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At least 1,153 records · Page 64

Data for Miscanthus giganteus Biolistic Transformation Using the Visible RUBY Red Marker Gene to Monitor Transformation Efficiency

Miscanthus × giganteus ( M × g ) is a high- yielding perennial C4 bioenergy crop, but genetic improvement by breeding is constrained by triploid sterility and clonal propagation. Improving genetic transformation methods for M × g would provide opportunities for advantageous trait introgression. Use of an easy to phenotype reporter gene is a promising strategy to improve transformation processes and efficiency. This study presents an efficient novel method for biolistic transformation of inflorescence- derived callus in M × g and demonstrates its efficacy using RUBY, a betalain-based noninvasive reporter that is visible throughout the transformation process. RUBY expression ( Zea mays codon optimized) was visible from callus stage through plantlet development into maturity. RUBY expressing independently transformed plants were confirmed by hygromycin phosphotransferase ELISA and by genomic PCR demonstrating that the RUBY phenotype is sufficient for screening transformants. The Zea mays codon optimized hygromycin selection marker was driven by previously established promoters for Miscanthus, ZmUBI and 2×35S, while the RUBY gene expression was controlled by a known Zea mays C4 promoter, Brachypodium UBI10, newly employed in Miscanthus. The construct containing the 2×35S promoter for hygromycin had a 15.1% transformation efficiency while the ZmUBI promoter had a 20.5% transformation efficiency. This study provides a novel, highly efficient protocol for successful biolistic transformation of M × g for stable expression. This study also demonstrates that RUBY expression can be used as a convenient and powerful monitor of transformation in ongoing and future work to engineer M × g into an improved bioproduct feedstock. **NOTE: in "TableS2_ProtocolComparison.csv", the data from row 665 to 971 should be removed.

Gene Editing↗

In-situ digital image correlation and thermal monitoring in directed energy deposition additive manufacturing

As in welding, directed energy deposition (DED) additive manufacturing (AM) generates complex residual stresses and distortions commensurate with the complexity of the scan pattern used for deposition. To date, measuring DED distortions on complex geometries has only been achieved post process, discarding the complex thermomechanical history that leads to that final material state. In this work, surround stereo digital image correlation (DIC) is used to 3D map surfaces and strain tensors in-situ in a powder-blown laser DED system. Infrared thermography is then projected onto these surfaces to record the full thermomechanical history of printed parts. DIC presents a unique challenge to DED AM, as no part exists at the beginning of deposition, which (a) prevents application of an appropriate speckle pattern and (b) denies the user a zero strain reference frame. Solutions to these problems are proposed and their limitations explored herein. In sum, this work presents a relatively low-cost solution to monitoring and optimizing the unique temporal artifacts induced by complex scan strategies that was previously unobtainable.

42 ENGINEERING↗

Utah FORGE 3-2417: Fiber-Optic Geophysical Monitoring of Reservoir Evolution - Workshop Presentation

This is a presentation on the Fiber-Optic Geophysical Monitoring of Reservoir Evolution at the Utah FORGE Milford Site project by Rice University, presented by Prof. Jonathan Ajo-Franklin. The project's objective was to develop an end-to-end fiber-optic sensing approach for EGS to track the initial zone of fracture creation, zones of connected mechanically compliant fractures, and zones of flowing fractures linking the injection/production well pair. This approach would also be used to integrate data into an improved thermo-hydro-mechanical model (THM). This presentation was featured in the Utah FORGE R&D Annual Workshop on September 8, 2023. The workshop provided a valuable opportunity to explore the progress made in each of the 17 Research and Development projects funded under Solicitation 2020-1 which aim to enhance our understanding of the crucial factors influencing the development of Enhanced Geothermal Systems (EGS) reservoirs and resources.

15 GEOTHERMAL ENERGY↗

Utah FORGE 3-2417: Fiber-Optic Geophysical Monitoring of Reservoir Evolution - 2024 Annual Workshop Presentation

This is a presentation on the Fiber-Optic Geophysical Monitoring of Reservoir Evolution by Rice University, presented by Jonathan Ajo-Franklin. This video slide presentation discusses the development of an end-to-end fiber-optic sensing approach for EGS to track the (1) initial zone of fracture creation, (2) zones of connected mechanically compliant fractures, (3) zones of flowing fractures, and (4) the integration of the data into an improved THM model. This presentation was featured in the Utah FORGE R&D Annual Workshop on August 13, 2024.

