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At least 1,153 records · Page 64

FGFR antagonist induces protective autophagy in FGFR1-amplified breast cancer cell

Breast cancer, representing approximately 30% of all gynecological cancer cases diagnosed yearly, is a leading cause of cancer-related mortality for women. Amplification of FGFR1 is frequently observed in breast cancers and is associated with poor prognosis. Though FGFRs have long been considered as anti-cancer drug targets, and a cluster of FGFR antagonists are currently under clinical trials, the precise cellular responses under the treatment of FGFR antagonists remains unclear. Here, we show that PD166866, an FGFR1-selective inhibitor, inhibits proliferation and triggers anoikis in FGFR1-amplified breast cancer cell lines. Notably, we demonstrate that PD166866 induces autophagy in FGFR1-amplified breast cancer cell lines, while blockage of autophagy by Atg5 knockdown further enhances the anti-proliferative activities of PD166866. Moreover, mechanistic study reveals that PD166866 induces autophagy through repressing Akt/mTOR signaling pathway. Together, the present study provides new insights into the molecular mechanisms underlying the anti-tumor activities of FGFR antagonists, and may further assist the FGFRs-based drug discovery. -- Highlights: •FGFR1 antagonist inhibits cell viability in FGFR1-amplified breast cancer cells. •FGFR1 antagonist induces autophagy in FGFR1-amplified breast cancer cells. •FGFR1 antagonist-induced autophagy is protective. •FGFR1 antagonist induces autophagy by inhibiting Akt/mTOR pathway.

60 APPLIED LIFE SCIENCES↗

Pim-3 contributes to radioresistance through regulation of the cell cycle and DNA damage repair in pancreatic cancer cells

Resistance of cancer cells to chemoradiotherapy is a major clinical problem in pancreatic cancer treatment. Therefore, understanding the molecular basis of cellular resistance and identifying novel targets are essential for improving treatment efficacy for pancreatic cancer patients. Previous studies have demonstrated a significant role for Pim-3 in pancreatic cancer survival against gemcitabine-induced genotoxic stress. Here, we observed that radiation treatment enhanced Pim-3 expression in human pancreatic cancer cells in vitro. Stable overexpression of Pim-3 in pancreatic cancer cells significantly protected cells against radiation treatment by attenuating G2/M phase cell cycle arrest and DNA damage response. Silencing of Pim-3 expression significantly elevated the phosphorylation of histone variant H2AX, a marker of DNA double strand breaks, and decreased the activation of ataxia-telangiectasia-mutated (ATM) kinase, along with its downstream targets, eventually enhancing the radiosensitivity of human pancreatic cancer cells in vitro and in vivo. Hence, we demonstrated a novel function for Pim-3 in human pancreatic cancer cell survival against radiation. Targeting Pim-3 may be a promising way to improve treatment efficacy in combination with radiotherapy in human pancreatic cancer. - Highlights: • This is first study to demonstrate that Pim-3 is endogenously induced by ionizing radiation in pancreatic cancer cells, and Pim-3 overexpression enhanced radioresistance of pancreatic cancer cells both in vitro and in vivo. • This is first study to provide evidence that radioresistance induced by Pim-3 is mainly attributed to Pim-3 induces activation of ATM, which subsequently activates checkpoint 1, leading to amplification of DNA repair through cell cycle arrest and DNA repair pathways. • This is first study to indicate that targeting Pim-3 may be a promising strategy to provide better treatment efficacy in combination with radiotherapy in human pancreatic cancer.

