to reconcile the placement of active areas on the surface of Halley's comet with various remote observations and spacecraft images of the nucleus.

Combi, Michael R.↗

Very Large Eddy Simulations of a Jet-A Spray Reacting Flow in a Single Element LDI Injector With and Without Invoking an Eulerian Scalar DWFDF Method

This paper presents the very large eddy simulations (VLES) of a Jet-A spray reacting flow in a single element lean direct injection (LDI) injector by using the National Combustion Code (NCC) with and without invoking the Eulerian scalar DWFDF method, in which DWFDF is defined as the density weighted time filtered fine grained probability density function. The flow field is calculated by using the time filtered compressible Navier-Stokes equations (TFNS) with nonlinear subscale turbulence models, and when the Eulerian scalar DWFDF method is invoked, the energy and species mass fractions are calculated by solving the equation of DWFDF. A nonlinear subscale model for closing the convection term of the Eulerian scalar DWFDF equation is used and will be briefly described in this paper. Detailed comparisons between the results and available experimental data are carried out. Some positive findings of invoking the Eulerian scalar DWFDF method in both improving the simulation quality and maintaining economic computing cost are observed.

Shih, Tsan-Hsing↗

Two-color scattering for the measurement of neutrals at the edge of fusion devices

Laser two-color scattering (TCS) is proposed to detect the neutral species in the edge of fusion devices, namely, tokamaks. Here, TCS uses two wavelengths to probe both the laser Rayleigh scattering and Thomson scattering of the neutral-electron bath, with emphasis on neutral density measurements such as that of hydrogen and deuterium. Modeling of the Rayleigh scattering of tokamak neutral species under various plasma conditions (electron density and temperature) shows that, with an appropriate filtering of the Thomson signal and by going to ultraviolet-region wavelengths, identification of the Rayleigh signal can be achieved. Photon count and signal fractions are calculated in two test cases, one in the midplane region of the National Spherical Torus Experiment and one in the divertor region of DIII-D. An uncertainty analysis and discussion of the feasibility of the TCS diagnostic is also presented.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

The use of a benign fast-growing cyanobacterial species to control microcystin synthesis from Microcystis aeruginosa

Introduction Microcystis aeruginosa(M. aeruginosa), one of the most abundant blue-green algae in aquatic environments, produces microcystin by causing harmful algal blooms (HABs). This study investigated the combined effects of nutrients and competition among cyanobacterial subpopulations on the synthesis of microcystin-LR. Methods Under varying nitrogen and phosphorus concentrations, cyanobacterial coculture, and the presence of algicidal DCMU, the growth was monitored by optical density analysis or microscopic counting, and the microcystin production was analyzed using high-performance liquid chromatography-UV. Furthermore, growth and toxin production were predicted using a kinetic model. Results and discussion First, coculture with the fast-growing cyanobacteriumSynechococcus elongatusUTEX 2973 (S. elongatus) reducedM. aeruginosabiomass and microcystin production at 30°C. Under high nitrogen and low phosphorus conditions,S. elongatuswas most effective, limitingM. aeruginosagrowth and toxin synthesis by up to 94.7% and 92.4%, respectively. Second, this biological strategy became less effective at 23°C, whereS. elongatusgrew more slowly. Third, the photosynthesis inhibitor DCMU (3-(3,4-dichlorophenyl)-1,1-dimethylurea) inhibitedM. aeruginosagrowth (at 0.1 mg/L) and microcystin production (at 0.02 mg/L). DCMU was also effective in controlling microcystin production inS. elongatus–M. aeruginosacocultures. Based on the experimental results, a multi-substrate, multi-species kinetic model was built to describe coculture growth and population interactions. Conclusion Microcystin from representative toxin-producingM. aeruginosacan be controlled by coculturing fast-growing benign cyanobacteria, which can be made even more efficient if appropriate algicide is applied. This study improved the understanding of the biological control of microcystin production under complex environmental conditions.

Microbiology↗

ESO Diffuse Interstellar Bands Large Exploration Survey (EDIBLES) - Merging Observations and Laboratory Data