15 GEOTHERMAL ENERGY↗

A tailored fast thioacidolysis method incorporating multi-reaction monitoring mode of GC-MS for higher sensitivity on lignin monomer quantification

Abstract Thioacidolysis is widely used for lignin structural characterization by cleaving β-aryl ethers to release syringyl (S), guaiacyl (G), and p -hydroxyphenyl (H) monomers followed by GC analysis. However, the traditional thioacidolysis method requires tedious extraction steps with chlorinated solvent underlying harmful to health, limiting its efficiency and application. Herein, an improved thioacidolysis method with high sensitivity for the quantitation of lignin-derived monomers was developed. The improved protocol used a quick, streamlined procedure to recover the monomeric products using ethyl acetate as extracting solvent and MS detector in multi-reaction monitoring mode to enhance its ability to detect extremely low concentration (0.1 ppb with signal-to-noise higher than 2) of monomeric products. Additionally, a fast GC program was established to speed up the GC quantitation. Several representative lignocellulose samples, including gymnosperm, angiosperm, and poaceae, were used to test this tailored method. The results demonstrated that the ratios of lignin monomer compositions determined by this method were consistent with that of traditional procedure despite the slightly higher monomer yields measured. More importantly, this method uses non-chlorinated solvent for microscale extraction and requires no evaporation step for workup, which is a green and efficient way for the quantification of lignin monomer compositions.

Forestry↗

ESS-DIVE Reporting Format for Hydrologic Monitoring Data and Metadata

The ESS-DIVE Reporting Format (RF) for Hydrologic Monitoring Data and Metadata was designed for water level, temperature, electrical conductivity, specific conductance, dissolved oxygen, and pH measured in situ using sensors deployed in water bodies. It can also be applied to a broader suite of variables beyond its original scope. The RF is intended to provide clear and easy guidance to data generators aiming to upload consistent findable, accessible, interoperable, and reusable (FAIR) datasets. The RF includes instructions (pdf), a term guide (csv), templates (csv and xlsx), and a list of recommended vocabulary (csv) to equip the data generator with all of the tools needed to successfully apply the RF. There is also a crosswalk to some key data resources and standards (csv). Users should cite this dataset when using the RF but are encouraged to access the RF files on GitHub (https://github.com/ess-dive-community/essdive-hydrologic-monitoring) where the RF documentation is maintained and updated on the ESS-DIVE Community Space GitHub. Questions and suggestions for improvement can be submitted as GitHub issues.

54 ENVIRONMENTAL SCIENCES↗

Joint Focal Mechanism Inversion Using Downhole and Surface Monitoring at the Decatur, Illinois, CO2 Injection Site

ABSTRACT The three-year CO2 injection period at the Illinois Basin - Decatur Project site (Decatur, Illinois, United States) produced a number of microseismic events distributed in very distinct spatiotemporal clusters with different orientations. Further characterization of the microseismicity encompasses the determination of the event source mechanisms. Initially, the microseismic monitoring network consisted solely of borehole sensors, but has been extended with surface sensors, thereby significantly improving the data coverage over the focal sphere. This article focuses on 23 events from the northernmost microseismic cluster (about 2 km from the injection point) and takes advantage of both, surface and downhole, recordings. The resulting strike-slip east–west-oriented focal planes are all consistent with the east–west orientation of the cluster in map view. The injection-related increase of pore pressure is far below the formation fracture pressure; however, small stress-field changes associated with the pore-pressure increase may reach as far as to the investigated cluster location. Monte Carlo modeling of the slip reactivation potential within this cluster showed that the observed maximum stress-field orientation of N068° is the optimum orientation for fault reactivation of the east–west-oriented cluster. Our results suggest that the east–west orientation of the investigated cluster is the main reason for its activation, even though the cluster is about 2 km away from the low-pressure injection point.

Geochemistry & Geophysics↗

Testing and Design of Discriminants for Local Seismic Events Recorded during the Redmond Salt Mine Monitoring Experiment

The Redmond Salt Mine (RSM) Monitoring Experiment in Utah was designed to record seismoacoustic data at distances less than 50 km for algorithm testing and development. During the experiment from October 2017 to July 2019, six broadband seismic stations were operating at a time, with three of them having fixed locations for the duration, whereas the three other stations were moved to different locations every one-and-half to two-and-half months. RSM operations consist of nighttime underground blasting several times per week. The RSM is located in proximity to a belt of active seismicity, allowing direct comparison of natural and anthropogenic sources. Using the recorded data set, we built 1373 events with local magnitude (M L ) of -2.4 and lower to 3.3. For 75 blasts (RMEs) from the Redmond Salt Mine and 206 tectonic earthquakes (EQs), both M L and the coda duration magnitude (MC) are well constrained. We used these events to test and design discriminants that separate the RMEs from the EQs and are effective at local distances. The discriminants consist of M L -M C , low-frequency Sg to high-frequency Sg, Pg/Sg phase-amplitude ratios, and Rg/Sg spectral amplitude ratios, as well as different combinations of two or more of these classifiers. The areas under the receiver operating characteristic curves (AUCs) of 0.92–1.0 for M L -M C , low-frequency Sg to high-frequency Sg, and Rg/Sg indicate that these discriminants are very effective. Conversely, the AUC of only 0.57 for Pg/Sg suggests that this discriminant is only slightly better than a random classifier. Among the effective classifiers, Rg/Sg, shows the lowest likelihood of misclassification (4.3%) for the populations. In conclusion, results of joint discriminant analyses suggest that even the arguably ineffective single classifier, like Pg/Sg in this case, can provide some value when used in combination with others.