60 APPLIED LIFE SCIENCES↗

Shot noise sets the limit of quantification in electrochemical measurements

Detection of single molecules, particles, and rapid redox events is a challenge of electrochemical investigations and requires either an amplification strategy or significant averaging for the electrochemical current to exceed the noise level. We consider the minimum number of electrons required to reach the limit of quantification in these electrochemical measurements. A survey of the literature indicates that the state-of-the-art limit in current detection for different types of measurements (e.g. voltammetry, single-molecule redox cycling, ion channel recordings of single molecules, metal nanoparticle collision, and phase nucleation) is independent of the nature of the measurement and increases linearly with reciprocal response time, Δt -1 , over ~5 orders of magnitude (from ~10 to ~10 6 s -1 ). This paper demonstrates that the practical limit of quantification requires cumulative measurement of ~2100 electrons during Δt and is determined by statistics of counting electrons, that is, the shot noise in the current.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A robust absorbing layer method for anisotropic seismic wave modeling

When applied to wave propagation modeling in anisotropic media, Perfectly Matched Layers (PML) exhibit instabilities. Incoming waves are amplified instead of being absorbed. Overcoming this difficulty is crucial as in many seismic imaging applications, accounting accurately for the subsurface anisotropy is mandatory. In this study, we present the SMART layer method as an alternative to PML approach. This method is based on the decomposition of the wavefield into components propagating inward and outward the domain of interest. Only outgoing components are damped. We show that for elastic and acoustic wave propagation in Transverse Isotropic media, the SMART layer is unconditionally dissipative: no amplification of the wavefield is possible. The SMART layers are not perfectly matched, therefore less accurate than conventional PML. However, a reasonable increase of the layer size yields an accuracy similar to PML. Finally, we illustrate that the selective damping strategy on which is based the SMART method can prevent the generation of spurious S-waves by embedding the source in a small zone where only S-waves are damped.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

The E1 proteins

E1, an ATP-dependent DNA helicase, is the only enzyme encoded by papillomaviruses (PVs). It is essential for replication and amplification of the viral episome in the nucleus of infected cells. To do so, E1 assembles into a double-hexamer at the viral origin, unwinds DNA at the origin and ahead of the replication fork and interacts with cellular DNA replication factors. Biochemical and structural studies have revealed the assembly pathway of E1 at the origin and how the enzyme unwinds DNA using a spiral escalator mechanism. E1 is tightly regulated in vivo, in particular by post-translational modifications that restrict its accumulation in the nucleus. Here we review how different functional domains of E1 orchestrate viral DNA replication, with an emphasis on their interactions with substrate DNA, host DNA replication factors and modifying enzymes. These studies have made E1 one of the best characterized helicases and provided unique insights on how PVs usurp different host-cell machineries to replicate and amplify their genome in a tightly controlled manner. - Highlights: • The papillomavirus E1 helicase orchestrates replication of the viral DNA genome. • E1 assembles into a double-hexamer at the viral origin with the help of E2. • E1 interacts with cellular DNA replication factors. • E1 unwinds DNA using a spiral escalator mechanism. • Nuclear accumulation of E1 is regulated by post-translational modifications.

60 APPLIED LIFE SCIENCES↗

Isolation and characterization of a virus infecting the freshwater algae Chrysochromulina parva

Water samples from Lake Ontario, Canada were tested for lytic activity against the freshwater haptophyte algae Chrysochromulina parva. A filterable lytic agent was isolated and identified as a virus via transmission electron microscopy and molecular methods. The virus, CpV-BQ1, is icosahedral, ca. 145 nm in diameter, assembled within the cytoplasm, and has a genome size of ca. 485 kb. Sequences obtained through PCR-amplification of DNA polymerase (polB) genes clustered among sequences from the family Phycodnaviridae, whereas major capsid protein (MCP) sequences clustered among sequences from either the Phycodnaviridae or Mimiviridae. Based on quantitative molecular assays, C. parva's abundance in Lake Ontario was relatively stable, yet CpV-BQ1's abundance was variable suggesting complex virus-host dynamics. This study demonstrates that CpV-BQ1 is a member of the proposed order Megavirales with characteristics of both phycodnaviruses and mimiviruses indicating that, in addition to its complex ecological dynamics, it also has a complex evolutionary history. - Highlights: • A virus infecting the algae C. parva was isolated from Lake Ontario. • Virus characteristics demonstrated that this novel virus is an NCLDV. • The virus's polB sequence suggests taxonomic affiliation with the Phycodnaviridae. • The virus's capsid protein sequences also suggest Mimiviridae ancestry. • Surveys of host and virus natural abundances revealed complex host–virus dynamics.

