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At least 1,153 records · Page 64

Degree of rate control and De Donder relations – An interpretation based on transition state theory

We describe sensitivities of elementary steps as salient parameters in determining the rate determining character of elementary steps within a reaction network and develop a formalism wherein the overall composite reaction is described by an apparent rate-determining step that is a sensitivity-weighted average of the elementary steps that comprise the reaction. Reaction parameters—apparent reaction orders, apparent enthalpy and entropy of activation—of the composite reaction network are determined within the framework we develop by application of transition state theory to the apparent rate-determining step. From this formalism we develop methods for determination of surface coverages by measuring only reaction orders, novel methods for discrimination between proposed mechanisms, a proof that the kinetic degrees of rate control sum to unity, and a proof for the relationship between fractional coverages and thermodynamic degrees of rate control. Two complementary formalisms for identifying rate-limiting transition states are broadly employed in chemical kinetics—De Donder relations based on measuring the thermodynamic driving forces of elementary steps during reaction and degrees of rate control based on knowledge of the kinetics of elementary reaction steps. Here, the formalism developed herein unifies these two strategies to elucidate in the most general case a relationship between the thermodynamic driving forces of elementary steps captured by the reversibilities and the kinetic and thermodynamic degrees of rate control.

42 ENGINEERING↗

Recommendations to standardize reporting, execution and interpretation of STEM/TEM measurements

In July of 2022, a National Science Foundation (NSF)- and US Department of Energy (DOE)-sponsored workshop was held on the topic of rigor and reproducibility (R&R) in thermal, heterogeneous catalysis. A report has been published entitled “Addressing Rigor and Reproducibility in Thermal, Heterogeneous Catalysis” as a result of the workshop [1]. This manuscript attempts to summarize one section of the report entitled Recommendations for catalyst characterization by transmission electron microscopy.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Interpreting experimental measurements of helium bubbles using stochastic cluster dynamics models of heterogeneous nucleation and growth in irradiated ferritic alloys

Among a number of other advantageous features, ferritic/martensitic steels are being considered as fusion reactor structural materials due to their low intrinsic swelling under irradiation. However, under high-energy neutron irradiation, He produced through (n, α) reactions stabilizes vacancy clusters, which then act as seeds for bubble formation and growth, negating the intrinsic swelling resistance of these alloys. Standard models of irradiation damage accumulation and microstructural evolution consider homogeneous nucleation as the basis for bubble formation and growth. However, this generally does not explain the large bubble densities and sizes observed experimentally under a number of different conditions. Here, we propose a more realistic physical model of bubble nucleation, formation, and growth designed to capture recent experimental measurements of He-bubble formation and evolution during co-implantation of He and Fe ions in model ferritic alloys. We find that experimental results are explained only when the following three features are considered simultaneously: (i) heterogeneous nucleation of He-vacancy bubbles at defect sinks (e.g., dislocations, grain boundaries, and second-phase precipitates), (ii) nucleation and growth of bubbles via the ‘trap mutation’ mechanism (i.e., spontaneous production of Frenkel pairs due to absorption of He atoms), and (iii) transition from a growth-limited, He-stabilized bubble regime to a ‘runaway’ void-type growth scenario. The model is implemented into a stochastic cluster dynamics framework that takes advantage of cluster size grouping methods to accelerate the simulations, allowing us to reach 10 dpa of simulated irradiated dose, and to capture cluster sizes in excess of 20 nm. Further, a careful extrapolation exercise conducted assuming classical nucleation theory leads to excellent agreement with the experimental measurements at 50 dpa of irradiation.

36 MATERIALS SCIENCE↗

Coupled theoretical interpretation and experimental investigation of the anisotropy of the lattice thermal conductivity of Bi{sub 2}Te{sub 3} single crystal

The Debye model is modified for the calculation of the lattice thermal conductivity and used to gain insight into the anisotropy of Bi{sub 2}Te{sub 3}. In this work, the Debye temperature is not used to estimate the cutoff frequencies of the phonons that carry heat. The cutoff frequencies are defined by setting an upper limit to the energy of acoustic phonons using the complete dispersion relations. The anisotropy of the thermal conductivity is found to be unrelated to the anisotropy of the sound velocities. It is found that the sound velocity is almost isotropic when the longitudinal and two transversal waves are added together. In addition the relaxation time must be a function of the cutoff frequencies and counterbalances the anisotropy arising from the variation of the number of acoustic phonons traveling in various directions. It is concluded that the anisotropy of the thermal conductivity is mostly related to the Grueneisen's constant. - Graphical abstract: Dispersion relations of Bi{sub 2}Te{sub 3} along c-axis. The cutoff frequencies are found to be anisotropic and are defined exactly in this article where the acoustic branch crosses the optical branch. This affects both the number of phonons that carry heat in a given direction and the number of phonons that can scatter them. This is decisive for understanding the lattice thermal conductivity. Highlights: Black-Right-Pointing-Pointer Prediction of the anisotropy of the lattice thermal conductivity. Black-Right-Pointing-Pointer Provide a definition of the cutoff frequencies that makes sense. Black-Right-Pointing-Pointer Reduction of the number of frees parameter in phenomenological model. Black-Right-Pointing-Pointer Prediction that the anisotropy is a function of the scattering mechanism. Black-Right-Pointing-Pointer Means of experimental verification of theory.