The Diffuse Interstellar Bands (DIBs) are a set of ~500 absorption bands that are detected in the spectra of stars with interstellar clouds in the line of sight. DIBs are found from the NUV to the NIR in the spectra of reddened stars spanning different interstellar environments in our local, and in other galaxies. DIB carriers are a significant part of the interstellar chemical inventory. They are stable and ubiquitous in a broad variety of environments and play a unique role in interstellar physics/chemistry. It has long been realized that the solving of the DIB problem requires a strong synergy between astronomical observations, laboratory astrophysics, and astrophysical modeling of line-of-sights. PAHs are among the molecular species that have been proposed as DIB carriers. We will present an assessment of the PAH-DIB model in view of the progress and the advances that have been achieved over the past years through a series of studies involving astronomical observations of DIBs, laboratory simulation of interstellar analogs for neutrals and ionized PAHs, theoretical calculations of PAH spectra and the modelization of diffuse and translucent interstellar clouds. We will present a summary of what has been learned from these complementary studies, the constraints that can now be derived for the PAHs as DIB carriers in the context of the PAH-DIB model and how these constraints can be applied to the EDIBLES project. The spectra of several neutral and ionized PAHs isolated in the gas phase at low temperature have been measured in the laboratory under experimental conditions that mimic interstellar conditions and are compared with an extensive set of astronomical spectra of reddened, early type stars. The comparisons of astronomical and laboratory data provide upper limits for the abundances of specific neutral PAH molecules and ions along specific lines-of-sight. Something that is not attainable from infrared observations alone. We present the characteristics of the laboratory facilities, MIS and COSmIC, that have been developed for this study and discuss the findings resulting from the comparison of the laboratory data with high resolution, high S/N ratio astronomical observations. MIS stands for Matrix Isolation Spectroscopy, a well-proven technique for isolating cold molecular species in inert solid environments. COSmIC stands for Cosmic Simulation Chamber. It combines a supersonic free jet expansion with discharge plasma and high-sensitivity cavity ringdown spectroscopy and time-of-flight mass spectrometry detection tools for the generation and the detection of cold, isolated gas-phase molecules and ions under experimental conditions that closely mimic interstellar conditions. The column densities of the individual neutral PAH molecules and ions probed in these surveys are derived from the comparison of these unique laboratory data with high resolution, high S/N ratio astronomical observations. The comparisons of astronomical and laboratory data lead to clear and unambiguous conclusions regarding the expected abundances for PAHs of various sizes and charge states in the interstellar environments probed in the surveys. Band profile comparisons between laboratory and astronomical spectra lead to information regarding the molecular structures and characteristics associated with the DIB carriers in the corresponding lines-of-sight. These quantitative surveys of neutral and ionized PAHs in the optical range open the way for unambiguous quantitative searches of PAHs and complex organics in a variety of interstellar and circumstellar environments.

astrophysics↗

Simulations of the HDO and H2O-18 atmospheric cycles using the NASA GISS general circulation model - The seasonal cycle for present-day conditions

The cycles of the water isotopic species (HDO and H2O-18) have been incorporated into the NASA Goddard Institute for Space Studies atmospheric general circulation model (GCM). The results of a three-year simulation for present-day conditions are discussed, with special emphasis on the comparison between predicted and observed isotopic distributions for both the seasonal and annual time scales. The observed seasonal cycles are generally well simulated. For the annual scale the observed linear relationship between delta O-18 and the surface temperature at middle and high latitudes, as well as the absence of any correlation between these fields in tropical and equatorial regions, are properly obeyed by the GCM simulation. In the tropical and equatorial regions the delta O-18 patterns for both observations and the GCM are influenced by the amount of rainfall. There is excellent agreement between the simulated and observed delta D-delta O-18 relationship throughout the world.

Jouzel, J.↗

Machine Learning Application to Atmospheric Chemistry Modeling

Atmospheric chemistry is a high-dimensionality, large-data problem and thus may be suited to machine-learning algorithms. We show here the potential of a random forest regression algorithm to replace the gas-phase chemistry solver in the GEOS-Chem chemistry model. In this proof-of-concept study, we used one month of model output to train random forest regression models to predict the concentrations of each long-lived chemical species after integration based upon the physical and chemical conditions before the chemical integration. The choice of prediction type has a strong impact on the skill of the regression model. We find best results from predicting the change in concentration for very long-lived species and the absolute concentration for shorter lived species. The skill of the machine learning algorithm is further improved by using a family approach for NO and NO2 rather than treating them independently.By replacing the numerical integrator with the random forest algorithm and running this model for one month, we find that the model is able to reproduce many of the features of the reference chemistry simulation. Replacing the integration methodology with a machine learning algorithm has the potential to be substantially faster. There are a wide range of applications for such an approach, e.g. to generate boundary conditions, for use in air quality forecasts or chemical data assimilation systems, etc.

Keller, Christoph A.↗

SAM Code Development for Transient Safety Analyses of Fluoride-salt-cooled High-temperature Reactors