60 APPLIED LIFE SCIENCES↗

Lin28b stimulates the reprogramming of rat Müller glia to retinal progenitors

In lower-order vertebrates, Müller glia exhibit characteristics of retinal progenitor cells, while in higher vertebrates, such as mammals, the regenerative capacity of Müller glia is limited. Recently, we reported that Lin28b promoted the trans-differentiation of Müller cells to rod photoreceptor and bipolar cells in the retina of retinitis pigmentosa rat model, whereas it is unclear whether Lin28b can stimulate the reprogramming of Müller glia in vitro for transplantation into a damaged retina. In the present study, Long-Evens rat Müller glia were infected with Adeno-Lin28b or Adeno-GFP. Over-expression of Lin28b in isolated rat Müller glia resulted in the suppression of GFAP expression, enhancement of cell proliferation and a significant increase of the expression of retinal progenitor markers 5 days after infection. Moreover, Lin28b caused a significant reduction of the Let-7 family of microRNAs. Following sub-retinal space transplantation, Müller glia-derived retinal progenitors improved b-wave amplification of 30d Royal College of Surgeons retinitis pigmentosa model (RCS-P+) rats, as detected by electroretinography (ERG) recordings. Taken together, these data suggest that the up-regulation of Lin28b expression facilitated the reprogramming of Müller cells toward characteristics of retinal progenitors. - Highlights: • Lin28b reprograms Müller glia to retinal progenitors. • Let-7 micrRNAs are suppressed by Lin28b. • Transplantation of reprogrammed Müller glia restores retinal function.

60 APPLIED LIFE SCIENCES↗

Technology development for ultraintense all-OPCPA systems

Optical parametric chirped-pulse amplification (OPCPA) [Dubietis et al. , Opt. Commun. 88 , 437 (1992)] implemented by multikilojoule Nd:glass pump lasers is a promising approach to produce ultraintense pulses ( ${>}10^{23}~\text{W}/\text{cm}^{2}$ ). Technologies are being developed to upgrade the OMEGA EP Laser System with the goal to pump an optical parametric amplifier line (EP OPAL) with two of the OMEGA EP beamlines. The resulting ultraintense pulses (1.5 kJ, 20 fs, $10^{24}~\text{W}/\text{cm}^{2}$ ) would be used jointly with picosecond and nanosecond pulses produced by the other two beamlines. A midscale OPAL pumped by the Multi-Terawatt (MTW) laser is being constructed to produce 7.5-J, 15-fs pulses and demonstrate scalable technologies suitable for the upgrade. MTW OPAL will share a target area with the MTW laser (50 J, 1 to 100 ps), enabling several joint-shot configurations. We report on the status of the MTW OPAL system, and the technology development required for this class of all-OPCPA laser system for ultraintense pulses.

47 OTHER INSTRUMENTATION↗

Understanding the Cold Season Arctic Surface Warming Trend in Recent Decades

Abstract Whether sea‐ice loss or lapse‐rate feedback dominates the Arctic amplification (AA) remains an open question. Analysis of data sets based upon observations reveals a 1.11 K per decade surface warming trend in the Arctic (70°–90°N) during 1979–2020 cold season (October–February) that is five times higher than the corresponding global mean. Based on surface energy budget analysis, we show that the largest contribution (∼82%) to this cold season warming trend is attributed to changes in clear‐sky downward longwave radiation. In contrast to that in Arctic summer and over tropics, a reduction in lower‐tropospheric inversions plays a unique role in explaining the reduction of the downward longwave radiation associated with atmospheric nonuniform temperature and corresponding moisture changes. Our analyses also suggest that Arctic lower‐tropospheric stability should be considered in conjunction with sea‐ice decline during the preceding warm season to explain AA.