36 MATERIALS SCIENCE↗

Metallography and microstructure interpretation of some archaeological tin bronze vessels from Iran

Archaeological excavations in western Iran have recently revealed a significant Luristan Bronzes collection from Sangtarashan archaeological site. The site and its bronze collection are dated to Iron Age II/III of western Iran (10th–7th century BC) according to archaeological research. Alloy composition, microstructure and manufacturing technique of some sheet metal vessels are determined to reveal metallurgical processes in western Iran in the first millennium BC. Experimental analyses were carried out using Scanning Electron Microscopy–Energy Dispersive X-ray Spectroscopy and Optical Microscopy/Metallography methods. The results allowed reconstructing the manufacturing process of bronze vessels in Luristan. It proved that the samples have been manufactured with a binary copper–tin alloy with a variable tin content that may relates to the application of an uncontrolled procedure to make bronze alloy (e.g. co-smelting or cementation). The presence of elongated copper sulphide inclusions showed probable use of copper sulphide ores for metal production and smelting. Based on metallographic studies, a cycle of cold working and annealing was used to shape the bronze vessels. - Highlights: • Sangtarashan vessels are made by variable Cu-Sn alloys with some impurities. • Various compositions occurred due to applying uncontrolled smelting methods. • The microstructure represents thermo-mechanical process to shape bronze vessels. • In one case, the annealing didn’t remove the eutectoid remaining from casting. • The characteristics of the bronzes are similar to other Iron Age Luristan Bronzes.

36 MATERIALS SCIENCE↗

GMFOLD: Subgraph matching for high-throughput DNA-aptamer secondary structure classification and machine learning interpretability

Aptamers are oligonucleotide receptors that bind to their targets with high affinity. Here, we consider aptamers comprised of single-stranded DNA that undergo target-binding-induced conformational changes, giving rise to unique secondary and tertiary structures. Given a specific aptamer primary sequence, there are well-established computational tools (notably mfold) to predict the secondary structure via free energy minimization algorithms. While mfold generates secondary structures for individual sequences, there is a need for a high-throughput process whereby thousands of DNA structures can be predicted in real-time for use in an interactive setting, when combined with aptamer selections that generate candidate pools that are too large to be experimentally interrogated. We developed a new Python code for high-throughput aptamer secondary structure determination (GMfold). GMfold uses subgraph matching methods to group aptamer candidates by secondary structure similarities. We also improve an open-source code, SeqFold, to incorporate subgraph matching concepts. We represent each secondary structure as a lowest-energy bipartite subgraph matching of the DNA graph to itself. These new tools enable thousands of DNA sequences to be compared based on their secondary structures, using machine-learning algorithms. This process is advantageous when analyzing sequences that arise from aptamer selections via systematic evolution of ligands by exponential enrichment (SELEX). This work is a building block for future machine-learning-informed DNA-aptamer selection processes to identify aptamers with improved target affinity and selectivity and advance aptamer biosensors and therapeutics.

Aptamer↗

A mechanistic interpretation of Nelson curves for PVP failures under high temperature hydrogen attack

As an empirically established design criterion, Nelson curves that relate the service temperature and the allowable hydrogen partial pressure have been developed and utilized for more than sixty years in pressure vessels and piping (PVP) safety design. Despite a relatively clear thermodynamic understanding of the high-temperature-hydrogen-attack (HTHA) problem, the detailed fracture process on the microstructural length scales, however, remains elusive, and a quantitative assessment of the PVP lifetime under HTHA from the available creep fracture dataset is still not possible. This work develops a microstructure-informed and micromechanics-based model by incorporating a synergy between hydrogen transport and intergranular-cavity-based fracture process. Based on the available creep lifetime data of C-0.5Mo steels, we are able to calibrate material constitutive parameters, and then conduct nonlinear finite element simulations that reveal a real-time stress-induced hydrogen diffusional transport along grain boundaries, coupled with a microstructure-explicit failure process, from which Nelson curves can be computed. Such failure analyses allow us to delineate two distinct regimes on the Nelson curves, i.e., dislocation-creep-controlled or grain boundary diffusion-assisted cavity growth. More importantly, we found that a small change of the pipe thickness and applied stresses can significantly shift these lifetime curves. However, these two parameters are usually not provided in Nelson curves, thus limiting their usage in material selection and safety design. In conclusion, this discrepancy can clearly be mitigated by extensive parametric studies from our micromechanical modeling/simulation framework.

36 MATERIALS SCIENCE↗