58 GEOSCIENCES↗

Pre-Sinkhole Seismicity at the Napoleonville Salt Dome: Implications for Local Seismic Monitoring of Underground Caverns

The formation of a sinkhole at the Napoleonville salt dome located near Bayou Corne in Assumption Parish, Louisiana, was preceded by an increase in seismicity, as observed 10 km away by a continuously recording broadband seismic sensor. The seismicity rate in the days prior to the sinkhole formation contained hundreds of long-period events, some of which could be detected using a power detector (short-term to long-term energy ratio) tuned to the duration and frequency content of the seismicity. A characteristic of some of these events is a resonance near 0.4 Hz, which could be due to either an acoustic resonance within the brine-filled cavity or possibly due to unsteady fluid flow through a crack. In this work, a more exhaustive catalog was obtained using some of the events detected by the power detector as templates in a correlation detector. Furthermore, the full pre-sinkhole sequence of detections could offer lessons in remote monitoring of underground caverns.

58 GEOSCIENCES↗

Seismic Monitoring near Ithaca, New York, Reveals Nonuniform Distribution of Microseismicity in an Intraplate Region

Abstract Cornell University intends to use a deep direct-use geothermal system to heat its Ithaca, New York, campus. In preparation for this project, the Cornell Seismic Network has been monitoring the background seismicity in this intraplate region since 2019. From January 2020 to June 2023, 95 events were detected within 20 km of the proposed geothermal well site, with local magnitudes ranging from −1.02 to 0.56. None of these events appear in regional or national catalogs. Events locate in a narrow geographic band, with one-fourth exhibiting multimodal hypocentral probability peaks both near the surface and at 1–4 km depth. We relocate events with a joint hypocenter and 1D velocity model inversion, in addition to a fully nonlinear method, and then compare observations with synthetic waveforms. Together, these approaches provide strong evidence for >95% of events locating at the surface or within the 3-km-thick sedimentary sequence. We explore how anthropogenic activity and regional topographic stress may contribute to frequent surficial events. This information is critical for characterizing the background microseismicity for comparison during future geothermal operations. Ithaca’s geology of Paleozoic sediments overlying Precambrian crystalline basement is typical of many continental interiors, so these results also provide insight into intraplate microseismicity patterns.

Geochemistry & Geophysics↗

Monitoring, Reporting, and Verification Plan (MRV)- Meeting EPA Guidelines for GHGRP and Subpart RR

This report summarizes the process and work completed to develop and successfully submit an MRV plan to EPA. This work used the lessons learned from various MRCSP tasks to demonstrate the geologic understanding of the Niagaran reefs, successful monitoring and accounting methodologies, understanding of potential risks and leakage pathways, and mass balance of CO2 baseline and net storage. The plan currently encompasses 10 reefs and also provides a reporting plan for future reef development.

accounting↗

Assessing convergence in global sensitivity analysis: a review of methods for assessing and monitoring convergence

In global sensitivity analysis (GSA) of a model, a proper convergence analysis of metrics is essential for ensuring a level of confidence or trustworthiness in sensitivity results obtained, yet is somewhat deficient in practice. The level of confidence in sensitivity measures, particularly in relation to their influence and support for decisions from scientific, social and policy perspectives, is heavily reliant on the convergence of GSA. We review the literature and summarize the available methods for monitoring and assessing convergence of sensitivity measures based on application purposes. The aim is to expose the various choices for convergence assessment and encourage further testing of available methods to clarify their level of robustness. Furthermore, the review identifies a pressing need for comparative studies on convergence assessment methods to establish a clear hierarchy of effectiveness and encourages the adoption of systematic approaches for enhanced robustness in sensitivity analysis.

54 ENVIRONMENTAL SCIENCES↗

Space-Charge and Other Effects in Fermilab Booster and IOTA Rings’ Ionization Profile Monitors

Ionization profile monitors (IPMs) are widely used in accelerators for non-destructive and fast diagnostics of high energy particle beams. At low beam intensities, initial velocities of the secondaries to collect (ions or electrons) result in the IPM profile smearing. At high beam intensities, the space-charge forces make the measured IPM profiles significantly different from those of the beams. We analyze dynamics of the secondaries in IPMs, describe an effective algorithm to reconstruct the beam sizes from the measured IPM profiles and apply it to the Fermilab 8 GeV proton Booster and 70 MeV/c IOTA ring IPMs.