54 ENVIRONMENTAL SCIENCES↗

Simple Hybrid Sea Ice Nudging Method for Improving Control Over Partitioning of Sea Ice Concentration and Thickness

Abstract To assess the effect of ocean‐atmosphere coupling in the climate response to forced sea ice loss, the Polar Amplification Model Intercomparison Project protocol includes centennial coupled atmosphere‐ocean general circulation model simulations with imposed sea ice loss. The protocol, which specifies sea ice concentration and thickness distribution targets, does not prescribe a method for achieving them. Although different methods for imposing sea ice loss (or growth) in models have been documented, testing of the method‐dependence of the resulting climate responses has been limited. Achieving the targeted sea ice state has proven to be challenging using the so‐called ghost‐flux nudging method, which induces ice melt from below, as this method does not constrain the partitioning between thickness and concentration. We propose, describe and test a simple method that combines the advantages of direct sea ice nudging and ghost‐flux nudging. The hybrid nudging method better captures the partitioning between thickness and concentration while conserving total water content. We document how this novel sea ice constraining method reaches specific targets, enhances surface turbulent heat flux responses to sea ice loss, and induces tropospheric warming for both polar regions.

54 ENVIRONMENTAL SCIENCES↗

Unique Temperature Trend Pattern Associated With Internally Driven Global Cooling and Arctic Warming During 1980–2022

Abstract Diagnosing the role of internal variability over recent decades is critically important for both model validation and projections of future warming. Recent research suggests that for 1980–2022 internal variability manifested as Global Cooling and Arctic Warming (i‐GCAW), leading to enhanced Arctic Amplification (AA), and suppressed global warming over this period. Here we show that such an i‐GCAW is rare in CMIP6 large ensembles, but simulations that do produce similar i‐GCAW exhibit a unique and robust internally driven global surface air temperature (SAT) trend pattern. This unique SAT trend pattern features enhanced warming in the Barents and Kara Sea and cooling in the Tropical Eastern Pacific and Southern Ocean. Given that these features are imprinted in the observed record over recent decades, this work suggests that internal variability makes a crucial contribution to the discrepancy between observations and model‐simulated forced SAT trend patterns.

54 ENVIRONMENTAL SCIENCES↗

LAMP detection assays for boxwood blight pathogens: A comparative genomics approach

Rapid and accurate molecular diagnostic tools are critical to efforts to minimize the impact and spread of emergent pathogens. The identification of diagnostic markers for novel pathogens presents several challenges, especially in the absence of information about population diversity and where genetic resources are limited. The objective of this study was to use comparative genomics datasets to find unique target regions suitable for the diagnosis of two fungal species causing a newly emergent blight disease of boxwood. Candidate marker regions for loop-mediated isothermal amplification (LAMP) assays were identified from draft genomes of Calonectria henricotiae and C. pseudonaviculata , as well as three related species not associated with this disease. To increase the probability of identifying unique targets, we used three approaches to mine genome datasets, based on (i) unique regions, (ii) polymorphisms, and (iii) presence/absence of regions across datasets. From a pool of candidate markers, we demonstrate LAMP assay specificity by testing related fungal species, common boxwood pathogens, and environmental samples containing 445 diverse fungal taxa. In conclusion, this comparative-genomics-based approach to the development of LAMP diagnostic assays is the first of its kind for fungi and could be easily applied to diagnostic marker development for other newly emergent plant pathogens.