The System Analysis Module (SAM) is under development at Argonne National Laboratory as a modern system-level modeling and simulation tool for advanced non-light water reactor safety analyses. It utilizes the object-oriented application framework MOOSE to leverage the modern software environment and advanced numerical methods. The capabilities of SAM are being extended to enable the transient modeling, analysis, and design of various advanced nuclear reactor systems. The molten-salt-cooled pebble-bed reactor, or pebble-bed FHR (PB-FHR) is a promising candidate among advanced nuclear reactor concepts with its improved passive safety characteristics and high thermal efficiency. To support the development and utilization of the SAM code for PB-FHR safety analysis, activities on SAM code enhancements, reference plant model developments, and code validations have been performed in the past a few years to support near-term industry and NRC needs. This report summarizes recent progress under DOE-NE’s Nuclear Energy Advanced Modeling and Simulation program in SAM code development and demonstration for transient safety analysis of Fluoride-salt-cooled High-temperature Reactors. SAM capabilities has been significantly enhanced over the years to add FHR specific modeling features, including salt freezing and thawing, spherical core channel and pebble bed core modeling, solid-fluid thermal radiation, tritium transport and general species transport in fluids and solids, and the general code enhancements on solver schemes of point kinetics module and reactivity feedback models. A reference PB-FHR model is developed, based on publicly available information from Kairos Power’s generic FHR design and the University of California, Berkeley (UCB) Mk1 design. A reference reactor model is foundational to the methodologies employed by NRC to verify the adequacy of computer codes and evaluation models. The reference FHR model was utilized for a number of selected FHR design basis accidents, including station blackout, loss of heat sink, loss of flow, transient overpower, and overcooling events.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Droplet burning of n-butyl acetate/n-heptane mixtures in the standard atmosphere: experiments and numerical modeling

Blending petroleum fuels with oxygenates is a common approach to stem the depletion of crude oil while also mitigating the impact of their combustion on the environment. It has recently been considered that n-butyl acetate (BA, C6H12O2 , boiling point of 399K) could be a viable oxygenate additive to diesel fuel. In this application it is important to determine the influence of the fractional amount of BA on burning of the mixture. This presentation considers this problem from an experimental and computational approach using n-heptane (C7H14 , boiling point of 372K) as an essentially single component surrogate for diesel fuel. The burning configuration considered was ostensibly spherical symmetry as promoted by burning droplets under conditions where forced and natural convection effects were minimized. In this configuration the droplet and flame are concentric spheres and soot aggregates are trapped in a shell structure between the droplet and flame. Measurements were made of the droplet, flame and soot shell diameters through video imaging of the burning process. The experimental results were used to validate a detailed numerical model of the spherically symmetric droplet burning process that incorporated a consistent combustion kinetic mechanism for BA/heptane mixtures, comprised of 402 species and 16,872 reactions inclusive of soot chemistry. A model for soot formation was also included in the simulation to predict formation of the soot shell. The simulations agreed well with measured droplet and flame diameters. It was found both experimentally and computationally that adding BA to heptane had a minimal effect on the mixture burning rate, while the flame was positioned closer to the droplet surface and the simulated soot volume fraction decreased. The implications of these results are discussed for using BA as a potential additive to diesel fuel.

09 BIOMASS FUELS↗

Radar modeling of tropical mangal forest stands

Radar modeling of mangal forest stands in the Sundarbans area of southern Bangladesh is discussed. The modeling uses radar system parameters with forest data on tree height, spacing, biomass, species combinations, and water content (including slightly conductive water) in leaves and trunks of the mangal. For Sundri and Gewa tropical mangal forests, six model components are proposed; the models are required to explain the contributions of various combinations of forest species in the attenuation and scattering of mangal-vegetated nonflooded or flooded surfaces. Statistical data of simulated images have been compared with those of SIR-B images both to refine the modeling procedures and to characterize the model output appropriately. The possibility of delineation of flooded or nonflooded boundaries is discussed.

Wang, Yong↗

Degradation of Silica and Sapphire Windows at Elevated Temperatures

Silica and sapphire are very stable oxide materials. However, at high temperatures they are both susceptible to chemical degradation by three major mechanisms: (1) Deposition of fluxing oxides (2) Non-reactive vaporization (3) Reactive vaporization, particularly by water vapor. In order to model and predict each of these, accurate thermodynamic data and information on the environment are needed. Experimental and theoretical methods used at NASA for identifying the generated gas species and obtaining the relevant thermochemical data are discussed. Modeling and prediction of degradation are discussed for different environments and flow conditions. In addition, surface devitrification or etch pitting is likely under some conditions.

Mass spectrometry↗

DFT Calculation of Thermal Expansion within Debye-Grüneisen Framework Made Simple and Accurate

The density functional theory (DFT) based Debye-Grüneisen approach is a computational method used to calculate the thermodynamic properties of materials by relating the volume dependence of the Debye frequency to the Grüneisen parameter. In this study, we propose a new model to describe the volume dependence of the Grüneisen parameter. This model offers a simple yet accurate approach to predict the thermal expansion of materials within the framework of the Debye-Grüneisen theory. Specifically, for pure elements or species used as a reference system, we calibrated the parameters to reproduce the experimental coefficient of thermal expansion, heat capacity, and entropy. For compounds with arbitrary compositions, the parameters are determined by taking the arithmetic or geometric average of those obtained from the pure elements or species based on their composition. We then compared the model prediction with experiments. This allowed for a comprehensive characterization of the thermal expansion behavior of various materials.

Wang, Yi↗