Shiltsev, Vladimir D.↗

Progress on an Electron Beam Profile Monitor at the Fermilab Main Injector

The current program at Fermilab involves the construction of a new superconducting linear accelerator (LINAC) to replace the existing warm version. The new LINAC, together with other planned improvements, is in support of proton beam intensities in the Main Injector (MI) that will exceed 2 MW. Measuring the transverse profiles of these high intensity beams in a ring requires non-invasive techniques. The MI uses ionization profile monitors as its only profile system. An alternative technique involves measuring the deflection of a probe beam of electrons with a trajectory perpendicular to the proton beam. This type of device was installed in MI and initial studies of it have been previously presented. This paper will present the status and recent studies of the device utilizing different techniques.

43 PARTICLE ACCELERATORS↗

Design of a non-invasive laser-based beam profile monitor system for the new Fermilab PIP-II superconducting H- linac

As part of the new Proton Improvement Plan (PIP-II), Fermilab is undertaking the development of a new 800 MeV, 2 mA H- superconducting RF linac to replace its present normal conducting 400 MeV linac. The PIP-II linac consists of a series of superconducting RF cryomodules from 2.1 MeV to 800 MeV. To limit the potential damage to the superconducting RF cavities, PIP-II will utilize non-invasive laser-based monitors (laserwires) to obtain beam profiles via photoionization. This paper will present the design of this PIP-II laserwire system including the picosecond pulsed laser, optical transport line, 13 individual laserwire stations, laser feedback and timing controls. The paper also describes the signal detection system and operation of the profile measurements.

Scarpine, Victor [Fermilab]↗

Space-Charge Effects in Ionization Beam Profile Monitors

Ionization profile monitors (IPMs) are widely used in accelerators for non-destructive and fast diagnostics of high energy particle beams. At high beam intensities, the space-charge forces make the measured IPM profiles significantly different from those of the beams. We analyze dynamics of the secondaries in IPMs and develop an effective algorithm to reconstruct the beam sizes from the measured IPM profiles. Efficiency of the developed theory is illustrated in application to the Fermilab 8 GeV proton Booster IPMs.

Shiltsev, Vladimir D.↗

Skimmer-Nozzle Configuration Measurements for a Gas Sheet Beam Profile Monitor

Understanding the characteristics of the gas sheet being produced and optimal configuration of the gas injection system is essential to the the performance of a gas sheet beam profile monitor. A gas injection system test stand has been built at Fermilab to test various nozzle and slit configurations. The distance between the nozzle and slit can be changed to find an optimal configuration. Using a moveable cold cathode gauge the gas profile is measured.

43 PARTICLE ACCELERATORS↗

Microbial potentiometric sensor technology for real-time detecting and monitoring of toxic metals in aquatic matrices

Considering that toxic metals can affect metabolic processes in microorganisms adversely, it can be hypothesized that these metals in water matrices would induce a decrease in metabolic activity of the biofilm microorganisms populating the surface of a sensing electrode, which could be registered as a change in the open-circuit potential (OCP) generated by the biofilm microorganisms. The goal of this study was to test this hypothesis and demonstrate the underlying principle that microbial potentiometric sensor (MPS) technology could be used for long-term and real-time monitoring and detection of rapid changes in metal concentrations in realistic aquatic environments. To address the goal, four objective were addressed: (1) a batch reactor with three graphite-based MPS electrodes was fabricated; (2) a set of single-ion solutions and one multiple ion solution were prepared reflecting realistic concentrations of metals found in electroplating wastewaters; (3) the responses of the MPS to the simultaneous presence of multiple toxic metal ions in a single solution were measured; and (4) the changes of the MPS signals to the presence of individual metal ion solutions were examined. While the hypothesis was validated, the study also revealed that the MPS was sufficiently sensitive to not only detect, but also quantify, toxic metal ion concentrations in aqueous solutions. The coefficients of determination, which were R 2 > 0.995, and responsiveness of <1 μmol/L for some toxic metal cations, strongly support the performance of MPS technology in the echelons of expensive analytical tools capable detecting and measuring trace elements.The magnitude of the MPS response was toxic metal specific. When the molar concertation normalizes the inhibition portion of the signal area, the assessed sensitivity order was: Se>Cd>Pb>Ag>Ni> Zn. The study provides valuable information for enforcement agents, environmental professionals, and wastewater treatment operators, so toxic metal pollution and its detrimental impacts can be prevented and mitigated.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