1st report↗

Focusing of intense subpicosecond laser pulses in wedge targets

Two dimensional particle-in-cell simulations characterizing the interaction of ultraintense short pulse lasers in the range 10{sup 18} {<=} I {<=} 10{sup 20} W/cm{sup 2} with converging target geometries are presented. Seeking to examine intensity amplification in high-power laser systems, where focal spots are typically non-diffraction limited, we describe key dynamical features as the injected laser intensity and convergence angle of the target are systematically varied. We find that laser pulses are focused down to a wavelength with the peak intensity amplified by an order of magnitude beyond its vacuum value and develop a simple model for how the peak location moves back towards the injection plane over time. This performance is sustained over hundreds of femtoseconds and scales to laser intensities beyond 10{sup 20} W/cm{sup 2} at 1 {mu}m wavelength.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Parametric Optomechanical Oscillations in Two-dimensional Slot-type High-Q Photonic Crystal Cavities

We experimentally demonstrate an optomechanical cavity based on an air-slot photonic crystal cavity with optical quality factor Q{sub o} = 4.2 x 10{sup 4} and a small modal volume of 0.05 cubic wavelengths. The optical mode is coupled with the in-plane mechanical modes with frequencies up to hundreds of MHz. The fundamental mechanical mode shows a frequency of 65 MHz and a mechanical quality factor of 376. The optical spring effect, optical damping, and amplification are observed with a large experimental optomechanical coupling rate g{sub om}/2{pi} of 154 GHz/nm, corresponding to a vacuum optomechanical coupling rate g*/2{pi} of 707 kHz. With sub-mW or less input power levels, the cavity exhibits strong parametric oscillations. The phase noise of the photonic crystal optomechanical oscillator is also measured.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Asymmetric error field interaction with rotating conducting walls

The interaction of error fields with a system of differentially rotating conducting walls is studied analytically and compared to experimental data. Wall rotation causes eddy currents to persist indefinitely, attenuating and rotating the original error field. Superposition of error fields from external coils and plasma currents are found to break the symmetry in wall rotation direction. The vacuum and plasma eigenmodes are modified by wall rotation, with the error field penetration time decreased and the kink instability stabilized, respectively. Wall rotation is also predicted to reduce error field amplification by the marginally stable plasma.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Ultrarelativistic laser systems based on coherent beam combining

Conceptual design for femtosecond laser system of exawatt class, based on multi-channel amplifier and coherent field combining of petawatt amplifier channels with phase-frequency controlled radiation by optical clock are discussed. The scheme of start petawatt level few-cycle laser system with stable phase-frequency parameters determinated by the accuracy of the optical standard based on parametric amplification in big-size LBO crystals pumped by picosecond pulses is analyzed.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

ORION laser target diagnostics

The ORION laser facility is one of the UK's premier laser facilities which became operational at AWE in 2010. Its primary mission is one of stockpile stewardship, ORION will extend the UK's experimental plasma physics capability to the high temperature, high density regime relevant to Atomic Weapons Establishment's (AWE) program. The ORION laser combines ten laser beams operating in the ns regime with two sub ps short pulse chirped pulse amplification beams. This gives the UK a unique combined long pulse/short pulse laser capability which is not only available to AWE personnel but also gives access to our international partners and visiting UK academia. The ORION laser facility is equipped with a comprehensive suite of some 45 diagnostics covering optical, particle, and x-ray diagnostics all able to image the laser target interaction point. This paper focuses on a small selection of these diagnostics.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Regions for Brillouin seed pulse growth in relativistic laser-plasma interaction

Parametric plasma processes received renewed interest in the context of generating ultraintense and ultrashort laser pulses up to the exawatt-zetawatt regime. For Brillouin scattering and seed pulse amplification at high intensities, the strong coupling regime is of special interest. The intensity-driven low-frequency modes depend on the amplitudes of the laser fields. It is investigated here how these modes develop in the relativistic regime. Then, a unified treatment of Raman and Brillouin processes becomes necessary. Assuming circular polarization, it is shown that with increasing intensity an overlap of the originally different Raman, Brillouin, and modulational instability branches occurs. Numerical simulations with a linearized Maxwell-fluid code confirm the analytically predicted behavior.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